mRNA_H-elongata_contig80345.15686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80345.15686.1
Unique NamemRNA_H-elongata_contig80345.15686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80345.15686.1 vs. uniprot
Match: A0A6H5JVW4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.700e-14
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   13 QVARGGLFLGRAMVHTATIGGRLEGILVAAGALTMKAGGHCDGVLRYGHLHV-HVGLFFGA 192
            ++++G LFLG+AMV +AT+ GRLEGILV    LTM++ GHCDGVLRYG L+V H G   GA
Sbjct:   27 EISKGALFLGKAMVDSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNVQHGGKLTGA 87
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BLAST of mRNA_H-elongata_contig80345.15686.1 vs. uniprot
Match: D7FXK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.360e-11
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   13 QVARGGLFLGRAMVHTATIGGRLEGILVAAGALTMKAGGHCDGVLRYGHLHV-HVGLFFGA 192
            ++++G LFLG+AMV +AT+ GRLEGILV    L M++ GH DGV RYG L+V H G   GA
Sbjct:   73 EISKGALFLGKAMVGSATVAGRLEGILVVGNMLPMRSSGHWDGVFRYGQLNVQHGGKLTGA 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80345.15686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVW4_9PHAE4.700e-1460.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FXK9_ECTSI3.360e-1155.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80345contigH-elongata_contig80345:2501..2707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.234238-CDS-H-elongata_contig80345:2500..27071622931209.234238-CDS-H-elongata_contig80345:2500..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80345 2501..2707 -
1691679742.5354671-CDS-H-elongata_contig80345:2500..27071691679742.5354671-CDS-H-elongata_contig80345:2500..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80345 2501..2707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80345.15686.1prot_H-elongata_contig80345.15686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80345 2501..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80345.15686.1

>prot_H-elongata_contig80345.15686.1 ID=prot_H-elongata_contig80345.15686.1|Name=mRNA_H-elongata_contig80345.15686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
AFIRQVARGGLFLGRAMVHTATIGGRLEGILVAAGALTMKAGGHCDGVLR
YGHLHVHVGLFFGASLIC*
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mRNA from alignment at H-elongata_contig80345:2501..2707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80345.15686.1 ID=mRNA_H-elongata_contig80345.15686.1|Name=mRNA_H-elongata_contig80345.15686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig80345:2501..2707- (Himanthalia elongata Himel1 dioecious)
GCTTTCATCCGACAGGTGGCGAGGGGCGGGCTGTTCTTGGGCAGAGCCAT
GGTACATACGGCGACGATCGGGGGGCGGCTGGAAGGGATCCTCGTCGCCG
CCGGAGCGCTGACCATGAAGGCGGGGGGACACTGCGACGGAGTGCTGCGC
TATGGCCACCTACACGTCCACGTAGGTTTGTTCTTCGGCGCGTCTCTTAT
TTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80345:2501..2707-

>mRNA_H-elongata_contig80345.15686.1 ID=mRNA_H-elongata_contig80345.15686.1|Name=mRNA_H-elongata_contig80345.15686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig80345:2501..2707- (Himanthalia elongata Himel1 dioecious)
GCTTTCATCCGACAGGTGGCGAGGGGCGGGCTGTTCTTGGGCAGAGCCAT
GGTACATACGGCGACGATCGGGGGGCGGCTGGAAGGGATCCTCGTCGCCG
CCGGAGCGCTGACCATGAAGGCGGGGGGACACTGCGACGGAGTGCTGCGC
TATGGCCACCTACACGTCCACGTAGGTTTGTTCTTCGGCGCGTCTCTTAT
TTGCTGAGCTTTCATCCGACAGGTGGCGAGGGGCGGGCTGTTCTTGGGCA
GAGCCATGGTACATACGGCGACGATCGGGGGGCGGCTGGAAGGGATCCTC
GTCGCCGCCGGAGCGCTGACCATGAAGGCGGGGGGACACTGCGACGGAGT
GCTGCGCTATGGCCACCTACACGTCCACGTAGGTTTGTTCTTCGGCGCGT
CTCTTATTTGCTGA
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