mRNA_H-elongata_contig80040.15661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80040.15661.1
Unique NamemRNA_H-elongata_contig80040.15661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.170e-35
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            T E    AEL+TLRG+ AGTLT +LSCEGVL WWK+W   YPLLARAARVVFGAPAS+AVLERDF+DA  MM SSRS+ D KYV+M+LFLHGN
Sbjct:  518 TFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGN 610          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.850e-33
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   70 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            ELSC+ VL WWKRW SSYPLLARAARVVFGAPAS+AVLE DF DAG +MTSSRS+TD KYV+MILFLHGN
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGN 100          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.620e-32
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            + E++  AEL  LR +  G+L   LSCE VL WWK W  +YPLLAR ARVVFGAPAS+AVLERDFS+AG MMTSSRS+ D KYV+MI+FLHGN
Sbjct:  578 SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGN 670          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.950e-29
Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            + E++  AEL  LR +  G+L   L CE VL WWK W  +YPLLAR ARVV GA AS+AVLE DFS+AG MMTSSRS+ D KYV+MILFLHGN
Sbjct:  351 SFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGN 443          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.280e-28
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            + +++  AEL  LR +  G L   L CE VL WWK W  +YPLLAR ARVVFGAPAS+AVLE  FS+AG M TSSRS+ D  YV+MI+FLHGN
Sbjct:  114 SFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGN 206          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.760e-27
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   10 ESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN 279
            E   AEL+TLR  +   L  + SCEGVL WWKR E SYPLLAR ARVVF APAS  V ERD   AG MMTSSRS+ D KYV+M+LFLHGN
Sbjct:  623 ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGN 712          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.660e-19
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  109 WESSYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTD-VKYVDMILFLHGN 279
            W   YPLLAR ARVVFGAPAS+AVLERDFS+AG MMTSSR + D   YV+MILFLHGN
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGN 59          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.970e-16
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARVVFGAPA 168
            T E    AE +TLRG+ AG+LT +L CEGVL WW++WE SYPLLARAARV FGAPA
Sbjct:  317 TFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA 372          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.430e-15
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  118 SYPLLARAARVVFGAPASSAVLERDFSDAGHMMTSSRSSTDVKY-VDMILFLHGN 279
            +Y LL   ARVVFGAPAS+A LERDFS+AG MMTSSRS+ D KY V+MILFLHGN
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGN 59          
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   70 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLE 186
            ELSCE VL WWKRW SSYPLLARA RVVFGAPAS+A +E
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAAYVE 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80040.15661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LBK4_ECTSI2.170e-3573.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE5.850e-3382.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE6.620e-3266.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE3.950e-2963.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE1.280e-2860.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI2.760e-2765.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE6.660e-1975.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE3.970e-1667.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW12_9PHAE1.430e-1574.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE1.210e-1282.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80040contigH-elongata_contig80040:1260..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog7897.ENSLACP00000018276
EggNOG free text desc.BED zinc finger
EggNOG OGs39UGB@33154,3BN4J@33208,3E6DU@33213,4877C@7711,49996@7742,KOG1121@1,KOG1121@2759
COG Functional cat.KL
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.645286-CDS-H-elongata_contig80040:1259..15381622931206.645286-CDS-H-elongata_contig80040:1259..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80040 1260..1538 -
1691679741.4376206-CDS-H-elongata_contig80040:1259..15381691679741.4376206-CDS-H-elongata_contig80040:1259..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80040 1260..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80040.15661.1prot_H-elongata_contig80040.15661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80040 1260..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80040.15661.1

>prot_H-elongata_contig80040.15661.1 ID=prot_H-elongata_contig80040.15661.1|Name=mRNA_H-elongata_contig80040.15661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
TIEESVHAELKTLRGLAAGTLTVELSCEGVLMWWKRWESSYPLLARAARV
VFGAPASSAVLERDFSDAGHMMTSSRSSTDVKYVDMILFLHGN
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mRNA from alignment at H-elongata_contig80040:1260..1538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80040.15661.1 ID=mRNA_H-elongata_contig80040.15661.1|Name=mRNA_H-elongata_contig80040.15661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig80040:1260..1538- (Himanthalia elongata Himel1 dioecious)
ACGATCGAGGAGAGCGTTCACGCCGAGCTCAAGACGCTGAGGGGTCTGGC GGCTGGCACACTGACGGTCGAGTTGAGTTGCGAGGGTGTGCTCATGTGGT GGAAGAGATGGGAGAGCTCGTACCCACTTCTGGCCCGGGCAGCTCGAGTG GTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATTTTAGCGA TGCTGGGCACATGATGACGTCATCGAGAAGCTCCACTGATGTCAAGTACG TGGACATGATCCTTTTTCTGCACGGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig80040:1260..1538-

>mRNA_H-elongata_contig80040.15661.1 ID=mRNA_H-elongata_contig80040.15661.1|Name=mRNA_H-elongata_contig80040.15661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig80040:1260..1538- (Himanthalia elongata Himel1 dioecious)
ACGATCGAGGAGAGCGTTCACGCCGAGCTCAAGACGCTGAGGGGTCTGGC
GGCTGGCACACTGACGGTCGAGTTGAGTTGCGAGGGTGTGCTCATGTGGT
GGAAGAGATGGGAGAGCTCGTACCCACTTCTGGCCCGGGCAGCTCGAGTG
GTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATTTTAGCGA
TGCTGGGCACATGATGACGTCATCGAGAAGCTCCACTGATGTCAAGTACG
TGGACATGATCCTTTTTCTGCACGGCAACACGATCGAGGAGAGCGTTCAC
GCCGAGCTCAAGACGCTGAGGGGTCTGGCGGCTGGCACACTGACGGTCGA
GTTGAGTTGCGAGGGTGTGCTCATGTGGTGGAAGAGATGGGAGAGCTCGT
ACCCACTTCTGGCCCGGGCAGCTCGAGTGGTGTTCGGAGCTCCAGCGTCG
TCGGCGGTGCTCGAGCGCGATTTTAGCGATGCTGGGCACATGATGACGTC
ATCGAGAAGCTCCACTGATGTCAAGTACGTGGACATGATCCTTTTTCTGC
ACGGCAAC
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