mRNA_H-elongata_contig80186.15673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80186.15673.1
Unique NamemRNA_H-elongata_contig80186.15673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: W6UWI8_ECHGR (GDP-fucose transporter n=2 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UWI8_ECHGR)

HSP 1 Score: 54.3 bits (129), Expect = 7.200e-7
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 LTRSRHLEALRGFLDLEMAEETKSRWHI---AGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            LTR   L  +RG    ++  E +S +++    GVV+LYW+VSISLVF+NK ++S ++  + +P+F+TW Q
Sbjct:   89 LTRRLFLITIRGIHIKKILAEARSVYNVKRVCGVVSLYWAVSISLVFINKWLLSNSDISLDIPLFITWFQ 158          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6F9DT87_9ASCI (GDP-fucose transporter 1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DT87_9ASCI)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   82 IAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            + GVVALYWSVSISLVFLNK ++  ++ K++ P+FVTW Q
Sbjct:   24 VVGVVALYWSVSISLVFLNKYLLKSDDLKLNAPLFVTWFQ 63          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A482UTD3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UTD3_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 3.100e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   64 TKSRWHIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTW 192
            T +  H+  VVA YW VSIS+V+LNK+++S ++  ++ P+FVTW
Sbjct:    9 TPTHLHVVSVVAAYWVVSISMVYLNKILLSNDQTSITAPLFVTW 52          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: C1C273_CALCM (GDP-fucose transporter 1 n=1 Tax=Caligus clemensi TaxID=344056 RepID=C1C273_CALCM)

HSP 1 Score: 52.4 bits (124), Expect = 3.300e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   91 VVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 198
            VV LYW +SISLVF+NK ++SG+E +  P+F+TW Q
Sbjct:   15 VVVLYWVISISLVFINKALLSGSETIDAPLFITWFQ 50          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: B3RIC0_TRIAD (GDP-fucose transporter 1 n=3 Tax=Trichoplax TaxID=10227 RepID=B3RIC0_TRIAD)

HSP 1 Score: 51.2 bits (121), Expect = 8.600e-6
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   52 MAEETKSR-WHIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            M+E  +SR   IA VV+ YW +SIS+VF+NK ++S N+ K++ PIFVTW Q
Sbjct:    1 MSESLRSRSLKIATVVSAYWFISISMVFVNKYLLSSNDLKLNAPIFVTWFQ 51          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: D7G6N8_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N8_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.640e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   58 EETKSRWHIAGVVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 198
            E +K+   + GV+A YW VSISLV++NK I+S     S PIF+TWSQ
Sbjct:    4 ESSKAMLRVTGVIAQYWVVSISLVYINKFILSEQ---SAPIFITWSQ 47          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6S9GXW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GXW0_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 8.640e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   52 MAEETKSRWHIAGVVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 198
            M    + + ++  VVA YW VSIS+V+LNK +++GNE +S P+FVTW Q
Sbjct:    1 MTNADRGKNYVLSVVASYWFVSISMVYLNKYLMNGNE-LSAPLFVTWYQ 48          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A7S2LFH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LFH9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.020e-5
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   79 HIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            +IA VVA YW VSIS+V+LNKV++S  E  ++ P+FVTW Q
Sbjct:   46 YIASVVAAYWFVSISMVYLNKVLMSSEEVSINAPLFVTWFQ 86          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A4D9D3X9_9STRA (TPT domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3X9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.620e-5
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   79 HIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            HIA VVA YW VSIS+V+LNKV+++ +E  +  P+F+TW Q
Sbjct:    3 HIASVVAAYWIVSISMVYLNKVLMTNSEFSIPAPLFMTWFQ 43          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6J8BY11_MYTCO (SLC35C1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BY11_MYTCO)

HSP 1 Score: 49.3 bits (116), Expect = 1.630e-5
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   82 IAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 198
            IA VVA YW VSIS+VFLNK ++S  + K++ P+F+TW Q
Sbjct:   24 IAAVVATYWCVSISMVFLNKYLLSSEDLKLNAPLFITWYQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W6UWI8_ECHGR7.200e-741.43GDP-fucose transporter n=2 Tax=Echinococcus granul... [more]
A0A6F9DT87_9ASCI1.310e-662.50GDP-fucose transporter 1 n=1 Tax=Phallusia mammill... [more]
A0A482UTD3_9ARCH3.100e-647.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
C1C273_CALCM3.300e-658.33GDP-fucose transporter 1 n=1 Tax=Caligus clemensi ... [more]
B3RIC0_TRIAD8.600e-652.94GDP-fucose transporter 1 n=3 Tax=Trichoplax TaxID=... [more]
D7G6N8_ECTSI8.640e-653.19TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6S9GXW0_HETAK8.640e-648.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LFH9_9STRA1.020e-558.54Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A4D9D3X9_9STRA1.620e-556.10TPT domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A6J8BY11_MYTCO1.630e-557.50SLC35C1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80186contigH-elongata_contig80186:75..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.8964713-CDS-H-elongata_contig80186:74..2811622931207.8964713-CDS-H-elongata_contig80186:74..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80186 75..281 -
1691679742.007872-CDS-H-elongata_contig80186:74..2811691679742.007872-CDS-H-elongata_contig80186:74..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80186 75..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80186.15673.1prot_H-elongata_contig80186.15673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80186 75..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80186.15673.1

>prot_H-elongata_contig80186.15673.1 ID=prot_H-elongata_contig80186.15673.1|Name=mRNA_H-elongata_contig80186.15673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LTRSRHLEALRGFLDLEMAEETKSRWHIAGVVALYWSVSISLVFLNKVIV
SGNEKVSVPIFVTWSQVR*
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mRNA from alignment at H-elongata_contig80186:75..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80186.15673.1 ID=mRNA_H-elongata_contig80186.15673.1|Name=mRNA_H-elongata_contig80186.15673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig80186:75..281- (Himanthalia elongata Himel1 dioecious)
CTTACCCGGAGTCGCCACCTGGAGGCCTTGCGAGGGTTTCTCGACTTGGA AATGGCGGAGGAAACTAAGTCCCGATGGCACATTGCGGGCGTGGTCGCTC TTTATTGGAGCGTCAGCATATCGCTTGTGTTCCTGAATAAGGTAATTGTG TCGGGCAACGAAAAGGTTTCGGTGCCTATTTTCGTCACGTGGTCACAGGT GAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig80186:75..281-

>mRNA_H-elongata_contig80186.15673.1 ID=mRNA_H-elongata_contig80186.15673.1|Name=mRNA_H-elongata_contig80186.15673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig80186:75..281- (Himanthalia elongata Himel1 dioecious)
CTTACCCGGAGTCGCCACCTGGAGGCCTTGCGAGGGTTTCTCGACTTGGA
AATGGCGGAGGAAACTAAGTCCCGATGGCACATTGCGGGCGTGGTCGCTC
TTTATTGGAGCGTCAGCATATCGCTTGTGTTCCTGAATAAGGTAATTGTG
TCGGGCAACGAAAAGGTTTCGGTGCCTATTTTCGTCACGTGGTCACAGGT
GAGATAACTTACCCGGAGTCGCCACCTGGAGGCCTTGCGAGGGTTTCTCG
ACTTGGAAATGGCGGAGGAAACTAAGTCCCGATGGCACATTGCGGGCGTG
GTCGCTCTTTATTGGAGCGTCAGCATATCGCTTGTGTTCCTGAATAAGGT
AATTGTGTCGGGCAACGAAAAGGTTTCGGTGCCTATTTTCGTCACGTGGT
CACAGGTGAGATAA
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