mRNA_H-elongata_contig79769.15630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79769.15630.1
Unique NamemRNA_H-elongata_contig79769.15630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: D8LTJ6_ECTSI (Myosin IA, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.570e-36
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            VN SIEC + GLTMGILDIYGFE+FD NDFEQFCINYVNEKLQQYFIDHTIRAEQ+DYE EGV+WEHV YFNNK
Sbjct:   98 VNRSIECATEGLTMGILDIYGFEIFDSNDFEQFCINYVNEKLQQYFIDHTIRAEQDDYEAEGVEWEHVDYFNNK 171
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A6H5KZ38_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ38_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.570e-36
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            VN SIEC + GLTMGILDIYGFE+FD NDFEQFCINYVNEKLQQYFIDHTIRAEQ+DYE EGV+WEHV YFNNK
Sbjct:  447 VNRSIECATEGLTMGILDIYGFEIFDSNDFEQFCINYVNEKLQQYFIDHTIRAEQDDYEAEGVEWEHVDYFNNK 520
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A8C3I6W2_CHRPI (Myosin IC n=3 Tax=Chrysemys picta bellii TaxID=8478 RepID=A0A8C3I6W2_CHRPI)

HSP 1 Score: 109 bits (273), Expect = 2.860e-26
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            VN+S+ C  +   +G+LDIYGFEVF HN FEQFCINY NEKLQQ FI+ T+++EQE+YE+EG+ WE V YFNNK
Sbjct:  368 VNLSLTCWRSATVLGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEEYESEGIAWEPVQYFNNK 441
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A7S2RFP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFP1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.800e-26
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            +N  I  + + L++G+LDIYGFE+F+HN FEQ CINY NEKLQQ FI+ T++AEQE+Y  EG+KW H+ +FNNK
Sbjct:   53 INKVIHTEKSELSLGVLDIYGFEIFEHNSFEQLCINYANEKLQQLFIELTLKAEQEEYAREGIKWSHIDFFNNK 126
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A3P7E3V2_WUCBA (Myosin motor domain-containing protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7E3V2_WUCBA)

HSP 1 Score: 100 bits (250), Expect = 1.120e-25
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            + IS +  +  L++GILDIYGFE+FD+N FEQFCIN+VNEKLQQ FI+ T++AEQE+Y +EG+ W  + YFNNK
Sbjct:   48 IKISSQLSAKPLSVGILDIYGFEIFDNNGFEQFCINFVNEKLQQIFIELTLKAEQEEYISEGILWTPIEYFNNK 121
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A4Y2WPI6_ARAVE (Unconventional myosin-If n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WPI6_ARAVE)

HSP 1 Score: 103 bits (258), Expect = 3.140e-25
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            VN +++ + + LT+GILDIYGFE+F  N FEQFCINYVNEKLQQ FI+ T++AEQE+Y  EG+KW  + YFNNK
Sbjct:  149 VNSAMKTEMSELTIGILDIYGFEIFHKNGFEQFCINYVNEKLQQIFIELTLKAEQEEYVQEGIKWNSIEYFNNK 222
[Close]
BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: D2W159_NAEGR (Myosin n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W159_NAEGR)

HSP 1 Score: 105 bits (263), Expect = 6.430e-25
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            +N +++ K   L + +LDIYGFE+FD N FEQFCINYVNEKLQQ FID T++AEQE+Y  EG+KWE + YFNNK
Sbjct:  361 INDAMDTKKNTLILAVLDIYGFEIFDKNGFEQFCINYVNEKLQQIFIDLTLKAEQEEYTQEGIKWEPIQYFNNK 434
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BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A6Q2WZ10_ESOLU (Unconventional myosin-Ic n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2WZ10_ESOLU)

HSP 1 Score: 105 bits (262), Expect = 8.770e-25
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            +N S+  K +   +G+LDIYGFEVF HN FEQFCINY NEKLQQ FI+ T+++EQEDYE EG+ WE V YF+NK
Sbjct:  362 INKSLAFKGSSSVIGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEDYEAEGISWEPVKYFDNK 435
[Close]
BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: A0A6Q2Z485_ESOLU (Unconventional myosin-Ic n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2Z485_ESOLU)

HSP 1 Score: 105 bits (262), Expect = 8.780e-25
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            +N S+  K +   +G+LDIYGFEVF HN FEQFCINY NEKLQQ FI+ T+++EQEDYE EG+ WE V YF+NK
Sbjct:  362 INKSLAFKGSSSVIGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEDYEAEGISWEPVKYFDNK 435
[Close]
BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Match: D3BGI5_POLPP (Myosin IA heavy chain n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BGI5_POLPP)

HSP 1 Score: 105 bits (262), Expect = 8.780e-25
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHTIRAEQEDYETEGVKWEHVVYFNNK 222
            +N SIE K+ G  +G+LDIYGFE+F++N FEQFCINYVNE LQQ FID T++ EQE+Y TEG+KW  V Y NNK
Sbjct:  388 INKSIEVKTKGKVIGVLDIYGFEIFENNSFEQFCINYVNETLQQIFIDLTLKTEQEEYVTEGIKWVPVDYVNNK 461
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79769.15630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ6_ECTSI1.570e-3686.49Myosin IA, putative n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KZ38_9PHAE1.570e-3686.49Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A8C3I6W2_CHRPI2.860e-2664.86Myosin IC n=3 Tax=Chrysemys picta bellii TaxID=847... [more]
A0A7S2RFP1_9STRA3.800e-2659.46Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A3P7E3V2_WUCBA1.120e-2560.81Myosin motor domain-containing protein n=1 Tax=Wuc... [more]
A0A4Y2WPI6_ARAVE3.140e-2563.51Unconventional myosin-If n=1 Tax=Araneus ventricos... [more]
D2W159_NAEGR6.430e-2563.51Myosin n=1 Tax=Naegleria gruberi TaxID=5762 RepID=... [more]
A0A6Q2WZ10_ESOLU8.770e-2563.51Unconventional myosin-Ic n=1 Tax=Esox lucius TaxID... [more]
A0A6Q2Z485_ESOLU8.780e-2563.51Unconventional myosin-Ic n=1 Tax=Esox lucius TaxID... [more]
D3BGI5_POLPP8.780e-2564.86Myosin IA heavy chain n=1 Tax=Polysphondylium pall... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79769contigH-elongata_contig79769:326..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue6.6e-31
Seed eggNOG ortholog2880.D8LTJ6
Preferred nameMYO19
KEGG rclassRC00005
KEGG koko:K00698,ko:K10352,ko:K10356,ko:K10357,ko:K17481
KEGG ReactionR02335
KEGG Pathwayko00520,ko04530,map00520,map04530
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0164@2759
EC2.4.1.16
COG Functional cat.Z
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko01009,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.6419954-CDS-H-elongata_contig79769:325..4161622931202.6419954-CDS-H-elongata_contig79769:325..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79769 326..416 -
1691679739.7895935-CDS-H-elongata_contig79769:325..4161691679739.7895935-CDS-H-elongata_contig79769:325..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79769 326..416 -
1622931202.6616368-CDS-H-elongata_contig79769:854..9851622931202.6616368-CDS-H-elongata_contig79769:854..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79769 855..985 -
1691679739.8121002-CDS-H-elongata_contig79769:854..9851691679739.8121002-CDS-H-elongata_contig79769:854..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79769 855..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79769.15630.1prot_H-elongata_contig79769.15630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79769 326..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79769.15630.1

>prot_H-elongata_contig79769.15630.1 ID=prot_H-elongata_contig79769.15630.1|Name=mRNA_H-elongata_contig79769.15630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
VNISIECKSAGLTMGILDIYGFEVFDHNDFEQFCINYVNEKLQQYFIDHT
IRAEQEDYETEGVKWEHVVYFNNK
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mRNA from alignment at H-elongata_contig79769:326..985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79769.15630.1 ID=mRNA_H-elongata_contig79769.15630.1|Name=mRNA_H-elongata_contig79769.15630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig79769:326..985- (Himanthalia elongata Himel1 dioecious)
GTGAATATTTCGATCGAGTGTAAGTCCGCCGGCCTAACAATGGGCATACT
GGACATCTACGGCTTCGAGGTGTTCGACCACAACGATTTCGAGCAGTTCT
GTATCAACTACGTCAACGAAAAGCTACAGCAGTGAGAAGAGATCGGGGTT
GGGGTTGGAGTTGGAGTTGGAATTAGAATTGGGGCTGATGATGTAGGAGC
AAGAAAACAATGGAACCGTGGCCCCACGGGTTTCGTCCTAATTTGGCTTG
TTTTTGGTCGTGTAATGTGTAATTACGCACGCCTGAGGAGCAGGGAATTT
TGTAAGACAAAAATTAAGATAATCATGTCCGATTGGCTTAGCCCCCGTGG
TTCCCAGGCAATGCAACTCTCTAGAAACCCCCTGGCGGCGATGGAGGGAG
GGAGGGGAAACGATCTTGTTTTACCATTCTAAAGAGAAAGAAAGCTTGGC
AACACGTGTGTGTTCGCCTGTTTGTTTGTGTGTATGATATATAGTATATG
ATACCGGGTATGTAATATAGTGTCTTTAGGGGGTTTTATTATTGTATCCC
CTCCCCTCGAATCCATTAGGTACTTTATCGACCACACGATCCGGGCGGAG
CAGGAGGACTATGAGACCGAGGGGGTGAAGTGGGAACACGTGGTGTACTT
TAACAACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig79769:326..985-

>mRNA_H-elongata_contig79769.15630.1 ID=mRNA_H-elongata_contig79769.15630.1|Name=mRNA_H-elongata_contig79769.15630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig79769:326..985- (Himanthalia elongata Himel1 dioecious)
GTGAATATTTCGATCGAGTGTAAGTCCGCCGGCCTAACAATGGGCATACT
GGACATCTACGGCTTCGAGGTGTTCGACCACAACGATTTCGAGCAGTTCT
GTATCAACTACGTCAACGAAAAGCTACAGCAGTGAATATTTCGATCGAGT
GTAAGTCCGCCGGCCTAACAATGGGCATACTGGACATCTACGGCTTCGAG
GTGTTCGACCACAACGATTTCGAGCAGTTCTGTATCAACTACGTCAACGA
AAAGCTACAGCAGTACTTTATCGACCACACGATCCGGGCGGAGCAGGAGG
ACTATGAGACCGAGGGGGTGAAGTGGGAACACGTGGTGTACTTTAACAAC
AAGGTACTTTATCGACCACACGATCCGGGCGGAGCAGGAGGACTATGAGA
CCGAGGGGGTGAAGTGGGAACACGTGGTGTACTTTAACAACAAG
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