mRNA_H-elongata_contig80399.15692.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80399.15692.1
Unique NamemRNA_H-elongata_contig80399.15692.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig80399.15692.1 vs. uniprot
Match: D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.140e-30
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 KVHTCLIPSERDFLLDCLDEIHRRCDSIFDGRNHAIAFYERGTVESLLEMLRMFKLDEVFVRQAVKTLVQLCGQD 225
            +VHTCL+PSERDFLL CLDE+H RCDS+  GR    AF+E+G VE+LLEML MFKLDEVF+RQAV+TL+ LCGQD
Sbjct:   28 QVHTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQD 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80399.15692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0L4_ECTSI2.140e-3072.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80399contigH-elongata_contig80399:2209..2831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-06_007190.1
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.8418503-CDS-H-elongata_contig80399:2208..23021622931209.8418503-CDS-H-elongata_contig80399:2208..2302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80399 2209..2302 +
1691679742.7843242-CDS-H-elongata_contig80399:2208..23021691679742.7843242-CDS-H-elongata_contig80399:2208..2302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80399 2209..2302 +
1622931209.8626947-CDS-H-elongata_contig80399:2700..28311622931209.8626947-CDS-H-elongata_contig80399:2700..2831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80399 2701..2831 +
1691679742.7976253-CDS-H-elongata_contig80399:2700..28311691679742.7976253-CDS-H-elongata_contig80399:2700..2831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80399 2701..2831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80399.15692.1prot_H-elongata_contig80399.15692.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80399 2209..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80399.15692.1

>prot_H-elongata_contig80399.15692.1 ID=prot_H-elongata_contig80399.15692.1|Name=mRNA_H-elongata_contig80399.15692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
KVHTCLIPSERDFLLDCLDEIHRRCDSIFDGRNHAIAFYERGTVESLLEM
LRMFKLDEVFVRQAVKTLVQLCGQD
back to top

mRNA from alignment at H-elongata_contig80399:2209..2831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80399.15692.1 ID=mRNA_H-elongata_contig80399.15692.1|Name=mRNA_H-elongata_contig80399.15692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at H-elongata_contig80399:2209..2831+ (Himanthalia elongata Himel1 dioecious)
AAGGTTCACACATGCCTGATACCGTCCGAGAGAGACTTCCTTCTTGATTG
TCTGGATGAAATCCACCGAAGATGTGACTCCATATTCGACGGACGTGAGT
TAATGTGTCAAATAGTAGAAATCATCTCTGCCCTGTTACCTCCTCGTTAT
CAGTCGAAAGTGTCGGTATTCGGCACCAAAAACAGTCCAGCTGGTCAAAA
ATATTTTCTATGAATGCATTGAGGCAATAACTTCTTCTCTTCGATAGGAG
CAGACTGCCGCTTCGGCAAAAATATCCGAAGATGGATCCCGTGTGGGGTT
CAAGCAGTCAAAGGGTGTAGTTATTGCGCTAAAGTAAGAATTATATACCC
CCCATCAATGCAACGACAGCGAGAACAACGGAAAGTACTTTACGTGGATG
TAATGTGCGCTCAATAAACGATGCAACTGCATCAAAAGACGAGAACCTAT
ACGGAGAGAAAACGACTCGGGGAACGGGGGGAATCGAAACAGGAAACCAT
GCCATTGCGTTCTACGAACGCGGGACGGTGGAATCCCTCCTGGAGATGCT
GCGCATGTTCAAGCTAGATGAGGTTTTCGTCCGACAAGCTGTCAAGACAC
TCGTTCAGTTATGCGGACAGGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig80399:2209..2831+

>mRNA_H-elongata_contig80399.15692.1 ID=mRNA_H-elongata_contig80399.15692.1|Name=mRNA_H-elongata_contig80399.15692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig80399:2209..2831+ (Himanthalia elongata Himel1 dioecious)
AAGGTTCACACATGCCTGATACCGTCCGAGAGAGACTTCCTTCTTGATTG
TCTGGATGAAATCCACCGAAGATGTGACTCCATATTCGACGGACAAGGTT
CACACATGCCTGATACCGTCCGAGAGAGACTTCCTTCTTGATTGTCTGGA
TGAAATCCACCGAAGATGTGACTCCATATTCGACGGACGAAACCATGCCA
TTGCGTTCTACGAACGCGGGACGGTGGAATCCCTCCTGGAGATGCTGCGC
ATGTTCAAGCTAGATGAGGTTTTCGTCCGACAAGCTGTCAAGACACTCGT
TCAGTTATGCGGACAGGATGAAACCATGCCATTGCGTTCTACGAACGCGG
GACGGTGGAATCCCTCCTGGAGATGCTGCGCATGTTCAAGCTAGATGAGG
TTTTCGTCCGACAAGCTGTCAAGACACTCGTTCAGTTATGCGGACAGGAT
back to top