mRNA_H-elongata_contig80084.15668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80084.15668.1
Unique NamemRNA_H-elongata_contig80084.15668.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.320e-15
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
            WIGDS ++ H T+D + +YN R P   +  +   DG +L+ EC G++DVVFH R D  +T+ D++ VPDL F+L S + +
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVI 95          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.540e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   16 GMAFAAQ---SQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFH-----GRSDEPITLCDVSHVPDLKFNLFSFH 294
            G A +AQ   S+     FW  DSGA+    + + +M+++R  P GK  +   +GT LR++C+G +++ FH     G  D  + + DV  VP + FNLFS H
Sbjct:  623 GFALSAQNPLSRFGREKFWA-DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLH 722          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-7
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   52 NDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
            ND WI DSGAS HMT +AS +++   P     +V  +DGT  ++  IG++ +       + ITL +V HVP L  NL S  KL
Sbjct:   92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKL 167          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA)

HSP 1 Score: 56.2 bits (134), Expect = 5.160e-7
Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1
Query:   22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
            A  A S  A N+ W  DSGAS H+TN    + ++ +P  G   +   DG  + I   G   +    R    +TL  + H+P+LK+NL S  KL
Sbjct:  306 AMVAASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPARK---LTLDQILHIPELKYNLLSISKL 394          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-6
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 300
            W  DSGAS HM ND     ++++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HKL
Sbjct:  271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA)

HSP 1 Score: 55.1 bits (131), Expect = 1.290e-6
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 297
            A  A  +  ++  W  DSGAS H+TNDAS +  VR P  G+  V T++GT L I+ +G  ++     + + + L  + HVP +  NL S  K
Sbjct:  297 ALLANPETLYDASWYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO)

HSP 1 Score: 55.1 bits (131), Expect = 1.310e-6
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 300
            W  DSGAS HM ND     ++++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HKL
Sbjct:  271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-6
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 297
            A  A  +  ++  W  DSGAS H+TNDAS +++ + P  G  +V  ++GT L I  +G  ++  H  S + ++L ++ HVP +  NL S  K
Sbjct:  309 ALVAAPETLYDAAWYPDSGASHHITNDASNLHSHQ-PYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSK 397          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI)

HSP 1 Score: 53.9 bits (128), Expect = 3.160e-6
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   55 DFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
            D W+ DSGA+ H+ +D + ++   TP    + +   DG+R+ ++  G + +      ++ I+L +V HVPD KFNL S HKL
Sbjct:  275 DKWLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL------NDEISLLNVLHVPDFKFNLISVHKL 349          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 5.630e-6
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
            WI DSGAS HMT +AS +++   P     +V  +DGT  ++  IG+I +         +TL +V +VP L  NL S  KL
Sbjct:   74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE7.320e-1542.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE4.540e-1135.64Integrase catalytic domain-containing protein n=5 ... [more]
A0A834U2Q9_9FABA3.800e-740.96F-box protein interaction domain protein n=1 Tax=S... [more]
A0A2I0VFZ4_9ASPA5.160e-734.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A336MT82_CULSO1.270e-637.80CSON006917 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A835CFI5_9FABA1.290e-635.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A336N465_CULSO1.310e-637.80CSON011514 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A834WYN7_9FABA1.730e-634.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A803LD36_CHEQI3.160e-635.37Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A834T3C8_9FABA5.630e-638.75Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80084contigH-elongata_contig80084:1732..2031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.2967703-CDS-H-elongata_contig80084:1731..20131622931207.2967703-CDS-H-elongata_contig80084:1731..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80084 1732..2013 -
1691679741.7601602-CDS-H-elongata_contig80084:1731..20131691679741.7601602-CDS-H-elongata_contig80084:1731..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80084 1732..2013 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.3374865-UTR-H-elongata_contig80084:2013..20311622931207.3374865-UTR-H-elongata_contig80084:2013..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80084 2014..2031 -
1691679741.7806625-UTR-H-elongata_contig80084:2013..20311691679741.7806625-UTR-H-elongata_contig80084:2013..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80084 2014..2031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80084.15668.1prot_H-elongata_contig80084.15668.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80084 1732..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80084.15668.1

>prot_H-elongata_contig80084.15668.1 ID=prot_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MAFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDG
TRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL
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mRNA from alignment at H-elongata_contig80084:1732..2031-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80084.15668.1 ID=mRNA_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig80084:1732..2031- (Himanthalia elongata Himel1 dioecious)
TCTGTGGATTTTAGTGGTATGGCATTTGCAGCGCAATCACAGGATGCTCA TAACGATTTTTGGATAGGTGACAGCGGCGCATCGTGTCACATGACGAATG ACGCATCCAAAATGTATAATGTGAGGACTCCTCCTTTTGGTAAACATGAA GTAATGACTAGTGATGGGACGAGATTAAGGATAGAATGTATCGGTAACAT CGACGTAGTTTTTCATGGGAGGAGCGATGAACCGATCACGTTATGCGATG TATCGCACGTACCAGATTTGAAGTTCAATCTTTTTTCGTTTCACAAGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig80084:1732..2031-

>mRNA_H-elongata_contig80084.15668.1 ID=mRNA_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig80084:1732..2031- (Himanthalia elongata Himel1 dioecious)
ATGGCATTTGCAGCGCAATCACAGGATGCTCATAACGATTTTTGGATAGG
TGACAGCGGCGCATCGTGTCACATGACGAATGACGCATCCAAAATGTATA
ATGTGAGGACTCCTCCTTTTGGTAAACATGAAGTAATGACTAGTGATGGG
ACGAGATTAAGGATAGAATGTATCGGTAACATCGACGTAGTTTTTCATGG
GAGGAGCGATGAACCGATCACGTTATGCGATGTATCGCACGTACCAGATT
TGAAGTTCAATCTTTTTTCGTTTCACAAGTTAATGGCATTTGCAGCGCAA
TCACAGGATGCTCATAACGATTTTTGGATAGGTGACAGCGGCGCATCGTG
TCACATGACGAATGACGCATCCAAAATGTATAATGTGAGGACTCCTCCTT
TTGGTAAACATGAAGTAATGACTAGTGATGGGACGAGATTAAGGATAGAA
TGTATCGGTAACATCGACGTAGTTTTTCATGGGAGGAGCGATGAACCGAT
CACGTTATGCGATGTATCGCACGTACCAGATTTGAAGTTCAATCTTTTTT
CGTTTCACAAGTTA
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