mRNA_H-elongata_contig7998.15649.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7998.15649.1
Unique NamemRNA_H-elongata_contig7998.15649.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7998.15649.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.250e-24
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 KVQRAFFAKDPAGMATHVCTRDYFNKVWKGYFPKLKLKRNGDFMLCEICTLLKEKNHGQAGSRGIQNQAERAKDMQFYGDHVE 252
            K  R  + +DPA +A  +C+++YFN+VW  +F  LKLK NGDFMLCEICTLLKEK HGQAGSRG+ ++AER +    Y +H++
Sbjct:  291 KNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQ 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7998.15649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE1.250e-2455.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7998contigH-elongata_contig7998:1737..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7998.15649.1prot_H-elongata_contig7998.15649.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7998 1897..2237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.9576156-UTR-H-elongata_contig7998:1736..18961622931204.9576156-UTR-H-elongata_contig7998:1736..1896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 1737..1896 -
1691679740.7740629-UTR-H-elongata_contig7998:1736..18961691679740.7740629-UTR-H-elongata_contig7998:1736..1896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 1737..1896 -
1622931205.0064795-UTR-H-elongata_contig7998:2237..22791622931205.0064795-UTR-H-elongata_contig7998:2237..2279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 2238..2279 -
1691679740.8189483-UTR-H-elongata_contig7998:2237..22791691679740.8189483-UTR-H-elongata_contig7998:2237..2279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 2238..2279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.9740837-CDS-H-elongata_contig7998:1896..19021622931204.9740837-CDS-H-elongata_contig7998:1896..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 1897..1902 -
1691679740.7870026-CDS-H-elongata_contig7998:1896..19021691679740.7870026-CDS-H-elongata_contig7998:1896..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 1897..1902 -
1622931204.9912148-CDS-H-elongata_contig7998:2027..22371622931204.9912148-CDS-H-elongata_contig7998:2027..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 2028..2237 -
1691679740.8074195-CDS-H-elongata_contig7998:2027..22371691679740.8074195-CDS-H-elongata_contig7998:2027..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 2028..2237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7998.15649.1

>prot_H-elongata_contig7998.15649.1 ID=prot_H-elongata_contig7998.15649.1|Name=mRNA_H-elongata_contig7998.15649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MATHVCTRDYFNKVWKGYFPKLKLKRNGDFMLCEICTLLKEKNHGQAGSR
GIQNQAERAKDMQFYGDHVET*
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mRNA from alignment at H-elongata_contig7998:1737..2279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7998.15649.1 ID=mRNA_H-elongata_contig7998.15649.1|Name=mRNA_H-elongata_contig7998.15649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig7998:1737..2279- (Himanthalia elongata Himel1 dioecious)
CTCAAGGTCCAACGCGCTTTCTTTGCCAAAGACCCAGCCGGCATGGCCAC
TCATGTCTGCACGCGCGACTACTTCAACAAGGTGTGGAAGGGCTACTTTC
CGAAGCTGAAGTTGAAACGAAACGGAGACTTCATGCTCTGTGAGATCTGC
ACCCTGCTGAAGGAAAAAAATCACGGTCAGGCAGGTTCGAGGGGCATTCA
GAACCAAGCGGAGAGGGCCAAGGACATGCAGTTCTACGGCGACCACGTGG
AGGTAGGATGAACACCGAAATTTGTGTTTTGTTTCGTGGCATACAACAAT
CATCTCAGGTTTGAAATCATCGCTACGAAATGCTGCAAAAAAAATAACAT
CGTAATTCATCGTATTCGTTTGGCAAGACGTGAGCCAAGATCGTCTTTAC
AGCGGGAAAATTGAATTTGGCGCAGAGATTGCCAAGAGAAACGGCACACC
ATGGGAAAGTGTATACATGATGGTTGATGCTGCCAACCAGAACAACTTCG
CCACCCCTCTGGGTGCTTCCAACGCTCATGGAGTAGATGACAG
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Coding sequence (CDS) from alignment at H-elongata_contig7998:1737..2279-

>mRNA_H-elongata_contig7998.15649.1 ID=mRNA_H-elongata_contig7998.15649.1|Name=mRNA_H-elongata_contig7998.15649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig7998:1737..2279- (Himanthalia elongata Himel1 dioecious)
ATGGCCACTCATGTCTGCACGCGCGACTACTTCAACAAGGTGTGGAAGGG
CTACTTTCCGAAGCTGAAGTTGAAACGAAACGGAGACTTCATGCTCTGTG
AGATCTGCACCCTGCTGAAGGAAAAAAATCACGGTCAGGCAGGTTCGAGG
GGCATTCAGAACCAAGCGGAGAGGGCCAAGGACATGCAGTTCTACGGCGA
CCACGTGGAGATGGCCACTCATGTCTGCACGCGCGACTACTTCAACAAGG
TGTGGAAGGGCTACTTTCCGAAGCTGAAGTTGAAACGAAACGGAGACTTC
ATGCTCTGTGAGATCTGCACCCTGCTGAAGGAAAAAAATCACGGTCAGGC
AGGTTCGAGGGGCATTCAGAACCAAGCGGAGAGGGCCAAGGACATGCAGT
TCTACGGCGACCACGTGGAGACGTGAACGTGA
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