mRNA_H-elongata_contig80475.15698.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80475.15698.1
Unique NamemRNA_H-elongata_contig80475.15698.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80475.15698.1 vs. uniprot
Match: D7FY75_ECTSI (Serine O-acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY75_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.650e-7
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  189 LSMWLQGLFLVYLASLLASLPGCYKAILNDAHIISNDPALHGSYEILYAYP 341
            + M+L     + LA LL +L  CY+A+LNDA IIS DPAL    E+LYAYP
Sbjct:    1 MDMFLLTAAAIVLAPLLLNLGSCYRAVLNDARIISLDPALQSKLEVLYAYP 51
[Close]
BLAST of mRNA_H-elongata_contig80475.15698.1 vs. uniprot
Match: D7FY76_ECTSI (Serine O-acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY76_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.250e-6
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  189 LSMWLQGLFLVYLASLLASLPGCYKAILNDAHIISNDPALHGSYEILYAYP 341
            + M+L     + LA LL +L  CY+A+LNDA IIS DPAL    E+LYAYP
Sbjct:    1 MDMFLLKAAAIVLAPLLLNLGSCYRAVLNDARIISLDPALQSKLEVLYAYP 51
[Close]
BLAST of mRNA_H-elongata_contig80475.15698.1 vs. uniprot
Match: A0A6H5KDD3_9PHAE (Serine O-acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.240e-6
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:  219 VYLASLLASLPGCYKAILNDAHIISNDPALHGSYEILYAYP 341
            V LA LL +L  CY+A+LNDA IIS DPAL    E+LYAYP
Sbjct:    9 VVLAPLLLNLGSCYRAVLNDARIISLDPALQSKLEVLYAYP 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80475.15698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY75_ECTSI6.650e-752.94Serine O-acetyltransferase n=1 Tax=Ectocarpus sili... [more]
D7FY76_ECTSI1.250e-652.94Serine O-acetyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KDD3_9PHAE3.240e-663.41Serine O-acetyltransferase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80475contigH-elongata_contig80475:570..910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size343
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.4130557-UTR-H-elongata_contig80475:569..7631622931210.4130557-UTR-H-elongata_contig80475:569..763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80475 570..763 +
1691679743.017412-UTR-H-elongata_contig80475:569..7631691679743.017412-UTR-H-elongata_contig80475:569..763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80475 570..763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.432266-CDS-H-elongata_contig80475:763..9101622931210.432266-CDS-H-elongata_contig80475:763..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80475 764..910 +
1691679743.027987-CDS-H-elongata_contig80475:763..9101691679743.027987-CDS-H-elongata_contig80475:763..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80475 764..910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80475.15698.1prot_H-elongata_contig80475.15698.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80475 764..910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80475.15698.1

>prot_H-elongata_contig80475.15698.1 ID=prot_H-elongata_contig80475.15698.1|Name=mRNA_H-elongata_contig80475.15698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MWLQGLFLVYLASLLASLPGCYKAILNDAHIISNDPALHGSYEILYAYP
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mRNA from alignment at H-elongata_contig80475:570..910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80475.15698.1 ID=mRNA_H-elongata_contig80475.15698.1|Name=mRNA_H-elongata_contig80475.15698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=341bp|location=Sequence derived from alignment at H-elongata_contig80475:570..910+ (Himanthalia elongata Himel1 dioecious)
GTCGCTGTAGTAACCTTCCTTCGCACAACCCCTGCTCCAAAGCTGCGAGA
CCGACCCATTCAATCTCTCCTGCAAGATATAGTAATTCGTTACAGAAGCT
CACTGAAAACAAGTGCCCGACTGGGACGGACTCGTAGCCTGCACGCGATA
TCTTCCCATCCATAGAAAGACCGCGTCACCAGAGTTAGTTATCGATGTGG
CTCCAGGGTCTCTTCTTGGTATACCTGGCCTCACTCCTGGCGAGCCTGCC
GGGATGCTACAAGGCTATCCTCAACGACGCCCACATTATCTCAAACGACC
CGGCGCTTCACGGCAGCTATGAGATACTTTACGCTTATCCA
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Coding sequence (CDS) from alignment at H-elongata_contig80475:570..910+

>mRNA_H-elongata_contig80475.15698.1 ID=mRNA_H-elongata_contig80475.15698.1|Name=mRNA_H-elongata_contig80475.15698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig80475:570..910+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCTCCAGGGTCTCTTCTTGGTATACCTGGCCTCACTCCTGGCGAG
CCTGCCGGGATGCTACAAGGCTATCCTCAACGACGCCCACATTATCTCAA
ACGACCCGGCGCTTCACGGCAGCTATGAGATACTTTACGCTTATCCAATG
TGGCTCCAGGGTCTCTTCTTGGTATACCTGGCCTCACTCCTGGCGAGCCT
GCCGGGATGCTACAAGGCTATCCTCAACGACGCCCACATTATCTCAAACG
ACCCGGCGCTTCACGGCAGCTATGAGATACTTTACGCTTATCCA
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