mRNA_H-elongata_contig80322.15683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80322.15683.1
Unique NamemRNA_H-elongata_contig80322.15683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80322.15683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80322contigH-elongata_contig80322:387..1789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size404
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80322.15683.1prot_H-elongata_contig80322.15683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80322 517..1789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.8608582-UTR-H-elongata_contig80322:386..5161622931208.8608582-UTR-H-elongata_contig80322:386..516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80322 387..516 +
1691679742.3319767-UTR-H-elongata_contig80322:386..5161691679742.3319767-UTR-H-elongata_contig80322:386..516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80322 387..516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.8804152-CDS-H-elongata_contig80322:516..7271622931208.8804152-CDS-H-elongata_contig80322:516..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80322 517..727 +
1691679742.354715-CDS-H-elongata_contig80322:516..7271691679742.354715-CDS-H-elongata_contig80322:516..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80322 517..727 +
1622931208.8987043-CDS-H-elongata_contig80322:1727..17891622931208.8987043-CDS-H-elongata_contig80322:1727..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80322 1728..1789 +
1691679742.376315-CDS-H-elongata_contig80322:1727..17891691679742.376315-CDS-H-elongata_contig80322:1727..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80322 1728..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80322.15683.1

>prot_H-elongata_contig80322.15683.1 ID=prot_H-elongata_contig80322.15683.1|Name=mRNA_H-elongata_contig80322.15683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MTVVTFRRECLLTPVPGGDRSLISPTPPPLLLSTTRLLPSTEPSIKDLGG
DCPIELLTYRNTPSTALIEEGIPRVSSPRDRREDAQCAPFP
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mRNA from alignment at H-elongata_contig80322:387..1789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80322.15683.1 ID=mRNA_H-elongata_contig80322.15683.1|Name=mRNA_H-elongata_contig80322.15683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1403bp|location=Sequence derived from alignment at H-elongata_contig80322:387..1789+ (Himanthalia elongata Himel1 dioecious)
CCTCCCGAACACGGTAGAATGACCGGACCGTGCATCATATGATTGCCAGC
AATTTTTAGGTCTCGCTCTATTATACTTTCAATTGATTACGCAGAGATTA
CGGCTAATCCCCCTTGAGCGTACCGATGTCATGACTGTTGTTACATTTCG
GAGAGAATGCCTCCTCACCCCTGTTCCCGGGGGGGACAGGAGCCTAATAT
CCCCCACCCCACCCCCGCTTCTTCTGTCCACGACGCGACTTCTTCCCAGC
ACCGAACCGAGCATCAAAGACCTCGGGGGGGATTGTCCTATAGAGCTACT
TACTTATAGAAACACGCCGTCGACAGCTCTTATCGAAGAGGGTAAAAACA
GTCTTGAGAAATTCCGTATTTTTTGTTTTGTTTGTCCAGACACTTGTGGT
TGACAAATATATATATATATATACATATTTATTTATTTTCTTGAGCCAGG
AGGGTCTCGAAAAGTACCTTTAAACAGACAGGTTGTGAAATACCACAGGC
AGTCGAGAAGAGTGCCAGTGACAATGCGAGTGCGAGTCTTTCCTTTTTTA
TCCCTCGAATTCGAATCCGGGTTAATTAATCCCTTCTCCCCCCCCCCCAT
TCAGCTATTTAGAAGCCCGTAGACACTATTCGAGCCTGTATGCACCCGCA
GAACCAAGCAGACATCGACGTGTTCCCTATCGAGGCCTTGGGTAATCAGG
AAGGCGAGTAAGCGCTGGCCAGTCCTGGTTGGTTGGTTGGTTGAACTTGG
AGCGGTCGTCGGACGATAGCCTTGCACTGCACTCAAACACCAGATTTGGG
ATAATGAAGCTATTCAAAGTTTTTGTTGTTGTTTCAAAAGCGTTAACGGA
ACGGGGAGACGTAGTCGAGAAACTAAAGACTGTGCTGCTTCTGCACAACG
CTTAGATATTGGGAGTTCTCAAGAGCTTGGAGGCATGCGTGCCACTCCTT
ACGAACAATTATCAACAGGCACTTCAGTGTTTAGTGTGTTTTATGTATAT
ATCGTTGTTGGTACTATTTTTTGTTCGTTACAGGTGTTAATATTTCCAAA
ATAGACAGGAGAACAGCGGCAGACGTCACAACACAAGAAAAGCCTAAATC
TCCCATGAGCATCACTTGGTTAGGTTTTAGAGCGGGGAAGAGATGCGGGC
AAACTTTGAGTCGTTACTGTAATGTTATTTTGTGTCAAGAGCGTTTGTGT
GTGTATGTTTTTGTTTTGTTTTTTTGTTTACTTGTTTTCAGTGTGTATCT
ACCGCGGAGAATTCTTGCGTTCGACCGATCAATGGCCTCTCCACATCCTC
CCCCTCCCTCCCCTCGCCCCCCTCTCAAACACCCTCGCCAGGAATTCCGC
GGGTTTCCTCTCCTCGAGATCGAAGAGAAGACGCACAATGTGCGCCGTTT
CCG
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Coding sequence (CDS) from alignment at H-elongata_contig80322:387..1789+

>mRNA_H-elongata_contig80322.15683.1 ID=mRNA_H-elongata_contig80322.15683.1|Name=mRNA_H-elongata_contig80322.15683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig80322:387..1789+ (Himanthalia elongata Himel1 dioecious)
ATGACTGTTGTTACATTTCGGAGAGAATGCCTCCTCACCCCTGTTCCCGG
GGGGGACAGGAGCCTAATATCCCCCACCCCACCCCCGCTTCTTCTGTCCA
CGACGCGACTTCTTCCCAGCACCGAACCGAGCATCAAAGACCTCGGGGGG
GATTGTCCTATAGAGCTACTTACTTATAGAAACACGCCGTCGACAGCTCT
TATCGAAGAGGATGACTGTTGTTACATTTCGGAGAGAATGCCTCCTCACC
CCTGTTCCCGGGGGGGACAGGAGCCTAATATCCCCCACCCCACCCCCGCT
TCTTCTGTCCACGACGCGACTTCTTCCCAGCACCGAACCGAGCATCAAAG
ACCTCGGGGGGGATTGTCCTATAGAGCTACTTACTTATAGAAACACGCCG
TCGACAGCTCTTATCGAAGAGGGAATTCCGCGGGTTTCCTCTCCTCGAGA
TCGAAGAGAAGACGCACAATGTGCGCCGTTTCCGGAATTCCGCGGGTTTC
CTCTCCTCGAGATCGAAGAGAAGACGCACAATGTGCGCCGTTTCCG
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