mRNA_H-elongata_contig80373.15688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80373.15688.1
Unique NamemRNA_H-elongata_contig80373.15688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.140e-13
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV 123
            VHDEVILEGPEE+AEEALAET+ CM+QPWDG+GL+ LRV +
Sbjct: 1548 VHDEVILEGPEESAEEALAETVRCMQQPWDGIGLRELRVDL 1588
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-12
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV 123
            VHDEVILEGPEE+A+EALAET+ CM+QPWDG+GL+ LRV +
Sbjct: 1419 VHDEVILEGPEESAKEALAETVRCMQQPWDGIGLRELRVDL 1459
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S1XU43_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU43_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV 123
            VHDEVILEGPEE  +EALAE   CME PWD  GLK L+V +
Sbjct:  393 VHDEVILEGPEEQVDEALAEVRRCMEAPWDDFGLKPLKVEL 433
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S4CWA7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CWA7_9EUGL)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV 123
            +HDEVI+EGPEE  EEA+AE   CME+PWD VGL  +RV +
Sbjct:  551 IHDEVIVEGPEEHWEEAMAEVKKCMEEPWDNVGLGPMRVKL 591
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S2BNW5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNW5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-8
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPW--DGVGLKGLRVSV 123
            +HDEVILEGPEE  EEAL E  +CME PW  DGVGL  LRV++
Sbjct:  146 IHDEVILEGPEEHVEEALNEVRSCMEHPWSDDGVGLGELRVTL 188
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A6U7X8D5_9EUGL (Hypothetical protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U7X8D5_9EUGL)

HSP 1 Score: 56.2 bits (134), Expect = 2.230e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRV 117
            +HDEVI+EGPEE  EEA AE + CME+PWD  GL+ L+V
Sbjct:  149 IHDEVIVEGPEEHVEEAQAEVVRCMEEPWDDYGLERLKV 187
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S1N8T0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N8T0_9EUGL)

HSP 1 Score: 56.2 bits (134), Expect = 4.540e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRV 117
            +HDEVI+EGPEE  EEA AE + CME+PWD  GL+ L+V
Sbjct:  514 IHDEVIVEGPEEHVEEAQAEVVRCMEEPWDDYGLERLKV 552
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A510EYA4_BIGNA (Plastid-targeted DNA polymerase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A510EYA4_BIGNA)

HSP 1 Score: 55.5 bits (132), Expect = 8.470e-8
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV 123
            VHDEVI+EGPEE AE AL E ++CM  P+DGVGL+ L+V +
Sbjct: 1197 VHDEVIIEGPEEHAEAALQEVISCMTAPFDGVGLRPLKVDL 1237
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S2K448_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K448_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.920e-7
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPW 87
            +HDEVILEGPEETAEEA AE + CME PW
Sbjct:  140 IHDEVILEGPEETAEEAFAEVIKCMESPW 168
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BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Match: A0A7S1BFW0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFW0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.020e-7
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    1 VHDEVILEGPEETAEEALAETLNCMEQPW 87
            VHDE+ILEGPEETAEEA  E L CME PW
Sbjct:  141 VHDEIILEGPEETAEEAFEEVLQCMESPW 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80373.15688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D2_9PHAE3.140e-1378.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ5_ECTSI1.100e-1275.61Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S1XU43_9STRA5.090e-968.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4CWA7_9EUGL1.780e-863.41Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2BNW5_9STRA2.200e-867.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U7X8D5_9EUGL2.230e-864.10Hypothetical protein n=2 Tax=Eutreptiella gymnasti... [more]
A0A7S1N8T0_9EUGL4.540e-864.10Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A510EYA4_BIGNA8.470e-863.41Plastid-targeted DNA polymerase n=1 Tax=Bigelowiel... [more]
A0A7S2K448_9STRA2.920e-779.31Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1BFW0_9STRA8.020e-779.31Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80373contigH-elongata_contig80373:610..732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D8LMQ5
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.3995452-CDS-H-elongata_contig80373:609..7321622931209.3995452-CDS-H-elongata_contig80373:609..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80373 610..732 -
1691679742.5783875-CDS-H-elongata_contig80373:609..7321691679742.5783875-CDS-H-elongata_contig80373:609..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80373 610..732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80373.15688.1prot_H-elongata_contig80373.15688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80373 610..732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80373.15688.1

>prot_H-elongata_contig80373.15688.1 ID=prot_H-elongata_contig80373.15688.1|Name=mRNA_H-elongata_contig80373.15688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
VHDEVILEGPEETAEEALAETLNCMEQPWDGVGLKGLRVSV
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mRNA from alignment at H-elongata_contig80373:610..732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80373.15688.1 ID=mRNA_H-elongata_contig80373.15688.1|Name=mRNA_H-elongata_contig80373.15688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig80373:610..732- (Himanthalia elongata Himel1 dioecious)
GTGCACGACGAGGTTATCCTAGAGGGCCCCGAAGAAACGGCGGAGGAAGC
GTTAGCCGAGACCTTGAACTGCATGGAGCAGCCGTGGGATGGCGTCGGGC
TGAAGGGGCTGAGGGTGAGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig80373:610..732-

>mRNA_H-elongata_contig80373.15688.1 ID=mRNA_H-elongata_contig80373.15688.1|Name=mRNA_H-elongata_contig80373.15688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig80373:610..732- (Himanthalia elongata Himel1 dioecious)
GTGCACGACGAGGTTATCCTAGAGGGCCCCGAAGAAACGGCGGAGGAAGC
GTTAGCCGAGACCTTGAACTGCATGGAGCAGCCGTGGGATGGCGTCGGGC
TGAAGGGGCTGAGGGTGAGTGTGGTGCACGACGAGGTTATCCTAGAGGGC
CCCGAAGAAACGGCGGAGGAAGCGTTAGCCGAGACCTTGAACTGCATGGA
GCAGCCGTGGGATGGCGTCGGGCTGAAGGGGCTGAGGGTGAGTGTG
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