mRNA_H-elongata_contig8052.15701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8052.15701.1
Unique NamemRNA_H-elongata_contig8052.15701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.360e-68
Identity = 124/304 (40.79%), Postives = 173/304 (56.91%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYF------DYLSPPTPDRPT---------DAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGE-KNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
            +QK GG+TV  +L+  +       +YD+  WK GD  +  +  +   G TW V+ G   EA+RR +  D  C++FT+FRHPI+R+VSAYF+C+    D  CASE++ A+D DLL FA+HWGN+ VRQFA  FV +D V            HD     ++ WY LK+Y       D+  P   +  T         +A LYD+L    D IR  Y  VGILE WNTTL++ +  L +PG+ W   +   G      DY+    ++  L+ AWT +ELK ++RLDLLLYEHA DVF++QAR Y +L
Sbjct:  162 LQKCGGSTVKYMLRRSYGSRYS--IYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRV--DYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.280e-66
Identity = 120/298 (40.27%), Postives = 167/298 (56.04%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRF------DHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAAD---DVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDR-PTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNILQ 864
            +QKAGGTTV  +L   W  E  T  YD+  WKKG    +       +   W    G  +EA+RR       D    C+WFTVFRHP+SRLVSAY++C+  P D+LCASE +S+R+ DL+ FARHWGN+ +RQFA  FV+ D   D L + + G            +  WY+LK++ +  S    D  P    L  M   + D +RD Y VVGILE+WN TL++ ++ L MPG+ W++ +   G +N +  ++ GEK   L+ A +  E+   + LDL LY  A D+FNQQ   Y I Q
Sbjct:   94 LQKAGGTTVKRLLFDSWGSESTT--YDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFK-GEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.810e-64
Identity = 120/293 (40.96%), Postives = 168/293 (57.34%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGT-----VNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
            +QK GG+TV  +L+ +W       +YD+  WK GD  + K+  +   G  W V+ G   EA+R  +     C++FT+FRHPI+R+VSAYF+C+    D  CASE+M A+D DLL FA+HWGN+ +RQFA  FV +DDV        L  P       +     +  + D  +  TPD P    LY++L    D +RD Y  VGILE WNTTL + +  L MP ++W++ +   G      VN   + E       L+ AWT +ELK ++RLDLLLYEHA DVF+QQAR + +L
Sbjct:  183 LQKCGGSTVKDLLEDRWGSRFF--IYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQEYQLKMYLERPQKEDGGVLGQREAMTAHQDAAA--TPDAP----LYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIE------TLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 4.000e-54
Identity = 114/308 (37.01%), Postives = 166/308 (53.90%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWH--HEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHAD--RCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSAR--DTDLLGFARHWGNYGVRQFAFAFVAADDVLA---AFSNGTLSFPHDVPWTSVSDWYLLKVYF----DYLSPPTPDRPTD---------AALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
            M KAGG+TV  +L   W     V   +YD+  W +G    + + Q+F+ G    ++ G+  E +R F       CKWFT+FRHPI RLVSAYF+CK++P D LCA+  + A   DTDL  FA HWG++G+RQFA AFV  +++LA    +    +  P+     S   WY LK+Y     D        R  D         A +  +L  +Q+ + ++Y  VG+LE W T+L + N  LGMPG DW + + S+G  N++  +   E    L  +WT   L+ ++ LDLLLY++A  V NQQ   Y +
Sbjct:    1 MNKAGGSTVKYMLA-PWTKAQNVTVGLYDSPQWLEG----KDFAQDFL-GDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGK-RSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLR-SWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.650e-54
Identity = 110/292 (37.67%), Postives = 153/292 (52.40%), Query Frame = 1
Query:    1 MQKAGGTTVNT-ILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLS-FPHDVPW---TSVSDWYLLKVYF------DYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQA 843
            M K+GG TV   I+       V T ++D  +W  G +  + +V+E           G   E +R +D  D CKWFTVFRHP+SR+VSAYF+C+R   D+LCA+ ++ A   DLL FA HWGNYG+RQFA A + A+DV   F N  +S F           +  WY  K Y       D+  P  P+    + L   L   Q+T+  +Y  VGI+E W+ ++ + N  L +   DW K ++  G  N+     E    +AL+ AW S ELK FI LD+LLY+HA  V   Q 
Sbjct:   58 MNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAV-----FTYGGYTEGLRMYDDRD-CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDV---FHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPE----SGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQV 336          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.470e-40
Identity = 83/219 (37.90%), Postives = 122/219 (55.71%), Query Frame = 1
Query:  229 FRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRP--------TDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNIL 861
            ++ PI RLVSAYF+CK+   D+LCAS ++ A +TDL  FA+HWGNYG+RQF+ AFV A+DV AA     +    D        WY +K YF+       +R          D A+  +L  ++D +   Y+ VGILE W T++ + N  L +P  +WQ A R++G  N ++   + E +A L  AW    L   + LD+ LY+HA  V N+Q   + I+
Sbjct:   18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGI----DGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHA-LRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.430e-39
Identity = 95/299 (31.77%), Postives = 143/299 (47.83%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDV--YDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALY-----------DMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
            M KAGGT++  ++K  +     T V  +    +  GD   Q+ +    +     ++ G+  E +R +     CKWFT+ RHPI+RLVSA+ +C   P D+LCA+ I    D D+  FA HWGN+GV QFA AF   +D+L             V       WY  K+YF+    P+    T A +            ++L  +++ +R +Y  VGILE W T++ + +  L +PG +W     S    N ++      KN  L  + T   LK  + LD+LLYEHA  V   Q   Y +
Sbjct:   43 MNKAGGTSIRRMIKD-YAAATNTTVGEFTHTQYNAGDRGVQQILDRRPS-----LIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDIL-------------VTEVKSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKA---KNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.810e-37
Identity = 96/299 (32.11%), Postives = 145/299 (48.49%), Query Frame = 1
Query:    7 KAGGTTVNTILKHKWHHEVGTDVYDTRDW-KKGDAQTQKYVQE---FVAGHTWKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFD-YLSPP----------TPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
            KAGGTTV T L++       T      DW  +GD   Q  + +    +AG   + +R S+ +          CKWFT+ RHPI+RL+SA+++C     D+LCA+ I    D D+  FA+HWGNY + QFA   V   ++ A           D P      W+  K+YF+  L  P          T D      + D+L  +++ +R  Y  VGILE+W  ++ + +  L +PG +W  A  S+    +     E  K A L  A T   L+ ++ LDLLLYE+A  +  +Q R Y++
Sbjct:   45 KAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQG---------CKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFAE--------EVDAP-----AWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIVE--KKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 5.960e-36
Identity = 94/290 (32.41%), Postives = 142/290 (48.97%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGT---VNTNEDYEEGEKNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
            M K+G +    +   +W  +    V+DT  W++GD     +  + +A H WK++ G  VE++R  +H +R CKW T+FRHPI+RL+SAY  C   P D +C         T L+ FA  WGN+ +RQFA   V+   V    +            T  S WYL+K   +YL+        D  L  ML  ++  +  QY  VGI +   TT+ + +  L M GLDW  ++ ++G    V  + +Y+  E       A  +  + S +RLD+ LYEHA  VF  Q   + I
Sbjct:  279 MDKSGASGARRVATERWRKDEL--VFDTVQWRRGDG----FAADVMASH-WKLLHGGCVESLR--NHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQAR-------TGTSMWYLVK---EYLA--RGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEP-FRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542          
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.210e-35
Identity = 94/291 (32.30%), Postives = 142/291 (48.80%), Query Frame = 1
Query:    1 MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHTWKVVRGSSVEAMRRFDHADR-CKWFTVFRHPISRLVSAYFWCKRRPVDKLCASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPHDVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTVVGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGE----KNAALEMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNI 858
            M K+G +    +   +W  +    V+DT  W++GD     +  + +A   WK++ G  VE++R  +H  R CKW T+FRHPI+RL+SAY  C   P D +C         T L  FA  WGN+ +RQFA A V+   V    +            T  S WYL+K   +YL+        D  L   L  ++  +  QY  VGI +   TT+ + +  L M GLDW  ++ ++G +N  ED ++ E    ++     A  +  + S +RLD+ LYEHA  VF  Q   + I
Sbjct:    1 MDKSGASGARRVATEQWRKDEL--VFDTVQWRRGDG----FAADVMASR-WKLLHGGCVESLR--NHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQAR-------TGTSMWYLVK---EYLA--RGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLG-IN-EEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8052.15701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FWQ3_ECTSI1.360e-6840.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G715_ECTSI1.280e-6640.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI2.810e-6440.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FS84_ECTSI4.000e-5437.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY77_9PHAE5.650e-5437.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L061_9PHAE4.470e-4037.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE4.430e-3931.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE3.810e-3732.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM0_9PHAE5.960e-3632.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI2.210e-3532.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8052contigH-elongata_contig8052:8495..9361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue1.7e-58
Seed eggNOG ortholog2880.D7FWQ3
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size867
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.6354074-CDS-H-elongata_contig8052:8494..93611622931210.6354074-CDS-H-elongata_contig8052:8494..9361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8052 8495..9361 +
1691679743.0678415-CDS-H-elongata_contig8052:8494..93611691679743.0678415-CDS-H-elongata_contig8052:8494..9361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8052 8495..9361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8052.15701.1prot_H-elongata_contig8052.15701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8052 8495..9361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8052.15701.1

>prot_H-elongata_contig8052.15701.1 ID=prot_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MQKAGGTTVNTILKHKWHHEVGTDVYDTRDWKKGDAQTQKYVQEFVAGHT
WKVVRGSSVEAMRRFDHADRCKWFTVFRHPISRLVSAYFWCKRRPVDKLC
ASEIMSARDTDLLGFARHWGNYGVRQFAFAFVAADDVLAAFSNGTLSFPH
DVPWTSVSDWYLLKVYFDYLSPPTPDRPTDAALYDMLGRIQDTIRDQYTV
VGILENWNTTLNMLNAGLGMPGLDWQKAYRSMGTVNTNEDYEEGEKNAAL
EMAWTSAELKSFIRLDLLLYEHAKDVFNQQARMYNILQ*
back to top

mRNA from alignment at H-elongata_contig8052:8495..9361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8052.15701.1 ID=mRNA_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig8052:8495..9361+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAAGGCCGGTGGTACTACGGTAAACACGATTCTAAAGCATAAATG GCATCATGAAGTGGGGACAGACGTCTACGACACACGCGACTGGAAAAAGG GAGACGCCCAAACGCAGAAATACGTACAGGAGTTCGTCGCAGGACACACA TGGAAAGTAGTGCGGGGATCCTCGGTCGAGGCGATGAGACGCTTTGACCA TGCGGACCGCTGCAAATGGTTTACCGTTTTCCGGCACCCTATTTCAAGAC TTGTTTCAGCGTATTTTTGGTGCAAGAGGCGGCCAGTAGACAAGCTGTGT GCATCGGAAATTATGTCGGCCAGAGACACTGACCTCCTAGGTTTTGCACG GCATTGGGGAAATTATGGGGTGCGACAGTTTGCCTTCGCGTTCGTTGCGG CTGACGATGTCCTTGCCGCCTTCTCCAACGGAACGTTAAGTTTTCCGCAT GATGTACCATGGACATCTGTGAGCGACTGGTACTTACTAAAGGTGTACTT CGATTATTTGTCACCTCCTACACCCGATCGACCAACGGACGCAGCTCTGT ACGATATGCTAGGTCGAATCCAGGATACCATCCGAGACCAATATACGGTA GTCGGAATCCTGGAAAACTGGAATACCACTTTGAATATGCTGAACGCTGG ACTTGGGATGCCCGGACTTGACTGGCAGAAAGCCTATCGGAGCATGGGGA CAGTCAATACCAACGAAGATTACGAAGAAGGGGAAAAGAATGCGGCGTTG GAGATGGCATGGACCAGTGCCGAGTTGAAATCTTTCATACGTCTCGACCT TCTTTTGTATGAGCATGCTAAAGACGTCTTCAACCAGCAGGCACGAATGT ACAATATTCTGCAGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8052:8495..9361+

>mRNA_H-elongata_contig8052.15701.1 ID=mRNA_H-elongata_contig8052.15701.1|Name=mRNA_H-elongata_contig8052.15701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig8052:8495..9361+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAAGGCCGGTGGTACTACGGTAAACACGATTCTAAAGCATAAATG
GCATCATGAAGTGGGGACAGACGTCTACGACACACGCGACTGGAAAAAGG
GAGACGCCCAAACGCAGAAATACGTACAGGAGTTCGTCGCAGGACACACA
TGGAAAGTAGTGCGGGGATCCTCGGTCGAGGCGATGAGACGCTTTGACCA
TGCGGACCGCTGCAAATGGTTTACCGTTTTCCGGCACCCTATTTCAAGAC
TTGTTTCAGCGTATTTTTGGTGCAAGAGGCGGCCAGTAGACAAGCTGTGT
GCATCGGAAATTATGTCGGCCAGAGACACTGACCTCCTAGGTTTTGCACG
GCATTGGGGAAATTATGGGGTGCGACAGTTTGCCTTCGCGTTCGTTGCGG
CTGACGATGTCCTTGCCGCCTTCTCCAACGGAACGTTAAGTTTTCCGCAT
GATGTACCATGGACATCTGTGAGCGACTGGTACTTACTAAAGGTGTACTT
CGATTATTTGTCACCTCCTACACCCGATCGACCAACGGACGCAGCTCTGT
ACGATATGCTAGGTCGAATCCAGGATACCATCCGAGACCAATATACGGTA
GTCGGAATCCTGGAAAACTGGAATACCACTTTGAATATGCTGAACGCTGG
ACTTGGGATGCCCGGACTTGACTGGCAGAAAGCCTATCGGAGCATGGGGA
CAGTCAATACCAACGAAGATTACGAAGAAGGGGAAAAGAATGCGGCGTTG
GAGATGGCATGGACCAGTGCCGAGTTGAAATCTTTCATACGTCTCGACCT
TCTTTTGTATGAGCATGCTAAAGACGTCTTCAACCAGCAGGCACGAATGT
ACAATATTCTGCAGTAGATGCAGAAGGCCGGTGGTACTACGGTAAACACG
ATTCTAAAGCATAAATGGCATCATGAAGTGGGGACAGACGTCTACGACAC
ACGCGACTGGAAAAAGGGAGACGCCCAAACGCAGAAATACGTACAGGAGT
TCGTCGCAGGACACACATGGAAAGTAGTGCGGGGATCCTCGGTCGAGGCG
ATGAGACGCTTTGACCATGCGGACCGCTGCAAATGGTTTACCGTTTTCCG
GCACCCTATTTCAAGACTTGTTTCAGCGTATTTTTGGTGCAAGAGGCGGC
CAGTAGACAAGCTGTGTGCATCGGAAATTATGTCGGCCAGAGACACTGAC
CTCCTAGGTTTTGCACGGCATTGGGGAAATTATGGGGTGCGACAGTTTGC
CTTCGCGTTCGTTGCGGCTGACGATGTCCTTGCCGCCTTCTCCAACGGAA
CGTTAAGTTTTCCGCATGATGTACCATGGACATCTGTGAGCGACTGGTAC
TTACTAAAGGTGTACTTCGATTATTTGTCACCTCCTACACCCGATCGACC
AACGGACGCAGCTCTGTACGATATGCTAGGTCGAATCCAGGATACCATCC
GAGACCAATATACGGTAGTCGGAATCCTGGAAAACTGGAATACCACTTTG
AATATGCTGAACGCTGGACTTGGGATGCCCGGACTTGACTGGCAGAAAGC
CTATCGGAGCATGGGGACAGTCAATACCAACGAAGATTACGAAGAAGGGG
AAAAGAATGCGGCGTTGGAGATGGCATGGACCAGTGCCGAGTTGAAATCT
TTCATACGTCTCGACCTTCTTTTGTATGAGCATGCTAAAGACGTCTTCAA
CCAGCAGGCACGAATGTACAATATTCTGCAGTAG
back to top