mRNA_H-elongata_contig80016.15660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80016.15660.1
Unique NamemRNA_H-elongata_contig80016.15660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUL2_FUCVE (Ribosomal protein L6 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUL2_FUCVE)

HSP 1 Score: 211 bits (536), Expect = 7.500e-66
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            +YRLP  V+C SNQGKVRISGP GVV F S SK++RKGN+LIFLP LT YYSSIFTQ VLGV LGY+IEL+LKGIGYRV KE G+LI +LGYSH + L IP++I V   KK FSL+S+NYG LQN+  KIRSYR P+ YKG  V+Y NE++  K+ KKN
Sbjct:    5 MYRLPVGVDCLSNQGKVRISGPCGVVVFDSSSKLYRKGNILIFLPELTKYYSSIFTQAVLGVVLGYTIELNLKGIGYRVSKEKGELILHLGYSHSIILEIPKEITVTLDKKIFSLMSANYGLLQNFATKIRSYRLPDSYKGAGVLYNNEIVNRKQGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L2F1G5_9PHAE (Ribosomal protein L6 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1G5_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.290e-65
Identity = 100/159 (62.89%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            VYRLP  VNC SN GKV +SG +G V+F S SKI+RKGN ++FLPYLT YYSSIFTQ VLGV LGY+IEL LKGIGY+V+K   KLIF+LG+SH +S+ IPE + V+  KKTFSL+S+N+G LQN+   IR+YRFP+ YKG  V+Y NE+++ K+ KKN
Sbjct:    5 VYRLPIGVNCLSNNGKVYVSGSFGFVTFDSASKIYRKGNTIVFLPYLTSYYSSIFTQAVLGVVLGYTIELILKGIGYKVYKANDKLIFSLGFSHTISIRIPEGVSVRFNKKTFSLMSANFGLLQNFATSIRAYRFPDTYKGAGVVYMNEIVICKEGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUH0_9PHAE (Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.090e-65
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
            V+RLP  V C+S+ GKVR+SG  G+V F S S +HRKGNM+IFLPYLTPYYSSIFTQ VLGV LGY+IEL LKGIGYRV +E GKLIF+LGYS  + LTIPE I VK  KKTF L S+N+G LQN+   IR +RFP+PYKGG ++Y +E++V K+ KK
Sbjct:    5 VFRLPIGVECTSSSGKVRVSGARGLVIFDSVSNLHRKGNMVIFLPYLTPYYSSIFTQAVLGVILGYTIELKLKGIGYRVREEKGKLIFSLGYSRPIILTIPEAISVKFNKKTFLLRSANFGLLQNFATTIRRFRFPDPYKGGGILYDSEIIVCKEGKK 162          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A068LGK5_9PHAE (Ribosomal protein L6 n=3 Tax=Sargassum TaxID=3015 RepID=A0A068LGK5_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.220e-64
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            VYRLP  VNC SN GKV + GP G+V F   SKIHRKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKG+GY+V+K   KLIF LG+SH +S+ IP+ ++V+  KKT SL+SSN G LQN+   IR+YRFP+ YKG  V+Y NE++  K+ KKN
Sbjct:    5 VYRLPIGVNCLSNNGKVSVLGPRGIVDFDCVSKIHRKGNMIVFLPYLTPYYSSIFTQAVLGVILGYSMELILKGVGYKVYKFNKKLIFALGFSHSISIDIPDGVLVRFNKKTLSLMSSNLGLLQNFTTSIRAYRFPDSYKGAGVVYVNEMVTCKEGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: E6ZEQ4_ECTSI (Ribosomal protein L6 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ4_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 4.940e-64
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
            V+RLP  V CSSN GKV +SG  G V F S S +HRKG+M+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV KE  KLIF+LGYS  V L IP+DI ++  KKTFSLIS+NYGTLQN+   IRSYRFP+ YKG  V+Y +E++V K+ KK
Sbjct:    5 VFRLPIGVKCSSNNGKVYVSGNKGRVVFDSVSNLHRKGDMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVRKEEEKLIFSLGYSKPVILDIPKDISIRFNKKTFSLISANYGTLQNFASSIRSYRFPDSYKGAGVLYADEIIVCKEGKK 162          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L1ZK56_9PHAE (Ribosomal protein L6 n=10 Tax=Sargassaceae TaxID=3014 RepID=A0A1L1ZK56_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 9.920e-64
Identity = 101/159 (63.52%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            VYRLP  VNC SN GKV + GP GVV F   SKI+RKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKGIGY+V+K   KLIF LG+SH VS+ IPE + V+  KKT SL+S+++G LQN+   IR+YRFP+ YKG  V+Y NE++  K+ KKN
Sbjct:    5 VYRLPIGVNCLSNNGKVYVLGPCGVVDFDCVSKIYRKGNMVVFLPYLTPYYSSIFTQAVLGVVLGYSLELVLKGIGYKVYKSNEKLIFTLGFSHSVSIDIPEGVFVRFNKKTLSLMSADFGLLQNFTTGIRAYRFPDCYKGAGVVYINEIVTCKEGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0G2RKW1_TUROR (Ribosomal protein L6 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKW1_TUROR)

HSP 1 Score: 204 bits (520), Expect = 1.990e-63
Identity = 99/159 (62.26%), Postives = 124/159 (77.99%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            +YRLP  V C SN GKV +SGP GVVSF   SKI+RKGNM+IFLPYLT Y SSIFTQ VLGV LGYS+EL LKGIGY+V+K   KLIF+LG+SH + + IP+ ++V+  KKTFSL+S+N+G LQN+   IR YRFP+ YKG  V+Y NE+++ K+ KKN
Sbjct:    5 IYRLPIGVTCLSNNGKVYVSGPCGVVSFDCVSKIYRKGNMIIFLPYLTSYDSSIFTQAVLGVVLGYSVELILKGIGYKVYKSDEKLIFSLGFSHSIFIDIPKGVLVRFNKKTFSLVSANFGLLQNFATSIRRYRFPDSYKGAGVVYANEIVICKEGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0U1WNM4_SARFS (Ribosomal protein L6 n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A0U1WNM4_SARFS)

HSP 1 Score: 201 bits (512), Expect = 3.250e-62
Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
            +YRLP  VNC SN GKV +SGP GVV F   SKI+RKGNM++FLPYL+ YYSSIF Q VLGV LGYS+EL LKGIGY+ +K   KLIF LG+SH +S+ IPE + V+  KKT SLIS+N G LQN+   IR+YRFP+ YKG  ++Y NE++  K+ KKN
Sbjct:    5 IYRLPIGVNCLSNNGKVFVSGPCGVVDFYCVSKIYRKGNMIVFLPYLSSYYSSIFIQAVLGVVLGYSVELVLKGIGYKAYKSDEKLIFTLGFSHSISIDIPEGVFVRLNKKTLSLISANLGLLQNFTTSIRAYRFPDSYKGAGIVYVNEIVTCKEGKKN 163          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A8F0FCE9_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCE9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.250e-62
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
            V+RLP  V+CSSN+GKVR+SG  G+V+F S S ++RKGNM+IFLPYLTPY SSIF Q + GV LGY+IEL LKGIGYRV +E  KLIF+LGYS  V L IP+D+ VK  K+TFSL+S+NYG LQN+   IR YRFP+ YKG  V+Y NE++V K+ KK
Sbjct:    5 VFRLPIGVSCSSNKGKVRVSGCCGMVTFDSISNLYRKGNMVIFLPYLTPYESSIFKQAIYGVVLGYTIELRLKGIGYRVREEDNKLIFSLGYSRPVLLNIPKDVEVKFSKRTFSLMSANYGVLQNFATTIRRYRFPDSYKGAGVLYENEIIVCKEGKK 162          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A3G5FPP9_9PHAE (Ribosomal protein L6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPP9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.250e-62
Identity = 102/158 (64.56%), Postives = 120/158 (75.95%), Query Frame = 3
Query:  282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
            VYRLP  V CSS  GKVR+SG  G V F S S ++RKGNM+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV +E  KLIF+LGYS  V L +P+DI VK  KKTFSL+S+NYG LQN+   IRSYRFP+ YK   V+Y  E+++ K+ KK
Sbjct:    5 VYRLPIGVECSSKNGKVRVSGSNGTVVFNSVSNLYRKGNMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVREEDKKLIFSLGYSKPVILNMPDDISVKFNKKTFSLLSANYGVLQNFATTIRSYRFPDSYKASGVLYIGEIVICKEGKK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUL2_FUCVE7.500e-6666.67Ribosomal protein L6 n=3 Tax=Fucus TaxID=3011 RepI... [more]
A0A1L2F1G5_9PHAE4.290e-6562.89Ribosomal protein L6 n=1 Tax=Coccophora langsdorfi... [more]
Q2TUH0_9PHAE6.090e-6565.19Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=313... [more]
A0A068LGK5_9PHAE1.220e-6462.89Ribosomal protein L6 n=3 Tax=Sargassum TaxID=3015 ... [more]
E6ZEQ4_ECTSI4.940e-6466.46Ribosomal protein L6 n=2 Tax=Ectocarpus siliculosu... [more]
A0A1L1ZK56_9PHAE9.920e-6463.52Ribosomal protein L6 n=10 Tax=Sargassaceae TaxID=3... [more]
A0A0G2RKW1_TUROR1.990e-6362.26Ribosomal protein L6 n=1 Tax=Turbinaria ornata Tax... [more]
A0A0U1WNM4_SARFS3.250e-6261.01Ribosomal protein L6 n=1 Tax=Sargassum fusiforme T... [more]
A0A8F0FCE9_9PHAE3.250e-6263.29Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A3G5FPP9_9PHAE3.250e-6264.56Ribosomal protein L6 n=1 Tax=Cladosiphon okamuranu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80016contigH-elongata_contig80016:2001..2904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue5.4e-18
Seed eggNOG ortholog2880.D7FV76
EggNOG free text desc.Ribosomal protein S8
EggNOG OGs2E4Z8@1,2SBTY@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.2
Exons2
Model size767
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80016.15660.1prot_H-elongata_contig80016.15660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80016 2039..2877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.5610886-UTR-H-elongata_contig80016:2000..20381622931206.5610886-UTR-H-elongata_contig80016:2000..2038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 2001..2038 +
1691679741.3883817-UTR-H-elongata_contig80016:2000..20381691679741.3883817-UTR-H-elongata_contig80016:2000..2038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 2001..2038 +
1622931206.6047068-UTR-H-elongata_contig80016:2877..29041622931206.6047068-UTR-H-elongata_contig80016:2877..2904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 2878..2904 +
1691679741.4253364-UTR-H-elongata_contig80016:2877..29041691679741.4253364-UTR-H-elongata_contig80016:2877..2904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 2878..2904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.5774486-CDS-H-elongata_contig80016:2038..22791622931206.5774486-CDS-H-elongata_contig80016:2038..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 2039..2279 +
1691679741.401342-CDS-H-elongata_contig80016:2038..22791691679741.401342-CDS-H-elongata_contig80016:2038..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 2039..2279 +
1622931206.5924876-CDS-H-elongata_contig80016:2416..28771622931206.5924876-CDS-H-elongata_contig80016:2416..2877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 2417..2877 +
1691679741.4123795-CDS-H-elongata_contig80016:2416..28771691679741.4123795-CDS-H-elongata_contig80016:2416..2877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 2417..2877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80016.15660.1

>prot_H-elongata_contig80016.15660.1 ID=prot_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MLPKIFNKLRNGLVVYNLSITFKEVSFSTRVLDLLWRENLIRGYRKKDDG
LITVLLRYYEGFPVCTRLIVISRPRHRLYVYVYRLPTEVNCSSNQGKVRI
SGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIE
LSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSN
YGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*
back to top

mRNA from alignment at H-elongata_contig80016:2001..2904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80016.15660.1 ID=mRNA_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=904bp|location=Sequence derived from alignment at H-elongata_contig80016:2001..2904+ (Himanthalia elongata Himel1 dioecious)
TTAGGTCGTTGGTTCAATTCCAATCTCAAACAGAATTAATGCTTCCCAAA ATATTTAATAAATTACGTAATGGTTTGGTAGTGTATAATCTTTCAATTAC GTTTAAAGAGGTAAGTTTTTCTACAAGGGTTTTAGATCTTTTATGGAGGG AAAATTTAATTCGAGGTTACAGGAAAAAAGATGATGGTTTAATTACAGTA CTTCTTCGGTATTATGAGGGGTTTCCGGTGTGTACTCGTTTAATTGTAAT ATCTCGACCACGTCATCGTCTTTATGTTTCTTCATTAGATCTTTATCGAT TTCCTAAAGAATTTGGTGTTTTGGTAATATCTACCGGAAAAGGTATTATG ACGTCAGAAGATGCAGTACGTAAAGGAGAAGGTGGTGAAATTTTAGCCTA CGTTTCATGAATATTCATGTTTATAGATTACCTACAGAGGTTAATTGTTC AAGTAATCAGGGTAAAGTTCGTATTTCCGGTCCTTATGGTGTTGTTAGTT TTAAATCAGATAGTAAGATACACCGCAAAGGTAATATGTTGATTTTTTTA CCTTATTTGACACCTTATTATAGTTCGATATTTACTCAAGGTGTTTTAGG TGTTTTTTTAGGGTACAGTATAGAATTAAGCCTTAAAGGAATAGGGTATA GGGTACATAAAGAATATGGAAAACTCATTTTTAATTTAGGTTACAGTCAC CTTGTTAGTCTTACTATCCCAGAGGATATCGTGGTTAAAAAAAAAAAAAA AACGTTTTCTTTAATTTCTTCAAATTACGGAACTTTACAAAATTATGAAA AAAAAATACGTAGTTATCGATTTCCTAATCCTTATAAAGGGGGGGACGTT ATATATACTAATGAAGTACTAGTATGAAAAAAAAAAAAAAAAAATTAATG CTTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig80016:2001..2904+

>mRNA_H-elongata_contig80016.15660.1 ID=mRNA_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig80016:2001..2904+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCAAAATATTTAATAAATTACGTAATGGTTTGGTAGTGTATAA
TCTTTCAATTACGTTTAAAGAGGTAAGTTTTTCTACAAGGGTTTTAGATC
TTTTATGGAGGGAAAATTTAATTCGAGGTTACAGGAAAAAAGATGATGGT
TTAATTACAGTACTTCTTCGGTATTATGAGGGGTTTCCGGTGTGTACTCG
TTTAATTGTAATATCTCGACCACGTCATCGTCTTTATGTTTATGCTTCCC
AAAATATTTAATAAATTACGTAATGGTTTGGTAGTGTATAATCTTTCAAT
TACGTTTAAAGAGGTAAGTTTTTCTACAAGGGTTTTAGATCTTTTATGGA
GGGAAAATTTAATTCGAGGTTACAGGAAAAAAGATGATGGTTTAATTACA
GTACTTCTTCGGTATTATGAGGGGTTTCCGGTGTGTACTCGTTTAATTGT
AATATCTCGACCACGTCATCGTCTTTATGTTTATGTTTATAGATTACCTA
CAGAGGTTAATTGTTCAAGTAATCAGGGTAAAGTTCGTATTTCCGGTCCT
TATGGTGTTGTTAGTTTTAAATCAGATAGTAAGATACACCGCAAAGGTAA
TATGTTGATTTTTTTACCTTATTTGACACCTTATTATAGTTCGATATTTA
CTCAAGGTGTTTTAGGTGTTTTTTTAGGGTACAGTATAGAATTAAGCCTT
AAAGGAATAGGGTATAGGGTACATAAAGAATATGGAAAACTCATTTTTAA
TTTAGGTTACAGTCACCTTGTTAGTCTTACTATCCCAGAGGATATCGTGG
TTAAAAAAAAAAAAAAAACGTTTTCTTTAATTTCTTCAAATTACGGAACT
TTACAAAATTATGAAAAAAAAATACGTAGTTATCGATTTCCTAATCCTTA
TAAAGGGGGGGACGTTATATATACTAATGAAGTACTAGTATGAATGTTTA
TAGATTACCTACAGAGGTTAATTGTTCAAGTAATCAGGGTAAAGTTCGTA
TTTCCGGTCCTTATGGTGTTGTTAGTTTTAAATCAGATAGTAAGATACAC
CGCAAAGGTAATATGTTGATTTTTTTACCTTATTTGACACCTTATTATAG
TTCGATATTTACTCAAGGTGTTTTAGGTGTTTTTTTAGGGTACAGTATAG
AATTAAGCCTTAAAGGAATAGGGTATAGGGTACATAAAGAATATGGAAAA
CTCATTTTTAATTTAGGTTACAGTCACCTTGTTAGTCTTACTATCCCAGA
GGATATCGTGGTTAAAAAAAAAAAAAAAACGTTTTCTTTAATTTCTTCAA
ATTACGGAACTTTACAAAATTATGAAAAAAAAATACGTAGTTATCGATTT
CCTAATCCTTATAAAGGGGGGGACGTTATATATACTAATGAAGTACTAGT
ATGA
back to top