mRNA_H-elongata_contig80241.15677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80241.15677.1
Unique NamemRNA_H-elongata_contig80241.15677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.440e-43
Identity = 79/159 (49.69%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFSG-QNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGRQW 477
            P + A V  S Y E W  AMR E +GH  TGTFS     P G   +++KW F++K+++DG I K KARLV RGF K   VDYF + +  PS +SIK+ +A+A +    L + DV QAF  A LD DVF++LP GCG +S  VVK +RA+YG+KQ+GRQW
Sbjct:  118 PMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 276          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.010e-42
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ + + SK+AEVW  AM AE EG  + GTFS    +P G NVI A+W F +K+D  G I KAKARLV +GF +KH +DY  TF+ T + +SI++ +A+A + +  L +LD+ QAFV+  LD  VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASR 323          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.260e-42
Identity = 77/157 (49.04%), Postives = 111/157 (70.70%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ + + SKYA++W  AM AE+EG  + GTF+    +P G NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 871          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.350e-42
Identity = 79/157 (50.32%), Postives = 111/157 (70.70%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ + + SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +SI++ +A+A + D  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  780 PGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 936          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.220e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 574          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.280e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 638          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.280e-41
Identity = 78/157 (49.68%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASR 782          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.220e-41
Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ + + SKYA++W  AM AE+EG  + GTF+    +P   NVI A+W F +K+D  G I KAKARLV +GF +K+ VDY ETF+ T + +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+KQA R
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 604          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.240e-40
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 1
Query:    4 PKSWADVKISKYAEVWRSAMRAELEGHDQTGTFS-GQNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGR 471
            P S+ +   SK+A +W  AM AE+EG  + GTF+    IP G NVI A+W F +K+D  G I KAKARLV +GF +KH VDY ETF+ T + +SI++ +A+A + +  L +LD+ QAF ++ LD +V MKLP GC   SG +V+L+++LYG+KQA R
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASR 369          
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.090e-40
Identity = 66/156 (42.31%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   10 SWADVKISKYAEVWRSAMRAELEGHDQTGTFSG-QNIPAGINVITAKWGFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMAIAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALYGVKQAGRQ 474
            ++ DV  SKY   W +AM+ E++ HD+TGTF+  + +P G   I +KW FS+K++  G I   KAR+V RGF +   +D+  + +A+PS +SIK  +A+A +    L + DV QA++ A L  +++++ P GCG  SG VVK++RALYG+KQ+GR+
Sbjct:    2 TYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSGRE 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80241.15677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFJ3_9PHAE3.440e-4349.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPV1_9PHAE2.010e-4250.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE5.260e-4249.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE5.350e-4250.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDZ0_9PHAE1.220e-4149.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.280e-4149.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.280e-4149.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKK1_9PHAE3.220e-4148.41Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JV80_9PHAE2.240e-4048.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE3.090e-4042.31Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80241contigH-elongata_contig80241:2411..2896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score126.3
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog120017.I2FSX8
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.2129986-CDS-H-elongata_contig80241:2410..28961622931208.2129986-CDS-H-elongata_contig80241:2410..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80241 2411..2896 +
1691679742.1131685-CDS-H-elongata_contig80241:2410..28961691679742.1131685-CDS-H-elongata_contig80241:2410..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80241 2411..2896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80241.15677.1prot_H-elongata_contig80241.15677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80241 2411..2896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80241.15677.1

>prot_H-elongata_contig80241.15677.1 ID=prot_H-elongata_contig80241.15677.1|Name=mRNA_H-elongata_contig80241.15677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
APKSWADVKISKYAEVWRSAMRAELEGHDQTGTFSGQNIPAGINVITAKW
GFSFKSDRDGFITKAKARLVERGFGKKHCVDYFETFAATPSVSSIKVAMA
IAFQNDWPLYYLDVTQAFVRAPLDIDVFMKLPNGCGRRSGDVVKLDRALY
GVKQAGRQWSA*
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mRNA from alignment at H-elongata_contig80241:2411..2896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80241.15677.1 ID=mRNA_H-elongata_contig80241.15677.1|Name=mRNA_H-elongata_contig80241.15677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig80241:2411..2896+ (Himanthalia elongata Himel1 dioecious)
GCCCCAAAGAGTTGGGCGGACGTGAAAATTTCCAAGTACGCAGAGGTTTG GCGTAGTGCGATGCGGGCAGAGTTGGAGGGGCATGATCAGACTGGTACGT TTTCCGGTCAAAATATCCCAGCAGGCATAAATGTCATTACGGCAAAGTGG GGGTTTTCTTTCAAGAGTGACCGCGATGGTTTTATCACCAAGGCGAAAGC GAGGTTGGTTGAGCGCGGGTTTGGGAAGAAGCACTGTGTGGACTATTTTG AGACGTTTGCCGCGACCCCGTCCGTATCATCCATCAAGGTGGCGATGGCC ATTGCCTTCCAAAACGACTGGCCACTTTATTATCTCGACGTAACACAAGC GTTTGTTAGAGCCCCCCTGGACATCGACGTTTTCATGAAGCTTCCCAACG GTTGTGGTAGGAGGTCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTAC GGGGTGAAACAGGCGGGTCGCCAGTGGTCGGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig80241:2411..2896+

>mRNA_H-elongata_contig80241.15677.1 ID=mRNA_H-elongata_contig80241.15677.1|Name=mRNA_H-elongata_contig80241.15677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig80241:2411..2896+ (Himanthalia elongata Himel1 dioecious)
GCCCCAAAGAGTTGGGCGGACGTGAAAATTTCCAAGTACGCAGAGGTTTG
GCGTAGTGCGATGCGGGCAGAGTTGGAGGGGCATGATCAGACTGGTACGT
TTTCCGGTCAAAATATCCCAGCAGGCATAAATGTCATTACGGCAAAGTGG
GGGTTTTCTTTCAAGAGTGACCGCGATGGTTTTATCACCAAGGCGAAAGC
GAGGTTGGTTGAGCGCGGGTTTGGGAAGAAGCACTGTGTGGACTATTTTG
AGACGTTTGCCGCGACCCCGTCCGTATCATCCATCAAGGTGGCGATGGCC
ATTGCCTTCCAAAACGACTGGCCACTTTATTATCTCGACGTAACACAAGC
GTTTGTTAGAGCCCCCCTGGACATCGACGTTTTCATGAAGCTTCCCAACG
GTTGTGGTAGGAGGTCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTAC
GGGGTGAAACAGGCGGGTCGCCAGTGGTCGGCATAAGCCCCAAAGAGTTG
GGCGGACGTGAAAATTTCCAAGTACGCAGAGGTTTGGCGTAGTGCGATGC
GGGCAGAGTTGGAGGGGCATGATCAGACTGGTACGTTTTCCGGTCAAAAT
ATCCCAGCAGGCATAAATGTCATTACGGCAAAGTGGGGGTTTTCTTTCAA
GAGTGACCGCGATGGTTTTATCACCAAGGCGAAAGCGAGGTTGGTTGAGC
GCGGGTTTGGGAAGAAGCACTGTGTGGACTATTTTGAGACGTTTGCCGCG
ACCCCGTCCGTATCATCCATCAAGGTGGCGATGGCCATTGCCTTCCAAAA
CGACTGGCCACTTTATTATCTCGACGTAACACAAGCGTTTGTTAGAGCCC
CCCTGGACATCGACGTTTTCATGAAGCTTCCCAACGGTTGTGGTAGGAGG
TCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTACGGGGTGAAACAGGC
GGGTCGCCAGTGGTCGGCATAA
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