mRNA_H-elongata_contig7982.15634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7982.15634.1
Unique NamemRNA_H-elongata_contig7982.15634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: D7G355_ECTSI (TFIIS central domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G355_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 3.060e-88
Identity = 152/212 (71.70%), Postives = 173/212 (81.60%), Query Frame = 1 
Query:  445 GKRKKRVPSPPVWPPGGLKEGEGLPLDDLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRFVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            GK   R  +   WPPGGL EGEGL ++D PDEI+EKVA F  +PRCVSKR +  RVK+VR+RV  ALE+SA LP   A+++E AIFAL G  V KAYKAKARE+SFNLR GKNDPLRE + SG+LL   LVRMSS++LAPLSVR ERER ARKRIREVTSSRDSP HTVT+RF C ECGHE+TQYRTWRRKAVVDR+RVI+QCLQCRHSWEL
Sbjct:  226 GKGSVRGATQGAWPPGGLGEGEGLRINDFPDEIVEKVAGFASLPRCVSKRIEEYRVKVVRERVFTALETSATLPASKAKEVEDAIFALCGGSVTKAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLVRMSSNDLAPLSVRRERERFARKRIREVTSSRDSPFHTVTDRFACVECGHEKTQYRTWRRKAVVDRVRVIVQCLQCRHSWEL 437
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A6H5KU52_9PHAE (TFIIS central domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU52_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.460e-50
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 1 
Query:  445 GKRKKRVPSPPVWPPGGLKEGEGLPLDDLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRFVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREV 918
            GK   R  +   WPPGGL EGEGL ++D PDEI+EKVA F  +PRCVSKR ++ RVK+VR+RV  ALE+SA LP   A+++E AIFAL G  V KAYKAKARE+SFNLR GKNDPLRE + SG+LL   LVRMSS++LAPLSVR ERER ARKRIREV
Sbjct:  270 GKGSVRGATLGAWPPGGLGEGEGLRVNDFPDEIVEKVAGFASLPRCVSKRIEKYRVKVVRERVFTALETSATLPASKAKEVEDAIFALCGGSVTKAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLVRMSSNDLAPLSVRRERERFARKRIREV 427
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A8K1FLZ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLZ7_PYTOL)

HSP 1 Score: 123 bits (309), Expect = 1.620e-27
Identity = 79/195 (40.51%), Postives = 114/195 (58.46%), Query Frame = 1 
Query:  523 DDLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESS----AKLPTDTAEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNH---TVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            ++LP E+L ++ +F  + R VSK +      I R++ +A L  +        T  A++IE A+F   G+     K+Y  KAR+L FNL+  +N  LRE +FSG L +  LVRMS+  +A   +  +RE+  +KR  EVT  RD+  H   T ++ F C  CG  RT YR WRRKA+VDR+RVI+ CL C + WEL
Sbjct:   86 NELPQEVLVQICSFTPVGR-VSKAWSLAMSTIARRKFLARLTDNLTPFTSNATCVAQEIESALFTAYGQMYNLPKSYGQKARQLLFNLKDARNSALRERLFSGELPAAALVRMSASNMANPQLVRQREQWIKKRTHEVT--RDTRAHEGFTQSDMFECRSCGSHRTCYRQWRRKAIVDRVRVIVLCLDCPYRWEL 277
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: F0W8D8_9STRA (Uncharacterized protein AlNc14C236G9384 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8D8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.160e-25
Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:  523 DDLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAE----DIEGAIFALSGRF--VGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVT-SSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            +DLP E+L K+AAF  + R VSK +        R++  A L+   +   D ++    ++E  +F L      + KAY  KAR+L FNLR  +ND LR+ + SG L +  LVRMS++E+A   +  +R++  +KR  EV  ++ D  + T ++ F C  CG  RT+YR WRRKA+VDR R+II C QC + WEL
Sbjct:   86 NDLPMEVLLKIAAFTQLGR-VSKAWSLAMTTYSRRKFQACLDKIMRPLADNSDQIAMEVENQLFELYKECFTLPKAYGQKARQLLFNLRDSRNDLLRDRLMSGELSAAALVRMSANEMANPQLVKQRKQWIKKRTYEVMRNAPDLESLTESDMFECRSCGCSRTRYRQWRRKAIVDRTRIIIICTQCPYRWEL 277
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A024GVT2_9STRA (TFIIS central domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVT2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.140e-25
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:  511 GLPLDDLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAE----DIEGAIFALSGRF--VGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVT-SSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            G   +DLP E+L K+AAF  + R VSK +        R+R    L    +  TD  +    ++E  +F L      + KAY  KAR+L FNLR  +ND LR+ + SG L +  LVRMS++E+A   +  +R++  +KR  EV  ++ D    T ++ F C  CG  RT+YR WRRKA+VDR R+II C QC + WEL
Sbjct:   71 GFIANDLPLEVLLKIAAFTQLGR-VSKAWSHAMTIYSRRRFQDCLSKIMRPLTDNFDRIVMEVENQLFELYKECCTLPKAYGQKARQLLFNLRDSRNDFLRDRLLSGELSASALVRMSANEMANPQLVKQRKQWMKKRTYEVMRNAPDLEGLTESDMFECRSCGCSRTRYRQWRRKAIVDRTRIIIICTQCPYRWEL 266
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A2D4CF48_PYTIN (TFIIS central domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF48_PYTIN)

HSP 1 Score: 112 bits (279), Expect = 1.360e-23
Identity = 69/189 (36.51%), Postives = 104/189 (55.03%), Query Frame = 1 
Query:  526 DLPDEILEKVAAFRLMPR-CVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGR--FVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPN-HTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            +LP E+L  +  F  + R C +     I  +    R+  AL   +      A+D+E A+F   G    + K+Y  +AR+L FNL+  +N  LRE +FSG L + VLVRMS+ ++A   +  +R++  +KR  EV     +P+  T T  F C +C    T YR WRRKA+VDR R+I+ C+ CR  WE+
Sbjct:   84 ELPQEVLVNIFGFAQVGRVCKAWSLAMISRRKFTARLTEALTPFSSAANVVAQDVEAALFDAYGHKFSMPKSYGQRARQLLFNLKDTRNSALRERLFSGELSAAVLVRMSATDMANPQLVRQRQQWIKKRTHEVMRDAGTPDGFTPTSLFECRQCSSRSTCYRQWRRKAIVDRTRIIVVCMDCRSRWEV 272
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: W2QKW7_PHYPN (TFIIS central domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QKW7_PHYPN)

HSP 1 Score: 108 bits (270), Expect = 1.010e-22
Identity = 72/191 (37.70%), Postives = 103/191 (53.93%), Query Frame = 1 
Query:  529 LPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDT-----AEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            LP E+L  + +F  + R V K +    + + R+R  + L    + P DT     A D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS+ ++A   +  +R+   +KR  EV           ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:   52 LPQEVLALIISFGQVGR-VCKSWSLASIAVARRRFSSRLADILR-PLDTNALAVALDVEAELYAAYGQSYSLTKAYAHKARTLLFNLKDSRNVDLRNRLLSGELPSHSLVRMSAPDMANPQLARQRKEWIKKRTHEVMRDGREAEGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 240
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A6A4CXU8_9STRA (TFIIS central domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CXU8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.120e-22
Identity = 74/191 (38.74%), Postives = 102/191 (53.40%), Query Frame = 1 
Query:  529 LPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTD-----TAEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            LP E+L  V +F  + R V K +    V + R+R  + L    + P D      A D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS  ++A   +  +R+   RKR  EV       +   ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:   73 LPQEVLALVISFGQVGR-VCKSWSLASVSVARRRFSSRLTEILR-PLDPNAVAVALDVEAELYAAYGQSYSLTKAYAHKARTLLFNLKDSRNVDLRNRLVSGELPSHSLVRMSGPDMANPQLVRQRKEWIRKRTHEVMRDGREVDGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 261
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A329RSA8_9STRA (TFIIS central domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329RSA8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.000e-21
Identity = 72/191 (37.70%), Postives = 101/191 (52.88%), Query Frame = 1 
Query:  529 LPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDT-----AEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            LP E+L  + +F  + R V K +    + + R R  + L    + P D+     A D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS  ++A   +  +R+   RKR  EV           ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:   72 LPQEVLALIISFGQVGR-VCKSWSLASIAVARCRFSSRLTDILR-PLDSNALAVALDVEAELYAAYGQSYSLTKAYAHKARALLFNLKDSRNVDLRNRLLSGELPSHSLVRMSGPDMANPQLARQRKEWIRKRTHEVMRDGREAEGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 260
[Close]
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: K3WDL3_GLOUD (TFIIS central domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDL3_GLOUD)

HSP 1 Score: 106 bits (265), Expect = 1.300e-21
Identity = 71/193 (36.79%), Postives = 108/193 (55.96%), Query Frame = 1 
Query:  526 DLPDEILEKVAAFRLMPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTD-----TAEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELA-PLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 1080
            +LP E+L  + +F  + R V K +      + R++    L S   LP        A+++EG +F + G+     K+Y  KAR+L FNL+  +N  LR+ + SG L +  LVRMS+ ++A P  VR  +E I ++    +  SR+      T+ F C  CG  RT+YR +RRKA+VDR R+I+ CL C +SWEL
Sbjct:   96 ELPQEVLVIIMSFGQVGR-VCKPWSLAMSTLARRKFSTRL-SEILLPFTPNALVVAQEVEGELFEVYGQTFALPKSYGQKARQLLFNLKDTRNAALRDRLLSGELSAHALVRMSAADMANPQLVRQRKEWIKKRTFEVMRDSRELDGFMETDLFECRSCGSSRTRYRQYRRKAIVDRTRIIVLCLMCPYSWEL 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G355_ECTSI3.060e-8871.70TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KU52_9PHAE1.460e-5066.46TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A8K1FLZ7_PYTOL1.620e-2740.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W8D8_9STRA1.160e-2539.90Uncharacterized protein AlNc14C236G9384 n=1 Tax=Al... [more]
A0A024GVT2_9STRA4.140e-2540.10TFIIS central domain-containing protein n=1 Tax=Al... [more]
A0A2D4CF48_PYTIN1.360e-2336.51TFIIS central domain-containing protein n=1 Tax=Py... [more]
W2QKW7_PHYPN1.010e-2237.70TFIIS central domain-containing protein n=8 Tax=Ph... [more]
A0A6A4CXU8_9STRA4.120e-2238.74TFIIS central domain-containing protein n=5 Tax=Ph... [more]
A0A329RSA8_9STRA1.000e-2137.70TFIIS central domain-containing protein n=10 Tax=P... [more]
K3WDL3_GLOUD1.300e-2136.79TFIIS central domain-containing protein n=1 Tax=Gl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7982contigH-elongata_contig7982:2772..9954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue5e-66
Seed eggNOG ortholog2880.D7G355
KEGG koko:K03145
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG1105@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionTranscription elongation factor S-IIM
Ec32 orthologEc-03_004550.1
Exons7
Model size2970
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.125041-UTR-H-elongata_contig7982:2771..46581622931203.125041-UTR-H-elongata_contig7982:2771..4658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 2772..4658 -
1691679739.9599137-UTR-H-elongata_contig7982:2771..46581691679739.9599137-UTR-H-elongata_contig7982:2771..4658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 2772..4658 -
1622931203.2841883-UTR-H-elongata_contig7982:9014..90471622931203.2841883-UTR-H-elongata_contig7982:9014..9047Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 9015..9047 -
1691679740.0497103-UTR-H-elongata_contig7982:9014..90471691679740.0497103-UTR-H-elongata_contig7982:9014..9047Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 9015..9047 -
1622931203.298134-UTR-H-elongata_contig7982:9417..99541622931203.298134-UTR-H-elongata_contig7982:9417..9954Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 9418..9954 -
1691679740.0629706-UTR-H-elongata_contig7982:9417..99541691679740.0629706-UTR-H-elongata_contig7982:9417..9954Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7982 9418..9954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.150371-CDS-H-elongata_contig7982:4658..47091622931203.150371-CDS-H-elongata_contig7982:4658..4709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 4659..4709 -
1691679739.9778132-CDS-H-elongata_contig7982:4658..47091691679739.9778132-CDS-H-elongata_contig7982:4658..4709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 4659..4709 -
1622931203.1761136-CDS-H-elongata_contig7982:5537..56541622931203.1761136-CDS-H-elongata_contig7982:5537..5654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 5538..5654 -
1691679739.9891477-CDS-H-elongata_contig7982:5537..56541691679739.9891477-CDS-H-elongata_contig7982:5537..5654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 5538..5654 -
1622931203.1975622-CDS-H-elongata_contig7982:6828..69091622931203.1975622-CDS-H-elongata_contig7982:6828..6909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 6829..6909 -
1691679740.0092452-CDS-H-elongata_contig7982:6828..69091691679740.0092452-CDS-H-elongata_contig7982:6828..6909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 6829..6909 -
1622931203.222795-CDS-H-elongata_contig7982:7445..75501622931203.222795-CDS-H-elongata_contig7982:7445..7550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 7446..7550 -
1691679740.019485-CDS-H-elongata_contig7982:7445..75501691679740.019485-CDS-H-elongata_contig7982:7445..7550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 7446..7550 -
1622931203.2436223-CDS-H-elongata_contig7982:8255..83691622931203.2436223-CDS-H-elongata_contig7982:8255..8369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 8256..8369 -
1691679740.0293581-CDS-H-elongata_contig7982:8255..83691691679740.0293581-CDS-H-elongata_contig7982:8255..8369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 8256..8369 -
1622931203.2679684-CDS-H-elongata_contig7982:8969..90141622931203.2679684-CDS-H-elongata_contig7982:8969..9014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 8970..9014 -
1691679740.0392952-CDS-H-elongata_contig7982:8969..90141691679740.0392952-CDS-H-elongata_contig7982:8969..9014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7982 8970..9014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7982.15634.1prot_H-elongata_contig7982.15634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7982 4659..9014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7982.15634.1

>prot_H-elongata_contig7982.15634.1 ID=prot_H-elongata_contig7982.15634.1|Name=mRNA_H-elongata_contig7982.15634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRF
VGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLS
VRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKA
VVDRIRVIIQCLQCRHSWEL*
back to top

mRNA from alignment at H-elongata_contig7982:2772..9954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7982.15634.1 ID=mRNA_H-elongata_contig7982.15634.1|Name=mRNA_H-elongata_contig7982.15634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7183bp|location=Sequence derived from alignment at H-elongata_contig7982:2772..9954- (Himanthalia elongata Himel1 dioecious)
GTATCGTCTGCTGTAAAGGAGGAGGAATGGCGACGGTCGCCGCCTCCCCA
ACGATCGTGCTACGACAAAACCCCTTCATCTTCCGACATTGGTAACGACA
TCGGCGGCGGCAGCTGCGGCGGAGGCGGTGGCAGGACCATCAACTCGTGC
ACCAGCAGCAGTACCTGCGGCATCACAACCACTGGCAGAATCTACGACAG
CGCCCGTAGCGGCACTGGCGCCGGCGCCGGCCGCAGCTTGGGTGCTGCAT
CCTTTGGCGCCTCGTTCTCATCTTCTTCTTTTTCTGCCGCCGATGCCGTC
GCCCACGCGCTCGGCCCAAGCGCCAAACGACGAGCGGAGGGGGCGCAGTT
GCCACCGCTTACGCCTAGGGACTACGAAAAAATCGGGCGCCAACACGCGG
TTGGGCCTGGTGGTGCCGCCTCAGAGATCGCGAGGACTGGTGCTGGAAAG
AGGAAGAAGCGGGTGCCGTCGCCTCCTGTCTGGCCCCCGGGGGGCCTCAA
GGAAGGAGAAGGACTCCCGCTTGATGATCTCCCTGATGTGAGTGATCGCA
TGGTATACTGTGGTGCATTTGGGCGGTTTGTCTTCGCCGGCCTAGAAATG
CCCCGACGCCAGCCGTATCCGCGACCTCCCCACCCCCCCCCATCCCCCCC
CATCCCCCCTCCCCTGGTGGACGCAATAACACAATGAGATTCGGCGCACA
TTATCTGTTGAAGACCTAGCGAATCAAAAGGGGAGGGGTGGAGATCGGTT
GTTGATTTGCACAGTTACGGAACGGGACGTGTTCCTCGAAGAGAGGTTAT
TGACACTATCGGCCGAAAAAAACGCCAATTCTGCTTGAGGGTGCCATATC
CCGGCTGAATTCGTTGCCTGCTGCCCCCCCTCCCCATACCATGCTCGGGC
GTTGCAGGAAATCCTGGAGAAGGTCGCGGCTTTTAGGCTCATGCCTCGTT
GCGTGTCGAAGCGGTTCCAGCGCATTCGAGTCAAGGTGAGTTCACAGGGA
GCATGACACCCTTCCGTTCCTTTCCGCCTTTTCCCTCGAGAGGCCAAGGC
GCATGATGAGTTAGTTGTCTCCCATGGTATTCTGAAAAGCCGTCCCAGCC
AGAAACATGGGCAAGGGTTCGAGGGAAACAGTGAGGGTTCGATGGGTTCT
GTAGGGCTGTAGCGGGTCTCGTGAAAGCAGGAGGGACAACAAGGGTCAAC
CATCGACCGACCATGACAATGCGTAGGAGTGCTAAGCTTGCATCGAGATA
AAAAAAAATCGAAGGCGTGAATCAACCGGGGAGAGAGATGAGCTGGCCCT
GTAAGGCCGCCGATGGGATGGGCAATGTTGCAGTAGGTGGTACACTGGTA
ATGATAACCTAGCACATTGGAAGGGGGAGCATCGATCAGAAAGTGAGAAA
ATGATGGGTTCGATCGCAGCAAGGACAGGAAGGGCGACATCTCGTCGCGT
GGGCGTACTGCCGTAACGAGAGACATATTACCTTACCGCCCGTTCGTGTC
TGGATTTTTTTTTCGTTCTCCTCGGGACTGACGGTAACGCATGTCCCCCC
CCACCCTCCTCACTCTCGTCCCCCGTTGCGGGTAGATTGTACGGCAGCGG
GTCGTCGCCGCCCTTGAATCTTCCGCGAAGCTTCCGACCGACACGGCCGA
GGACATCGAGGGAGCGATCTTCGCGCTCTCGGGCCGCTTCGTCGGGAAGG
TGTCCTAATTGCGGCTGTCTAGGGAGCGGTCTTCTTCGCGCGCCCTGTCT
ACCCGCTACGTCCTGAGAGAACGCGCCCCCCTTTCTTGTGTGATAATTTT
CTCTCTTATGATTTTCTCCCAACAAGGCGACAAACAGCGCAAAACAGCCA
AACCCTAGTGCGGCGGCGTTAGGAAATATCTTGTATGATCTCTTTGAAAC
AGTTCTTCTCCAGCGCCACCACCCTTCCGCATTGTGGACAGAGATTGAGA
GGGGAGGGTGGGGGGGTGAGCGGGGGTCTCGATGAAGGTGATATCTTCAA
GCATCCCGGTCAGTGTACGTAAGAGGCCGGTGCCAGCCAACGAGGGGGAT
AAGTTCTGGCTGGCTTGCCCCCCTACCTGCCTTTTGCCTGCTCGACCTAG
TAGGGTTCGACGACCTCACCAATATCCTCAAGCGAAGCAAAGCAAAGCAA
AGCGCGCACGCGTTACGAGCCAGGGGATTCCGAGAAGGGTGTTGATAGAC
TGTAGTTTGTGAGAGGAGGAAGGAGTAAGGAGCAAGCCGGGCGCAGTAAT
ATCCTCCTGTGTCGGAGAGCCGAAAGGATAAACCATTAGCCTTTCCTGCC
CGTTTCAGAATGCCAATGGTAATTGCTCTCGTGCTTATTTATACACTCTT
TTGTTTTTGTTTTGTTTTGTTTCGTTTTCTCGATACGTTTTTATTTTATT
TTAGGCGTACAAAGCAAAGGCCAGAGAACTTTCGTTCAACCTACGAGCGG
GCAAGAACGACCCTCTGAGAGAGGCAGTGTTTTCAGGGGCCTTATTATCT
TGGGTATTGGTGAGTCTTCCCCTCCCCGCCTTGATCTTCCCGCTTCACGT
GACAGGGAAGCTCTCATATAACCAAAACCGCCTCCGCAGCGTCTTTTGGC
CTAGATCCCTACGAGCTTTCTGCAGCAGGCGCTGTAGAGATCCTTCGTTG
GACCAGGAGGGCGTTGTGGCCATGGCATGCGCAAGCGTGCGTGCGTCGCA
ATGGCACGGCGAGGGAGTGACCCGATGGCCTCACGAAGGGGTGATCGCAT
AGACTGCCCCGTAGAAGTTGGGAACGGGATATGTATCTCAATCGCCGTGG
CGTGATGCGCGTTAAAACCTGCAATACTGCTAAGTCATCCTTTTTTAAAT
AAATAATTACCCTGTAAACAATTGGTTCGCTTTCAAAACGTTGAGGTGGT
GGCTCTATAATATCAAGTACTTCTTAAGATTGTGACATTTGTTTCAAATT
TCGGTCCCTCGTTGTCAAAATTCCGTGAAAAGCCTTTTTGCCTCGCTCTC
AGGAGGGCTGAAAGTTTTCGGCCTTTTTTGGAAACATACACGTAGGTGCG
AATGAGCTCGGACGAACTGGCACCCCTGTCCGTGCGGCTGGAGAGAGAAA
GGATCGCCCGCAAGCGTATTAGAGAGGTGAGGTCTCAACACTCTTGCCGT
CGCATTCTCAGAGATATATACTATATATATATATAGAGATATATACTATA
TATATATATATATATATAGTACAGAGAAACCTCCTACAGTCGCTGGATCA
AAGAAAAAAGCTTCCCGGCGCAGCTGATCGTGAGACGGCAGGAGCACATG
GCAGAGATTGCGTGAGTTGGGTTGTCCGAAGCGACGGGCACCTTTCGCCG
CTGTCGTGACAACGACAAAAAGAGCCGCACTGCGGGACACGGCAAAGGTA
GTAATGCACACATTCGAACCTGACGATACTATTAGTTGGTTCCCTGGACT
GCTGCACTTCTCTCACGGTGATAAGAACGCGTGGATGTTCGGAGGGTTGG
AATTAGTTCATTTTTTTTTAAAGAAGAAAGAGCCGAACTGCGGGGTACGC
TCTAAAGACTCCACGAGGTGGTTCTGGGTTCAAGATGATTGTCCCCGGCG
GAGTAGCCCCCCCCTCCGCGATACCGTAGGCATACGTCATTTCCTTTGCA
TGGTTACGGAGCAAAGACAGCTGCGTATACTGAGAGGTTTTTCTTCAAAG
GGAGGAGGAGGGGGGCAAGGCTGCCAGTTTTCCAATTTTGACGTGAGCAA
AGTCTTGAATTGTGAAAAAAGCCGTGGGGACTTACGTGAAATTAATAAAC
ATGTTTCATGGCGCATACGTAATTGCTCCCTGTTAGCGTTTTTTTCTTCC
TCCCAGGCATTTCGTACGAAGGCACTCTGCAGATGCGCCGCACTGGCACC
TACCTCATTATAGGCCATAAGGTCGCGCGAAACAGTCTCTCTAACGATCA
ATCAATTCAATTGAATACGCCCCCTTCCCGATTATCTGTGCTGAACCTGA
TATAACCTCTCTACATGCTCTCTATGGGCTCTAGTGTGTAATATTTGTTT
CGACGGAAGCAACAGCAGCAACAGCAGCAGCCGCAGCAGCGGTTATTGAT
ACCCTTGTTCCGTCCCCTGACAGACCACACACATGGTCGGGGAGAGATAA
AACTATTATTATCACAATTTCATCATGGTAGCGGCACGGGGCTACCTGTA
TATATGTATACAAGGCAGCGGTAGGTTTTACGCGGCGTTTGCGTTGCCCC
CCTTGCTGCCCTGCTCGCGCGCGCGTGGGATGGGTGGGTCACGATTGAAG
GTCACCTCCTCGAGAGACAGCCCGAACCACACGGTGACAGAGCGGTTCAC
CTGTCCGGAGTGCGGCCATGAGCGGACACAGTACCGGACGTGGAGGCGGA
AGGCCGTCGTCGATCGGGTGAGTCATCTTTCATCTCGTCGTCGTCGTCCT
CGAAAGAAAATTAGAAAATCGTGTAACGAATTGCGCAGGTAATGACTAAA
ACCCCCCTAATAATCTGGTTGGTGTATTTTCTTTTTAATATTCTATGAAG
ACCTATATAGTACACTATAGCCCGAGATAGGTGACATGGTATGACACACC
TTAGCCCCTATGGAACTCGATCTGTTTTTTACATACTAAATTCAATATAA
AAGTTGAAATCCAGTTGCGAAAGGGTTAATGGACGATGATCTCTGCAGCT
GCTTTCTCGAAAGCCGAGGCCGTAGCCCCAACACATGAAGCACCGCGATT
GTGGAAATATCTCATCGAGGTCTTTTCCATGTCCGCGGCTTGATTAGTCT
CCAACTTCATTGTTGCGGGAAACCGGTCCCCGGAGACGGCGGCGTGTCAT
TCACCCATCACATGCCGCACGACAATGTCCTAGCGCGCCATGGTTGCATT
GTCTTCATGATCGTGGAAAAACATTCGTGAAAACTCCGCAAACACTTCGC
GCGGAAACTTTCCCGAAAGAAGACCTCAGACTCGCATTCAACCGTATTTA
CTTCTTGTGACGATCATTCTGTCCGTGCACACCACTGTCATCTCTTGGAG
CCCAAGCTCATGCAGAGAACATTTTGCTTCGCTTGCCTAGAGTAATGTTG
GGACTCCAGGAGATTTTTCTCTCGATCAAGCACCTTTTTTGCTCCCGAGT
GGTTTCATTTTTTTTTTTGCCTGCACCCGCCGTGTGGCCCTGCTCTTGAA
ACCCTTTTCCTTGTCTTTTTGCATGCTACAAACGTGTCGGAACAGATACG
AGTCATCATACAGTGTCTTCAGTGCCGGCATTCTTGGGAGCTATAGGCTG
TTGGAGACTTTCGTGTTGCGAATGACAAGTACAGTGGTAGCTCACGCATG
ATTTAGGCGCTGCCTTGATTTGTCTCGGTTACAGCATGTTGCCGAGGAAG
ACGGCGACGGCAACGGTGGCGCTCGAGTGATATTGCGGGAACTCTGTACA
TATCGTAAACGATCCAGTCAGCGATTTCAGGCTGGACGGTAGCTTGTATG
AATGGCGCGTGAATCTGAAACTGAAACCGTATGCATACCATAGGAAAACT
AATGCCCCTTCAGGCTTTTCAATAGGGCTGTCATGGCTCGAGTTAACCTT
CGTACCCAAGAGGCATGTTTAGTGTTTAGAGCAGTAGAATTAATATCGTT
TGCCACAAATCTGATGCGTAGCAGGTTTTAACCACGTAGCTAGTATAGTA
GCTAGTTACTGTCGCCAGCTCTGCCCTCGAGATCCCACCCAGCAAGGCAG
GCAGGCCACGCAACGAGTATTACGCTCGGAGTTTCAGTGGTATCTCAATG
TAGTGGATGTCTCGAACGAACAAGACTATACAAAGCGGGCTGACCGTTCG
AGTCGTTTCTTCGCCATTGTAAACTTCGGGGAGGCTCCACACCTCGCAGC
ATGGTTGAAGGTAGAATCCATGCTTGCACGACATGGGCGTGGATCCAACG
GGATGTTGAACTGACTCGGGCATGGAGCTTTGCTGGAGGCTGTGAGGCTG
GCGTGTGACCAACTGGGTAGGGAGGGGGGATAGGGTCAGCCGGAGGCGCC
GCCTTTTTCCTTCGTCATCTAACGCTGCCCAAAGCGGTCTTCGCAGCGGT
GGGTGTTCACACCGATGCCGTGACACAGGAGAAGACTTGTCGTTGAGCGC
GATAGGCAACCTGGCTGCGAACAGACCAAACCGCAGCTGGAGGCATTTAC
CGTGACGCTGGTGATGCATTCGTAAAATAGTTATATAGCCGTAAGATACA
TGGCGAAGAGCGCGATCGCGTGCGCTGGCTATCGATATGTTTGTGTATGC
TGGTACACTCTGCTTTAACCGACGAGAAAACAGCCACAAAATATGTTCAC
ATTCACATTCACATTCTCATTCGTGGAAGAAGTCGTAAAAAGAACTCCCG
GCTTTGTGCAATGCCTGGTATGCGCACGTTCAAGCAATATTGCCACAGAT
GGCTGGCTCTCAGGCTGTGGGTCAACGGACGTGCGTGAACAGACAAACGC
CACGCGACTTCCATGGAGGAATCCAGATGGTGGATGAATCCAGGTGTGTG
GAGGAATCCAGGTATATAGCTAGTGCTTCAAGAATGTAGAATTTATGGAC
GAAGGCGAGTAGGACACGCTAGGATGTACACCTCAAGCCAATATCGCGAG
ATGGTGGGGCCGGCAAGAGAGGGACGTGCCAAGCACAAACGTTGATGCTA
TTTATTTATAAATTGACTCTGTCGGAAGGGCTCAAATTTTCACACAAAGC
TGATAACCTGGCTGCTGTCAATGTTTTTAAAAAAATCTCTTCGACGCGCA
TCCACGCCTTCGATGAACTGAAAAACCTGTTGAACTGGAAAACCGTCATA
ACAACGTAAGGTACTGTATGTCTTTTTGTGACACAAGCGCCGCAGGTACC
GGCCCTTCCTTATTTAGACTCGTTTCAAAGGCTTTTCGAATAAGTGTCAG
GGATAATACCTCCTTCTCAGTGAGTGCTCTTAACCTACGCAGCATTCGTT
GCGTGGATACACCGACAACGCATCGCGGTTCAGGCTAGATGTATAAAGCA
TACTTGCTGTTGATCAGCTTGCAGGAGCGATGCACGAAGATGTTAATTAT
CACAGCGAAAAAAAATCAGCGGTGTCCCCCGGTGAAATTTGATGTTATTT
GTACCCAAGAAACCCATTCGCGTACAAGCCAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7982:2772..9954-

>mRNA_H-elongata_contig7982.15634.1 ID=mRNA_H-elongata_contig7982.15634.1|Name=mRNA_H-elongata_contig7982.15634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig7982:2772..9954- (Himanthalia elongata Himel1 dioecious)
ATGCCTCGTTGCGTGTCGAAGCGGTTCCAGCGCATTCGAGTCAAGATGCC
TCGTTGCGTGTCGAAGCGGTTCCAGCGCATTCGAGTCAAGATTGTACGGC
AGCGGGTCGTCGCCGCCCTTGAATCTTCCGCGAAGCTTCCGACCGACACG
GCCGAGGACATCGAGGGAGCGATCTTCGCGCTCTCGGGCCGCTTCGTCGG
GAAGATTGTACGGCAGCGGGTCGTCGCCGCCCTTGAATCTTCCGCGAAGC
TTCCGACCGACACGGCCGAGGACATCGAGGGAGCGATCTTCGCGCTCTCG
GGCCGCTTCGTCGGGAAGGCGTACAAAGCAAAGGCCAGAGAACTTTCGTT
CAACCTACGAGCGGGCAAGAACGACCCTCTGAGAGAGGCAGTGTTTTCAG
GGGCCTTATTATCTTGGGTATTGGCGTACAAAGCAAAGGCCAGAGAACTT
TCGTTCAACCTACGAGCGGGCAAGAACGACCCTCTGAGAGAGGCAGTGTT
TTCAGGGGCCTTATTATCTTGGGTATTGGTGCGAATGAGCTCGGACGAAC
TGGCACCCCTGTCCGTGCGGCTGGAGAGAGAAAGGATCGCCCGCAAGCGT
ATTAGAGAGGTGCGAATGAGCTCGGACGAACTGGCACCCCTGTCCGTGCG
GCTGGAGAGAGAAAGGATCGCCCGCAAGCGTATTAGAGAGGTCACCTCCT
CGAGAGACAGCCCGAACCACACGGTGACAGAGCGGTTCACCTGTCCGGAG
TGCGGCCATGAGCGGACACAGTACCGGACGTGGAGGCGGAAGGCCGTCGT
CGATCGGGTCACCTCCTCGAGAGACAGCCCGAACCACACGGTGACAGAGC
GGTTCACCTGTCCGGAGTGCGGCCATGAGCGGACACAGTACCGGACGTGG
AGGCGGAAGGCCGTCGTCGATCGGATACGAGTCATCATACAGTGTCTTCA
GTGCCGGCATTCTTGGGAGCTATAGATACGAGTCATCATACAGTGTCTTC
AGTGCCGGCATTCTTGGGAGCTATAG
back to top