mRNA_H-elongata_contig80271.15679.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE) HSP 1 Score: 178 bits (452), Expect = 5.530e-54 Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDCGFVV G AL VL YRLA+PC +K +RLVFGLS SCI E FN++LH++ +WGYLL L + R+ L EFAEA+ SG P+T WGF+DGTVR + RP QR+ YNGHKR HA KFQ +TPDG+ V L+GPV
Sbjct: 68 LLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 213
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.290e-53 Identity = 85/147 (57.82%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDCGFVV G AL VLLYRLA+PC +K +RLVFG+S SCI E FN++LH++ +WGYLL L + R+ L EFAEA+ SG P+T WGF+DGTVR + RP QR++YNGHKR HA KFQ +TPDG+ V L+GPV
Sbjct: 69 LLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKHWQRLLYNGHKRKHAMKFQGVITPDGLFVDLWGPV 214
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI) HSP 1 Score: 177 bits (448), Expect = 4.420e-53 Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDCGFVV G AL VLLYRLA+PC +K +RLVFGLS SCI + FN++LH++ KWG+LL L ++R+ L EFAEA++ + P+T WGF+DGTVR + RP QR YNGHKR HA KFQ +TPDG+ V ++GPV
Sbjct: 63 LLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIA-RPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPV 208
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JYJ9_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ9_9PHAE) HSP 1 Score: 175 bits (444), Expect = 8.480e-53 Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYG 435
+L VP +++T+CGFVV G AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++ KWG+LL L + R+V L FAEAV+ G P+T W F+DGTVR + RP +QR YNG+KR HA KFQ +TPDG+ V LYG
Sbjct: 64 LLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYG 207
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.520e-52 Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDC FVV G AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++ +WGYLL L + R+ L EFAEA+ SG P+T WGF+DGTVR + RP QR+ YNGHKR HA KFQ +TPDG+ V L+GPV
Sbjct: 44 LLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 189
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI) HSP 1 Score: 178 bits (451), Expect = 2.540e-52 Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDCGF V G AL VLLYRLA+PC +K +RLVFGLS SCI+E FN++LH++ KWG+LL L ++R+ L EFAEA++ + P+T WGF+DGTVR + RP QR YNGHKR HA KFQ +TPDG+ V ++GPV
Sbjct: 63 LLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIA-RPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPV 208
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE) HSP 1 Score: 173 bits (438), Expect = 5.850e-51 Identity = 82/145 (56.55%), Postives = 105/145 (72.41%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYG 435
+L VP +++TDCGFVV G AL VLLYRLA+PC ++ +RLVFG S SCI E FN++LH++ KWG+LL L + R+V L FAEAV+ G P+T W F+DGTVR + RP +QR YNG+KR HA KFQ +TPDG+ V LYG
Sbjct: 115 LLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYG 258
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5K9A6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.760e-50 Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
+L +P ++TDC F+V G AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++ KWG+LL ++R+ L EFAEA++ +G P+T+ WGF+DGTVR + RP QR YNGHKR HA KFQ +TPDG+ V L+GPV
Sbjct: 189 LLLIPAFIRTDCVFIVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFLDPKWGWLLSDDVERLKPRLVEFAEAIYNAGCPLTQCWGFIDGTVRGIA-RPIRFQRWYYNGHKRKHAIKFQGVVTPDGLFVDLWGPV 334
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE) HSP 1 Score: 169 bits (427), Expect = 4.910e-48 Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 1
Query: 1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLY 432
+L VP +++T+CGFVV G AL VLLYRLA+PC +K +RL FGLS SCI E FN++LH++ KWG+LL L + R+V L FAEAV+ G P+T W F+DGTVR + RP ++R YNG+KR HA KFQ +TPDG+ V LY
Sbjct: 133 LLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLY 275
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D7G2E5_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E5_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.070e-45 Identity = 73/145 (50.34%), Postives = 99/145 (68.28%), Query Frame = 1
Query: 4 LGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGP 438
L VP +++TDCG+V+ G AL VLLYRLA+PC K +RL+F S SC+ E FN++LH+++ WG +L L + R+V L FAE + G P+ W F+DGTVR +C R QR +NGHKRYHA K Q +TPDG++V L+GP
Sbjct: 57 LCVPDMIRTDCGYVIAGRTALCVLLYRLAFPCRYKDMRLIFHRSDSCLCETFNYMLHFMNETWGSMLTLDLGRLVPRLDFFAERLQTWGCPLPNCWAFIDGTVRAIC-RTIREQRAFFNGHKRYHAIKLQSVVTPDGIMVDLFGP 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80271.15679.1 >prot_H-elongata_contig80271.15679.1 ID=prot_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINback to top mRNA from alignment at H-elongata_contig80271:990..1656+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80271.15679.1 ID=mRNA_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig80271:990..1656+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80271:990..1656+ >mRNA_H-elongata_contig80271.15679.1 ID=mRNA_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig80271:990..1656+ (Himanthalia elongata Himel1 dioecious)back to top |