mRNA_H-elongata_contig79990.15652.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.670e-41 Identity = 95/233 (40.77%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++TA+ A +L T+NVRT++ G + GH ++ A +CD I +QETRR G+ I GYV+ SG G + K G+ GVG+A++E++ ++G G E IS RL+KVR+ TF+VGYAPTET K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL AA+++LS++ T+F TPK
Sbjct: 77 VKATAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK 305
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.770e-41 Identity = 93/233 (39.91%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T+NVRT++ G + GH ++ + CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL A++++LS+ T+F TPK
Sbjct: 162 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK 390
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.030e-40 Identity = 92/233 (39.48%), Postives = 137/233 (58.80%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T+NVRT++ G + GH ++ + CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL A++++LS+ T+ TPK
Sbjct: 73 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK 301
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 149 bits (377), Expect = 6.610e-40 Identity = 90/232 (38.79%), Postives = 135/232 (58.19%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTP 681
V++ A+ A +L T+NVRT++ G + GH ++ + CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+A++E++ ++G +G E I RL+KVR+ TF+V YAPTET T K FW L +++ EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL A+ ++LS+ T+F TP
Sbjct: 135 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDG--CCDAKIMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFRTP 362
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 151 bits (382), Expect = 9.510e-40 Identity = 90/233 (38.63%), Postives = 135/233 (57.94%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T+NVRT++ G + GH ++ + CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+ ++E++ ++G +G E I RL+KVR+ F+VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL A++++LS+ T+F TPK
Sbjct: 68 VKAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK 296
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.570e-38 Identity = 81/195 (41.54%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 118 LLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
++ A +CD I +QETRR G+ I GYV+ SG G + K G+ GVG+A++E++ ++G G E IS RL+KVR+ TF+VGYAPTET K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL AA+++LS++ T+ TPK
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK 193
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.760e-38 Identity = 91/233 (39.06%), Postives = 136/233 (58.37%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T+NVRT++ G + GH ++ + CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+A++E++ ++G +G E IS RL+KVR+ H +VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG R L A++++LS+ T+F TPK
Sbjct: 120 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERRLGLASDNQLSLTNTYFRTPK 348
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 150 bits (380), Expect = 2.800e-38 Identity = 89/233 (38.20%), Postives = 136/233 (58.37%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T+NVRT++ G + GH ++ + CD + + ETRR G+ +I GYV+ SG G + K G+ G+G+A++E + ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N++G RLL A++++LS+ T+F TPK
Sbjct: 24 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHD--GYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCNAKIMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFRTPK 252
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 144 bits (362), Expect = 8.150e-38 Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 1
Query: 145 CDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
CD I +QETRR G+ +I GYV+ SG G + K G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + +HL+ +MDANARTG R GG +VLG YGRD +N+NG RL A++++ S+ T+F TPK
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGG--CCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK 193
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.590e-37 Identity = 91/233 (39.06%), Postives = 135/233 (57.94%), Query Frame = 1
Query: 7 VRSTARAAAHSKELVVATWNVRTMSEKGTSRPGH-AEDLLMFAAKYECDFIVIQETRRGGRTTIQAPAAGYVVHCSGHCDGDRSKSGILGVGLAVRESIARALGPDGIVPEHISARLLKVRVIFKHRAATTFIVGYAPTETEATCH------KSKFWKELRSIVAEVPASNHLIFMMDANARTGGRGGGGGLGGVRVLGPYGRDTLNDNGSRLLACAAEHKLSIVTTFFSTPK 684
V++ A+ A +L T++VRT+ G + GH ++ ++ CD I +QETRR G+ +I GYV+ SG G + K G GVG+A++E++ +G +G E IS RL+KVR+ TF+VGYAPTET K FW L + + EV + +HL+ +MDANARTG R G +++G YGRD +N+NG RLL A++++LS+ T+F TPK
Sbjct: 142 VKAAAKKKAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK 370 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79990.15652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79990.15652.1 >prot_H-elongata_contig79990.15652.1 ID=prot_H-elongata_contig79990.15652.1|Name=mRNA_H-elongata_contig79990.15652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp RLVRSTARAAAHSKELVVATWNVRTMSEKGTSRPGHAEDLLMFAAKYECDback to top mRNA from alignment at H-elongata_contig79990:2208..2894+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79990.15652.1 ID=mRNA_H-elongata_contig79990.15652.1|Name=mRNA_H-elongata_contig79990.15652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig79990:2208..2894+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79990:2208..2894+ >mRNA_H-elongata_contig79990.15652.1 ID=mRNA_H-elongata_contig79990.15652.1|Name=mRNA_H-elongata_contig79990.15652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig79990:2208..2894+ (Himanthalia elongata Himel1 dioecious)back to top |