mRNA_H-elongata_contig79962.15646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79962.15646.1
Unique NamemRNA_H-elongata_contig79962.15646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79962.15646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79962contigH-elongata_contig79962:1902..2905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79962.15646.1prot_H-elongata_contig79962.15646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79962 1902..2815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.6807694-CDS-H-elongata_contig79962:1901..20041622931204.6807694-CDS-H-elongata_contig79962:1901..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79962 1902..2004 -
1691679740.646279-CDS-H-elongata_contig79962:1901..20041691679740.646279-CDS-H-elongata_contig79962:1901..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79962 1902..2004 -
1622931204.6993678-CDS-H-elongata_contig79962:2732..28151622931204.6993678-CDS-H-elongata_contig79962:2732..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79962 2733..2815 -
1691679740.6551511-CDS-H-elongata_contig79962:2732..28151691679740.6551511-CDS-H-elongata_contig79962:2732..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79962 2733..2815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.7178655-UTR-H-elongata_contig79962:2815..29051622931204.7178655-UTR-H-elongata_contig79962:2815..2905Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79962 2816..2905 -
1691679740.6683712-UTR-H-elongata_contig79962:2815..29051691679740.6683712-UTR-H-elongata_contig79962:2815..2905Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79962 2816..2905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79962.15646.1

>prot_H-elongata_contig79962.15646.1 ID=prot_H-elongata_contig79962.15646.1|Name=mRNA_H-elongata_contig79962.15646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MGSSIKTLAWSPCPEDYEQPFWQPRSTSDGVETHRAILVHLLGHHRRAGL
EAVVSDRPGEP*
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mRNA from alignment at H-elongata_contig79962:1902..2905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79962.15646.1 ID=mRNA_H-elongata_contig79962.15646.1|Name=mRNA_H-elongata_contig79962.15646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1004bp|location=Sequence derived from alignment at H-elongata_contig79962:1902..2905- (Himanthalia elongata Himel1 dioecious)
CGTTTCATTTTTACTAACATCTTGCATTCGACCGCCAAACTGGCGTGACA
CGTAAGGGGGCGCCGCATCGGTTTGCAAATACCCCCCTATATGGGGAGCT
CCATTAAGACATTGGCTTGGTCTCCTTGCCCAGAAGACTACGAACAACCG
TTTTGGCAACCACGTAGTACCAGGTATTGGGTATCATAGTTCGAGCTAGA
TTGGTTTAATTTTGTGTAAACACCTGGGCAAATATTGTATTTTTGGTCCA
ACCCTCCGAACATCCACACCTTCTTAGCGCCGTGAGAGGTGCAGTCCAGG
GGACCAACTATCGTCAGGTTCGAATATGTACATTACTACCTTTGAGCACA
AAATCGTCACACGACATGTGATTAATCGTGTTCCCCGATAGTGAGGCTCG
ATCGGTTAATATCGAGAACACAAACACCGACACTTAACCCTCTTAGTTAT
TCGACCCGTGAGCTTTCAGAAACTCCACGGGTTTCTTTTCTTTTCATTTT
TAATCTTGTATTAGGCAGCGCTACTGTATATGTTCACAGGAGGCGATGAG
AAGCAAATATTTGTATACGACTAGCCTATGAATTGAAGCCATTGTTAAAT
GGAGTTGGTCAATGGGACCCACCAGCCCTGGCCGGCTGCATGGACGGGCT
TGTTCATTGCCTAGCAGAAAAGGCGGGGACGAAGACATTCGACGCAGGGT
CATTTCCCCTAACTTTACAGCCTTTCATATATGGAAATCCCGTGGCGGCA
GGCCACCTTTCTTTGCTTTTCCCACAACTTGTACCTATCAGACCTTTAAC
CAAATTAAAACCTGTGCCCCAACCTGTACCCCACGTGGAGCACACTATTT
CGTTCCTTCACATCTGCTTCACCCGTTTATACATGGGACGAGTCACGGTA
GCGACGGCGTTGAGACCCACCGCGCCATCCTCGTTCATCTTCTCGGACAC
CACCGACGAGCCGGGCTAGAAGCAGTTGTGTCCGATCGACCTGGCGAGCC
ATAA
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Coding sequence (CDS) from alignment at H-elongata_contig79962:1902..2905-

>mRNA_H-elongata_contig79962.15646.1 ID=mRNA_H-elongata_contig79962.15646.1|Name=mRNA_H-elongata_contig79962.15646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig79962:1902..2905- (Himanthalia elongata Himel1 dioecious)
ATGGGGAGCTCCATTAAGACATTGGCTTGGTCTCCTTGCCCAGAAGACTA
CGAACAACCGTTTTGGCAACCACGTAGTACCAGATGGGGAGCTCCATTAA
GACATTGGCTTGGTCTCCTTGCCCAGAAGACTACGAACAACCGTTTTGGC
AACCACGTAGTACCAGCGACGGCGTTGAGACCCACCGCGCCATCCTCGTT
CATCTTCTCGGACACCACCGACGAGCCGGGCTAGAAGCAGTTGTGTCCGA
TCGACCTGGCGAGCCATAACGACGGCGTTGAGACCCACCGCGCCATCCTC
GTTCATCTTCTCGGACACCACCGACGAGCCGGGCTAGAAGCAGTTGTGTC
CGATCGACCTGGCGAGCCATAA
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