mRNA_H-elongata_contig80111.15669.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE) HSP 1 Score: 279 bits (714), Expect = 4.200e-86 Identity = 177/264 (67.05%), Postives = 193/264 (73.11%), Query Frame = 1
Query: 1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVE----TGWEGGLIAAPEMTRDS-----ESWEM--------GFETENGRA-DTSGA-SGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
+CL +S RS+AFFEGLKTSQDLQ HVTGACTTLYQL RESM ME++V+AGPMR+PQLQRRR NL++LEATLELVA VQQSQAAI+ GLLAAEDYLGALDILQSAKSTVKNELGKL SL+NVGRQL EYEELVS LLSNRFV+LAVT PV+ T G RD SWE G NGR D GA S DELRR LELVVQGLLRLGEMERVLG+VQ+R+SEDLKLIIR V
Sbjct: 317 VCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQL---------RESMRCMEKDVLAGPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIE---GLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVALAVTIPVDVVGSTAAGGAATGGSGNGRDDPAAGLSSWETAAAADHDGGDAATNGRGGDAGGAISAGGDELRRDLELVVQGLLRLGEMERVLGIVQDRVSEDLKLIIRTV 568
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI) HSP 1 Score: 278 bits (712), Expect = 3.550e-83 Identity = 176/266 (66.17%), Postives = 193/266 (72.56%), Query Frame = 1
Query: 1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVE-----------TGWEGGLIAAPEMTRDSESWEMGFET--ENGRADTSGASGSR--------DELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
+CL +S RS+AFFEGLKTSQDLQ HVTGACTTLYQL RESM ME++V+AGPMR+PQLQRRR NL++LEATLELVA VQQSQAAI+ GLLAAEDYLGALDILQSAKSTVKNELGKL SL+NVGRQL EYEELVS LLSNRFV+LAVT PV+ TG G P SWE T E G A T+G G DE+RR LELVVQGLLRLGEMERVLGVVQ+R+SEDLKLIIR V
Sbjct: 232 VCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQL---------RESMRCMEKDVLAGPMRVPQLQRRRGNLSSLEATLELVARVQQSQAAIE---GLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVALAVTIPVDVVGSAAAGGAATGGNGNGRGDP--ADGLSSWETAAATDREGGDAATNGRGGEAGGAISAGGDEMRRDLELVVQGLLRLGEMERVLGVVQDRVSEDLKLIIRTV 483
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA) HSP 1 Score: 134 bits (337), Expect = 4.200e-32 Identity = 92/240 (38.33%), Postives = 139/240 (57.92%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAV-TTPVETGWEGGLIAAPEMTRDSESWEMGFETENGRADTSGASGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
+SARS+AF EGL+T+ L+ V+ ACT++ QL R +M+R+E EVV +R+PQL +R+ NL +L+ LELV +++S+ A++ LLAA+DY GALD+L+ A+ + +L + L+ RQ++EYE+L +L++R +S+A T P E G GG A + +L L VVQ + RLG++E+VL + +ERL EDLKLIIR V
Sbjct: 275 ISARSDAFLEGLETTHALRKVVSQACTSVQQL---------RAAMARIESEVVTKAIRVPQLAQRQQNLMSLQGYLELVQSIERSKLAVEP---LLAADDYSGALDVLEGARRALARDLSDMHCLRAASRQMSEYEDLAFAMLTSRLLSVAQHTRPGEAGGHGGDDAXXXXXXXXXA----------------------DLEAALVPVVQAVERLGKLEKVLDMFEERLLEDLKLIIRTV 480
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7S2BIV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BIV8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.280e-19 Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTT 480
+CL +S+R ++FFE L QDLQ+ VT ACT + L R + M+Q +V+G M++PQL RR+ NL AL + LE V V +++ A++A L AED+ GAL IL A+ L ++ + + +QL EYE L+ +FV++AV T
Sbjct: 35 VCLLRQISSRQDSFFEALSNLQDLQLDVTQACTKVNTL---------RRGVRGMQQNMVSGTMKVPQLARRKSNLNALHSVLEQVLKVLEAKDAVEA---LFKAEDFAGALSILTEARKMTSESLHNVRCVHVLDKQLMEYELSAIRFLATQFVNVAVDT 182
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: W5U8J1_ICTPU (Vacuolar protein sorting-associated protein 54 n=7 Tax=Siluroidei TaxID=1489793 RepID=W5U8J1_ICTPU) HSP 1 Score: 67.4 bits (163), Expect = 3.940e-9 Identity = 44/149 (29.53%), Postives = 81/149 (54.36%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVS 465
+S RS AFF + + ++LQ + A +A R RE + M + ++ GP+R + R N L L+L+A VQQ+Q +Q LL+ +++GAL+++ + K ++ EL + S +++G QL E E+L+ +++ F +
Sbjct: 232 ISLRSEAFFHAMSSQRELQEQLCEAA---------DAVRALREHTAGMGRTMIRGPLRALRHTVTRRNCVTLHGKLKLMAAVQQTQPTVQL---LLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMMVADFTT 368
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A553Q812_9TELE (Vacuolar protein sorting-associated protein 54 n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553Q812_9TELE) HSP 1 Score: 67.0 bits (162), Expect = 5.310e-9 Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
+S RS+AFF + + LQ ++ ++ +LR A + R+ + P+R+ + R R+N AL+A L+L+A +QQ+Q +Q LLA ++ GAL+++ ++K ++ EL + S +++G QL E E L+ +++ F S A
Sbjct: 237 ISLRSDAFFHAMSSQHQLQDRLSETADSVSRLRARTA------GIHRV---LCRAPLRVLRDVRSRNNCVALQAKLQLMAALQQTQPTVQL---LLAGGEFTGALELISTSKEVLQQELQGIHSFRHLGSQLCEMERLIDKMMVADFSSYA 375
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: UPI0019C61E13 (vacuolar protein sorting-associated protein 54 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C61E13) HSP 1 Score: 67.0 bits (162), Expect = 5.320e-9 Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVS 465
+S RS AFF + + +LQ + A A R RE + M + + GP+R + R N AL L+L+A VQQ+Q +Q LL+ +++GAL+++ + K ++ EL + S +++G QL E E+L+ +++ F +
Sbjct: 232 ISLRSEAFFHAMSSQHELQEQLCEAAA---------AVRALREHTAGMGRTMCQGPLRALRHAVTRKNCVALHGKLKLMAAVQQTQPTVQL---LLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMMVADFTT 368
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A3F2S2L8_9STRA (Vacuolar protein sorting-associated protein 54 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2L8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.440e-9 Identity = 53/244 (21.72%), Postives = 119/244 (48.77%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVETGWEGGLIAAPEMTRDSESWEMGFETENGRADTSG-----ASGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
+S+RS+ FFE + ++ + AC + L R++M R+ + + I L +R+ + L + +V V+ +++A++A L+ +DY GAL++++S+++ +++ L + L ++ + Y +S +S RF+S +I +PE W + E AD SG A+ +D +++ + +V L RL ++ + ++L+E+++++++ V
Sbjct: 156 VSSRSDRFFEASADQEVMKQSIKVACDQVATL---------RKTMDRLRNLLADKTLDIVNLHQRQKRIKELHDLMAMVEEVKGAESAVEA---LVQCQDYTGALNLIESSQTILRDHLQGIHGLSSLSEKFRGYRAFISTQISQRFIS--------------VITSPE-------WTFHDDVEPSYADPSGKRKNSANNDKDNVQQETKCLVDVLFRLDALDNTVQTYLDQLNEEIRVVVKTV 366
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7K8X2L8_9PICI (VPS54 protein (Fragment) n=2 Tax=Ramphastidae TaxID=57381 RepID=A0A7K8X2L8_9PICI) HSP 1 Score: 65.5 bits (158), Expect = 1.640e-8 Identity = 43/151 (28.48%), Postives = 83/151 (54.97%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
+S RS AFF + + +LQ ++ + +A + RE +S+++Q V G +R+ +L R N L+L+A V Q+Q +Q LL+ +++GALD++ + + ++ EL + S +++G QL E E+L+ +++ F + A
Sbjct: 224 ISLRSEAFFHAMTSQHELQDYLR---------KTSQAVKLLREKISKIDQVVCEGSLRVLRLSLTRSNCIKAYNKLKLMATVHQTQPMVQL---LLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFAAYA 362
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7K6AKZ6_UPUEP (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6AKZ6_UPUEP) HSP 1 Score: 64.3 bits (155), Expect = 4.260e-8 Identity = 42/151 (27.81%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
+S RS AFF + + +LQ ++ + +A + RE +S+++Q + G +R+ +L R+N L+L+A V Q+Q +Q LL+ +++GALD++ + + ++ EL + S +++G QL E E+L+ +++ F + A
Sbjct: 224 ISLRSEAFFHAMTSQHELQDYLR---------KTSQAVKLLREKISKIDQVMCEGSLRVLRLSLTRNNCIKAYNKLKLMATVHQTQPTVQL---LLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYA 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80111.15669.1 >prot_H-elongata_contig80111.15669.1 ID=prot_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESback to top mRNA from alignment at H-elongata_contig80111:477..2728- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80111.15669.1 ID=mRNA_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-elongata_contig80111:477..2728- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80111:477..2728- >mRNA_H-elongata_contig80111.15669.1 ID=mRNA_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig80111:477..2728- (Himanthalia elongata Himel1 dioecious)back to top |