mRNA_H-elongata_contig79991.15653.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79991.15653.1
Unique NamemRNA_H-elongata_contig79991.15653.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79991.15653.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.230e-69
Identity = 122/293 (41.64%), Postives = 161/293 (54.95%), Query Frame = 1 
Query:    1 ALAEARSHNLRVTTCNDIHSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSYFDIPLGYEPTTMVVLLSGGDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDRWRFFNLRGKDGFMNEIAVKQCKENTAS----------------------TAIASLCSESMCSDDVGDVAKFNLTL--------------GRPGNDG-WIKKRVKTTFNPVAMKLRGTGN-PWCANDIAFNDFRLVDHSSLP--VVLSDEKEQFFYSVQMFGEL 756
            A A  +   L V TCN+ ++G+ + ++L FC G  + C  G  N YN   EL   GTW+ F+IPL +EPT M + + G DAWC +EVIWN  T+LLG G R+YLDGD G +GCNYGVH  TG FYPC+  WRFFNL+G D +  EI VK C   T+S                        +ASLCSES C + VG+V    L                 R G+ G W   R   TFNPVAM+L   G+ PWCA ++AFN++ LV+  + P  + L    ++ F++VQ  G L
Sbjct:  127 ATAAIQPFTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWFYPCQSSWRFFNLQGSDDYEYEIKVKPCGSATSSGXXXXXXXXXXXXXXXXXXXSSRILASLCSESECDETVGEVVNVTLAAEPSHRHGXXXXXXTSRAGSGGDWATTRTPATFNPVAMRLTNVGDFPWCAEEVAFNEYTLVNRFASPHGMKLGVGDDRLFFNVQSLGLL 419
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BLAST of mRNA_H-elongata_contig79991.15653.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 6.390e-66
Identity = 124/293 (42.32%), Postives = 162/293 (55.29%), Query Frame = 1 
Query:    1 ALAEARSHNLRVTTCNDIHSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSYFDIPLGYEPTTMVVLLSGGDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDRWRFFNLRGKDGFMNEIAVKQC---------------------KENTASTAI-ASLCSESMCSDDVGDVAKFNLTLGRPGNDG---------------WIKKRVKTTFNPVAMKLRGTGN-PWCANDIAFNDFRLVDHSSLP--VVLSDEKEQFFYSVQMFGEL 756
            A A  + + L V T N  ++G+ + ++L FC G  + C  G  N YN   EL   GT + F+IPL YEPT M + + G DAWC +E IWN  T+LLG GAR+YLDGD G +GCNYGVH  TG FYPC+ RWRFFNL G D +  EI VK C                     +E++AST I ASLCSES C +  G+V   N+TL      G               W   R   TFNPVAM+L   G+ PWCA ++AFN++ LV+  + P  + L    ++ F++VQ  G L
Sbjct:   43 ATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWFYPCQSRWRFFNLPGSDDYEYEIKVKPCDSATPSGSASLSQQEEEAAAVRESSASTKILASLCSESECDETAGEVV--NVTLAAEPAQGXXXXXXXXXXXXXXDWATTRTPATFNPVAMRLTNVGDLPWCAEEVAFNEYTLVNRYASPHGMKLDVGDDRLFFNVQSLGLL 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79991.15653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K899_9PHAE1.230e-6941.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J9_ECTSI6.390e-6642.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79991contigH-elongata_contig79991:889..2693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79991.15653.1prot_H-elongata_contig79991.15653.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79991 889..2693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931205.385556-CDS-H-elongata_contig79991:888..11301622931205.385556-CDS-H-elongata_contig79991:888..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 889..1130 +
1691679740.9495-CDS-H-elongata_contig79991:888..11301691679740.9495-CDS-H-elongata_contig79991:888..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 889..1130 +
1622931205.3998873-CDS-H-elongata_contig79991:1561..17341622931205.3998873-CDS-H-elongata_contig79991:1561..1734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 1562..1734 +
1691679740.9599507-CDS-H-elongata_contig79991:1561..17341691679740.9599507-CDS-H-elongata_contig79991:1561..1734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 1562..1734 +
1622931205.413689-CDS-H-elongata_contig79991:2028..22511622931205.413689-CDS-H-elongata_contig79991:2028..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 2029..2251 +
1691679740.970386-CDS-H-elongata_contig79991:2028..22511691679740.970386-CDS-H-elongata_contig79991:2028..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 2029..2251 +
1622931205.4262698-CDS-H-elongata_contig79991:2566..26931622931205.4262698-CDS-H-elongata_contig79991:2566..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 2567..2693 +
1691679740.980483-CDS-H-elongata_contig79991:2566..26931691679740.980483-CDS-H-elongata_contig79991:2566..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79991 2567..2693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79991.15653.1

>prot_H-elongata_contig79991.15653.1 ID=prot_H-elongata_contig79991.15653.1|Name=mRNA_H-elongata_contig79991.15653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
ALAEARSHNLRVTTCNDIHSGTENTIYLKFCQGMSNCTTGESNAYNLDGE
LKHPGTWSYFDIPLGYEPTTMVVLLSGGDAWCIEEVIWNNSTSLLGRGAR
IYLDGDKGFRGCNYGVHHQTGRFYPCRDRWRFFNLRGKDGFMNEIAVKQC
KENTASTAIASLCSESMCSDDVGDVAKFNLTLGRPGNDGWIKKRVKTTFN
PVAMKLRGTGNPWCANDIAFNDFRLVDHSSLPVVLSDEKEQFFYSVQMFG
ELPR*
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mRNA from alignment at H-elongata_contig79991:889..2693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79991.15653.1 ID=mRNA_H-elongata_contig79991.15653.1|Name=mRNA_H-elongata_contig79991.15653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1805bp|location=Sequence derived from alignment at H-elongata_contig79991:889..2693+ (Himanthalia elongata Himel1 dioecious)
GCCCTGGCAGAAGCTCGAAGTCACAATCTGAGAGTCACGACCTGCAACGA
TATTCACTCTGGGACAGAGAACACGATCTACTTGAAGTTCTGCCAGGGAA
TGAGCAATTGTACCACGGGCGAATCGAACGCGTACAATCTGGATGGTGAG
CTGAAGCACCCGGGAACTTGGAGTTACTTCGACATCCCTTTGGGTTACGA
GCCCACGACAATGGTGGTCTTGCTCTCGGGTGGTGACGCTTGGTGAGGTC
TGATGTGCGGTAGATGCGCCCCCTTAAGGCTGACTGCACCTTTAAGGATA
CGTAGACGCCACGCAAGTTGTTTTTTATGGTTTACTACGCTTTCGTTAGA
CGAAAGAACGGCGAGGGCCGACATGGTCCCGTCCACCCAATAAATGAAGA
CCAACCACTACCCCAAAACCGGTCAGCGCAATGCCCACGATAGTAGCAAT
TCGACAGTTCTTTCGCAGGCTAACGAATCAAAACCAGAGCTCATCTCATT
TGTACCAGGCCCTGTTTTGTTTGTGAAGCACCAAGCAACACCGCCTTCGT
CGCGGTCGACTGCTCTCGACTATGCTAAGGGGGTGATCAATCGTCTCTCG
ACACGTTATATACCACCAAGGACCGAAGAATCAGTTCTGCGGTTTCCCCT
CGCGTGTCGCAACCCCTCGATAGGTGCATAGAAGAAGTAATCTGGAATAA
TTCGACCAGTCTTCTCGGGCGAGGTGCCAGAATATACCTTGACGGTGATA
AGGGCTTCCGAGGCTGCAACTATGGCGTTCACCACCAGACAGGCCGGTTC
TATCCCTGCCGCGATCGTTGGCGGTTCTTCAACCTGCGGGGGAAAGGTGC
ACAGCCAAACACAACGATATATCATCATTAGGGGTTCTTGGAGGACCGGG
TTAGGCGTCCCGCAAGTGAAATGTACCGCGGGTGAACTCGCCCGTCGCTG
TCTCACTGTCGGCTTAAGAACATCACAGAAAGGTGGAAATATACCCTAAA
ATGTAGTACCAAGTGCAGTATATCGTAGGGGCTCCCAACAGATCCGATGT
GGTTGGGTTTGCCTTCCTTCGACGAAGATTTTTCTGTTGGGGCCGTGACG
TTATAAATGATTGACAACTTTGTGACTGTCTTCGTCGCAGACGGTTTTAT
GAACGAAATTGCCGTGAAGCAATGTAAGGAGAACACGGCTTCGACCGCGA
TCGCCTCTTTATGTTCCGAGTCCATGTGCTCGGATGATGTCGGGGACGTG
GCGAAGTTCAATTTGACGTTGGGCAGACCAGGAAATGATGGATGGATCAA
GAAGCGAGTCAAAACGACCTTCAACCCTGTGGCCATGAAGCTGAGAGGCA
CGGGTAATCCCTGGTGAGAGGGTGTAAAGGCGTTGGTACCAAGGTATATA
TATATTTCGCAGCCTGGCTACCGTTAACGACTTTTGATGGTTGCTTCCTG
ACAGCTCGCGCGGACCTTTACTTTACGTGTTGCATGCGAGAGCGGCACCT
CTTGACCGGAAACGTACATCTCCGTGCGGGAGTTGCAGAGCACGCCCACC
ATCAGGAGAAATCGCACCCATATATGCTCGTCTACCTCAACTTCAGACTG
ACAATAACAGTGGTGCTCTGTTTGAGGACCTCGATTACCACGACCTTAAG
CTCTGTGCTCCGTTCTGGAATAACGCAGGTGTGCCAATGATATTGCTTTC
AATGACTTCAGGCTAGTCGACCATAGTTCCCTGCCAGTTGTTCTATCCGA
CGAAAAGGAGCAATTCTTTTACAGCGTCCAGATGTTCGGTGAGTTGCCAC
GATAA
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Coding sequence (CDS) from alignment at H-elongata_contig79991:889..2693+

>mRNA_H-elongata_contig79991.15653.1 ID=mRNA_H-elongata_contig79991.15653.1|Name=mRNA_H-elongata_contig79991.15653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig79991:889..2693+ (Himanthalia elongata Himel1 dioecious)
GCCCTGGCAGAAGCTCGAAGTCACAATCTGAGAGTCACGACCTGCAACGA
TATTCACTCTGGGACAGAGAACACGATCTACTTGAAGTTCTGCCAGGGAA
TGAGCAATTGTACCACGGGCGAATCGAACGCGTACAATCTGGATGGTGAG
CTGAAGCACCCGGGAACTTGGAGTTACTTCGACATCCCTTTGGGTTACGA
GCCCACGACAATGGTGGTCTTGCTCTCGGGTGGTGACGCTTGGCCCTGGC
AGAAGCTCGAAGTCACAATCTGAGAGTCACGACCTGCAACGATATTCACT
CTGGGACAGAGAACACGATCTACTTGAAGTTCTGCCAGGGAATGAGCAAT
TGTACCACGGGCGAATCGAACGCGTACAATCTGGATGGTGAGCTGAAGCA
CCCGGGAACTTGGAGTTACTTCGACATCCCTTTGGGTTACGAGCCCACGA
CAATGGTGGTCTTGCTCTCGGGTGGTGACGCTTGGTGCATAGAAGAAGTA
ATCTGGAATAATTCGACCAGTCTTCTCGGGCGAGGTGCCAGAATATACCT
TGACGGTGATAAGGGCTTCCGAGGCTGCAACTATGGCGTTCACCACCAGA
CAGGCCGGTTCTATCCCTGCCGCGATCGTTGGCGGTTCTTCAACCTGCGG
GGGAAAGGTGCATAGAAGAAGTAATCTGGAATAATTCGACCAGTCTTCTC
GGGCGAGGTGCCAGAATATACCTTGACGGTGATAAGGGCTTCCGAGGCTG
CAACTATGGCGTTCACCACCAGACAGGCCGGTTCTATCCCTGCCGCGATC
GTTGGCGGTTCTTCAACCTGCGGGGGAAAGACGGTTTTATGAACGAAATT
GCCGTGAAGCAATGTAAGGAGAACACGGCTTCGACCGCGATCGCCTCTTT
ATGTTCCGAGTCCATGTGCTCGGATGATGTCGGGGACGTGGCGAAGTTCA
ATTTGACGTTGGGCAGACCAGGAAATGATGGATGGATCAAGAAGCGAGTC
AAAACGACCTTCAACCCTGTGGCCATGAAGCTGAGAGGCACGGGTAATCC
CTGACGGTTTTATGAACGAAATTGCCGTGAAGCAATGTAAGGAGAACACG
GCTTCGACCGCGATCGCCTCTTTATGTTCCGAGTCCATGTGCTCGGATGA
TGTCGGGGACGTGGCGAAGTTCAATTTGACGTTGGGCAGACCAGGAAATG
ATGGATGGATCAAGAAGCGAGTCAAAACGACCTTCAACCCTGTGGCCATG
AAGCTGAGAGGCACGGGTAATCCCTGGTGTGCCAATGATATTGCTTTCAA
TGACTTCAGGCTAGTCGACCATAGTTCCCTGCCAGTTGTTCTATCCGACG
AAAAGGAGCAATTCTTTTACAGCGTCCAGATGTTCGGTGAGTTGCCACGA
TAAGTGTGCCAATGATATTGCTTTCAATGACTTCAGGCTAGTCGACCATA
GTTCCCTGCCAGTTGTTCTATCCGACGAAAAGGAGCAATTCTTTTACAGC
GTCCAGATGTTCGGTGAGTTGCCACGATAA
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