mRNA_H-elongata_contig80363.15687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80363.15687.1
Unique NamemRNA_H-elongata_contig80363.15687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.170e-53
Identity = 85/110 (77.27%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            +T  ES++NMGNIQASGYIARYFGSA+GA+GGAVLYNKD+WGWGL+IS LFWIN LVPL+LV+PLMPF  E+ KP++ GVLKRH +ELW LVQK AVW+PMIFVYLYNAL
Sbjct:  248 KTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISELFWINALVPLVLVMPLMPFLLEDKKPREKGVLKRHSDELWTLVQKTAVWRPMIFVYLYNAL 357          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.480e-29
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPK---PKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            RT  ES  + G +QASGYIAR FGSA+G+  GA++YN+ +WGWGLSI+ +  IN +VPL  V P +P+  E  K   P    V + H  E+W LVQK+ VW+PM FVY+YNA+
Sbjct:  231 RTKLESTKHRGTVQASGYIARAFGSAVGSTAGALVYNQANWGWGLSIAQIMLINAVVPLACVSPFIPYLKETVKTSLPTARHVWRTHWQEIWALVQKRVVWQPMTFVYIYNAM 343          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A7S1FNC7_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.390e-23
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            R+ +ES+ N G +Q+ GYI R+FGS +GA  GAV+YNKD W + L IS +F+IN   P++ ++PL+PF  E     +         +L+   Q KAVW+PM FVY+YNA+
Sbjct:  419 RSAYESLENRGQMQSKGYIVRFFGSVIGATIGAVVYNKDDWKFYLPISLVFFINAAFPMIFLLPLVPFLMEIETQCEPRNFVTQCKDLFHTAQLKAVWQPMTFVYIYNAM 528          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 3.210e-22
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            R+ HES    G IQA GYI R+ GS LG+  GAVLYN+D+WGWGL+   +F +N  VP +++ P M +  +    K   V      E+W  VQK+ +W+PM F++ YN +
Sbjct:  186 RSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQMFALNAFVPFVVLYPAMAYLRDASDLKPIPV-PIQCREIWGAVQKRNIWQPMAFIFAYNVM 294          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A1Z5K9Z9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Z9_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 9.860e-22
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHV----NELWDLVQKKAVWKPMIFVYLYNAL 330
            R+ +ES    G +Q+ GYI R+FGS +GA  GA++YNKD W W L I  +F+IN   PL+ ++P +P+  E     +T  L ++      EL+   Q +AVW+PM FVY+YNAL
Sbjct:  335 RSRYESQEKRGTMQSKGYIVRFFGSTVGATIGALVYNKDDWDWSLPIRLIFFINAAFPLIFLLPFVPYLLE----LETDCLPKNFWDQCRELFHTAQLRAVWQPMTFVYVYNAL 444          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.820e-20
Identity = 41/108 (37.96%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYN 324
            R   E+  + G +QA+ Y  R+ G+ +G +GGA+L+N+ +WGWGL+   +  I  ++P+L++ P + + +EE + K+T  +K  V ++WD +Q +AVW+PM FVY++N
Sbjct:  215 RARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNRGAWGWGLTFRQVCLIMSMMPVLVLGPAVVYLWEE-RSKETKGVKNQVRDIWDTIQLQAVWRPMAFVYIFN 321          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.490e-20
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGV-LKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            R+ +E     G +QA+ Y  R+FGS LGA  G ++YNKD+WGWGLS + + ++ G+ PLL V+P     +E+P  +     +     ++W+ V   AVW PM FVY+YN +
Sbjct:  265 RSRYEPSEGRGQMQATCYALRFFGSVLGAGTGTLVYNKDAWGWGLSFAQVCFVLGVFPLLFVVPFAYMVWEKPLSEAGAKSVPEQCRDIWNTVTLDAVWMPMTFVYIYNVM 375          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.870e-19
Identity = 39/106 (36.79%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   13 ESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            E    +G++Q+ GY+ARY G+ +GA  G +LYN+  W WGLSIS+++ +NGL  ++LV+P      +  +  +   LK  + ++W +VQ++ ++ PM F+ +YN L
Sbjct:  261 EPEGRVGHMQSVGYVARYVGNVVGATLGTILYNEKEWHWGLSISSIYLLNGLAAVVLVLPFTYHLSDPNQVLEARSLKEQLGDIWKMVQRRTIYVPMSFIAVYNML 366          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: A0A7S2XY88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY88_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.140e-18
Identity = 39/106 (36.79%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   13 ESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            E   + G  QA+ Y  R+ GS  G +GG +LYN  +WGWGL+   +  +NG++PL++++PL+   +E    +   V  +   ++W  ++++AVW+PM F+YLYN L
Sbjct:  178 EEEGSKGQAQATCYAVRFGGSVAGCLGGTLLYNSTNWGWGLTFPQVCLVNGVLPLVVLLPLLIPLWERQGSQGKSV-PQQCKDVWGTIEQRAVWQPMAFIYLYNLL 282          
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.390e-16
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    1 RTHHESIANMGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPLLLVIPLMPFFFEEPKPKKTGV-----LKRHVNELWDLVQKKAVWKPMIFVYLYNAL 330
            R+ HE     G++QA GY  R+ GS LG+  G +LYNKD WGWGLSI  LF++N + P+L + P +    E        V     L++   E++  +++KAV+ PM  +++YN L
Sbjct:  196 RSKHEPAETRGSMQAIGYSVRFVGSLLGSTMGLLLYNKDEWGWGLSIQQLFFLNAIFPVLFMGPWVWSLRETAVVTDGNVPIEQRLRQQCTEVFRALEQKAVYGPMGLIFIYNLL 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80363.15687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LI15_ECTSI1.170e-5377.27Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
A0A835YTY0_9STRA6.480e-2951.33Folate/biopterin transporter n=2 Tax=Tribonema min... [more]
A0A7S1FNC7_9STRA2.390e-2344.55Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A6V1WMI5_HETAK3.210e-2242.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5K9Z9_FISSO9.860e-2242.98Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
D7FZP1_ECTSI2.820e-2037.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TWA3_9STRA7.490e-2039.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TKM6_9STRA4.870e-1936.79Folate biopterin transporter n=2 Tax=Monodopsidace... [more]
A0A7S2XY88_9STRA2.140e-1836.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G1P4_ECTSI2.390e-1638.26Biopterin transport-related protein BT1 n=2 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80363contigH-elongata_contig80363:194..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog2880.D8LI15
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.330047-UTR-H-elongata_contig80363:193..2201622931209.330047-UTR-H-elongata_contig80363:193..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80363 194..220 +
1691679742.5510664-UTR-H-elongata_contig80363:193..2201691679742.5510664-UTR-H-elongata_contig80363:193..220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80363 194..220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.351329-CDS-H-elongata_contig80363:220..5231622931209.351329-CDS-H-elongata_contig80363:220..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80363 221..523 +
1691679742.5679975-CDS-H-elongata_contig80363:220..5231691679742.5679975-CDS-H-elongata_contig80363:220..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80363 221..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80363.15687.1prot_H-elongata_contig80363.15687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80363 221..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80363.15687.1

>prot_H-elongata_contig80363.15687.1 ID=prot_H-elongata_contig80363.15687.1|Name=mRNA_H-elongata_contig80363.15687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGNIQASGYIARYFGSALGAIGGAVLYNKDSWGWGLSISTLFWINGLVPL
LLVIPLMPFFFEEPKPKKTGVLKRHVNELWDLVQKKAVWKPMIFVYLYNA
L
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mRNA from alignment at H-elongata_contig80363:194..523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80363.15687.1 ID=mRNA_H-elongata_contig80363.15687.1|Name=mRNA_H-elongata_contig80363.15687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig80363:194..523+ (Himanthalia elongata Himel1 dioecious)
AGGACACACCATGAGTCCATAGCAAACATGGGCAACATCCAGGCCAGCGG CTACATCGCCCGGTACTTCGGGTCGGCGCTGGGCGCGATCGGGGGCGCCG TCCTCTACAACAAGGATTCGTGGGGCTGGGGGCTCTCAATATCTACCCTG TTCTGGATCAACGGCTTGGTCCCTCTGCTCCTGGTGATCCCGCTTATGCC GTTTTTCTTTGAGGAGCCCAAACCTAAGAAAACGGGGGTTCTGAAGCGGC ATGTCAACGAGCTTTGGGATCTGGTTCAGAAGAAGGCTGTTTGGAAGCCA ATGATCTTTGTGTACTTATACAACGCTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig80363:194..523+

>mRNA_H-elongata_contig80363.15687.1 ID=mRNA_H-elongata_contig80363.15687.1|Name=mRNA_H-elongata_contig80363.15687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig80363:194..523+ (Himanthalia elongata Himel1 dioecious)
ATGGGCAACATCCAGGCCAGCGGCTACATCGCCCGGTACTTCGGGTCGGC
GCTGGGCGCGATCGGGGGCGCCGTCCTCTACAACAAGGATTCGTGGGGCT
GGGGGCTCTCAATATCTACCCTGTTCTGGATCAACGGCTTGGTCCCTCTG
CTCCTGGTGATCCCGCTTATGCCGTTTTTCTTTGAGGAGCCCAAACCTAA
GAAAACGGGGGTTCTGAAGCGGCATGTCAACGAGCTTTGGGATCTGGTTC
AGAAGAAGGCTGTTTGGAAGCCAATGATCTTTGTGTACTTATACAACGCT
CTCATGGGCAACATCCAGGCCAGCGGCTACATCGCCCGGTACTTCGGGTC
GGCGCTGGGCGCGATCGGGGGCGCCGTCCTCTACAACAAGGATTCGTGGG
GCTGGGGGCTCTCAATATCTACCCTGTTCTGGATCAACGGCTTGGTCCCT
CTGCTCCTGGTGATCCCGCTTATGCCGTTTTTCTTTGAGGAGCCCAAACC
TAAGAAAACGGGGGTTCTGAAGCGGCATGTCAACGAGCTTTGGGATCTGG
TTCAGAAGAAGGCTGTTTGGAAGCCAATGATCTTTGTGTACTTATACAAC
GCTCTC
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