mRNA_H-elongata_contig79663.15620.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79663.15620.1
Unique NamemRNA_H-elongata_contig79663.15620.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A6H5KFM7_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFM7_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 6.830e-76
Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 1
Query:    1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
            A CIY+MPI RCP CD DFG+DDGLFILPVEPYSA   F +D+ +  +  HQSRTGRWHSYETMYAQRIVADF+AGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRC  RP GEEHIAKHR+AQKRLSDLEE+
Sbjct:  100 ARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNFFEEDERKGGDREHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.910e-75
Identity = 118/141 (83.69%), Postives = 127/141 (90.07%), Query Frame = 1
Query:    1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
            A CIY+MPI RCP CD DFG+DDGLFILPVEPYSA  LF +D+ + R+  HQSRTGRWHSYETMYAQRIVADF+AGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRC  RP GEEHIAKHR+AQKRLSDLEE+
Sbjct:  100 ARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNLFEEDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: D8LLI7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLI7_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 3.690e-59
Identity = 105/149 (70.47%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    1 AGCIYAMPISRCPYCDQDFGS--DDGLFILPVEPYS-AGMLFG----DDKLRTRE-EHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
            A CIYAMPI+RCP CDQ F +  D GL ILPVEP+S AG   G    D +   RE    Q+RTGRWHS+ETMYAQRIVADF+AGT+PL EGTKLGN LCNILNCSPSRLSKKLKIGKK FQ+  DRP   EHIA+HR+AQKRLSDLEE+
Sbjct:   55 ARCIYAMPITRCPVCDQAFPNTNDGGLLILPVEPFSDAGGATGESEDDSRTGAREGAETQTRTGRWHSFETMYAQRIVADFDAGTLPLCEGTKLGNLLCNILNCSPSRLSKKLKIGKKCFQQREDRPMTPEHIARHREAQKRLSDLEEM 203          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A836CDJ8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.140e-37
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 AGCIYAMPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
            A CIY +P+S CP C  D    +GL +LPVEP++       D         + RTGRWH YET YAQ ++ DFEAGT+P+ EGTKL   LC +LNC+ +RLSKKLKIGK+++     R    E IA H   Q+R+S+LEE+
Sbjct:   38 ARCIYQLPLSECPVCRADMTQSEGLQVLPVEPHNNEPAENADT--------ELRTGRWHHYETQYAQHLMEDFEAGTLPIGEGTKLATLLCRLLNCNQTRLSKKLKIGKRFYAHGPTRIRTPEAIAAHSVRQRRISELEEM 170          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.010e-25
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query:  160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV 423
            RTGRWHSYET+YAQ ++ DFEAGT+P+ EGTKL + LC +LNC+ +RLSKKLKIGK+++     R    E IA HR  Q+R+S+LEE+
Sbjct:   68 RTGRWHSYETLYAQHVIDDFEAGTLPIGEGTKLASLLCRLLNCNQTRLSKKLKIGKRFYAHAPAREPTLEAIAAHRVRQRRVSELEEM 155          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A836CP88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP88_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.920e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQR 342
            R G+W   E  YA+R++A+F+AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R
Sbjct:    5 RRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRR 69          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.690e-9
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
            R G+W   E  YA R++ +F+AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R T
Sbjct:   40 RRGKWTPEEESYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 106          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A1E7FJB7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJB7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.180e-9
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  154 QSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT---DRPTGEEHIAKHRDAQKRLSDLE 417
            Q R G+W   E  YA R++ +F+AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R T   +R T E+ I K R     LSDLE
Sbjct:   46 QLRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADLNRLTPEQ-IQKSR---AELSDLE 136          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A448Z703_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z703_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.910e-9
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  154 QSRTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
            Q R G+W   E  YA R++ +F+AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R T
Sbjct:  101 QLRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 169          
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Match: A0A7S2NX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX07_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-9
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  160 RTGRWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQRCT 348
            R G+W   E  YA R++ +F+AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R T
Sbjct:  162 RRGKWTPEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRT 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79663.15620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFM7_9PHAE6.830e-7682.27RING-type domain-containing protein (Fragment) n=1... [more]
D8LER0_ECTSI1.910e-7583.69RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LLI7_ECTSI3.690e-5970.47RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CDJ8_9STRA3.140e-3748.23RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZCD8_9STRA1.010e-2559.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CP88_9STRA1.920e-1047.69Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4J6Z5_9STRA1.690e-946.27Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E7FJB7_9STRA2.180e-945.26Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448Z703_9STRA2.910e-946.38Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2NX07_9STRA2.990e-946.27Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79663contigH-elongata_contig79663:39..1106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue1.7e-61
Seed eggNOG ortholog2880.D8LER0
EggNOG free text desc.Ring finger
EggNOG OGs28HE3@1,2RTIT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79663.15620.1prot_H-elongata_contig79663.15620.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79663 39..1088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.5064409-CDS-H-elongata_contig79663:38..1651622931201.5064409-CDS-H-elongata_contig79663:38..165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 39..165 -
1691679739.2316158-CDS-H-elongata_contig79663:38..1651691679739.2316158-CDS-H-elongata_contig79663:38..165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 39..165 -
1622931201.518901-CDS-H-elongata_contig79663:459..5941622931201.518901-CDS-H-elongata_contig79663:459..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 460..594 -
1691679739.2417767-CDS-H-elongata_contig79663:459..5941691679739.2417767-CDS-H-elongata_contig79663:459..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 460..594 -
1622931201.5306952-CDS-H-elongata_contig79663:945..10881622931201.5306952-CDS-H-elongata_contig79663:945..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 946..1088 -
1691679739.2500944-CDS-H-elongata_contig79663:945..10881691679739.2500944-CDS-H-elongata_contig79663:945..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79663 946..1088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.5419443-UTR-H-elongata_contig79663:1088..11061622931201.5419443-UTR-H-elongata_contig79663:1088..1106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79663 1089..1106 -
1691679739.2651348-UTR-H-elongata_contig79663:1088..11061691679739.2651348-UTR-H-elongata_contig79663:1088..1106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79663 1089..1106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79663.15620.1

>prot_H-elongata_contig79663.15620.1 ID=prot_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MPISRCPYCDQDFGSDDGLFILPVEPYSAGMLFGDDKLRTREEHHQSRTG
RWHSYETMYAQRIVADFEAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK
IGKKYFQRCTDRPTGEEHIAKHRDAQKRLSDLEEV
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mRNA from alignment at H-elongata_contig79663:39..1106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79663.15620.1 ID=mRNA_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-elongata_contig79663:39..1106- (Himanthalia elongata Himel1 dioecious)
GCAGGCTGTATCTATGCGATGCCAATATCTCGGTGTCCTTACTGCGATCA AGACTTCGGGTCTGATGACGGTCTATTCATCCTCCCCGTTGAGCCCTACT CGGCCGGGATGTTGTTCGGCGACGACAAGCTCAGGACTCGCGAGGAGCAC CATCAGTCAAGGTAAGGCTACTACCGCGTGTATCGTTCGTTGAGTTTCCG TCGAGCCGCTGATTGGACAGGACGCTAACCAGCCAGAGGGCTAGTCTTGC TATCTCCACCCGCTGCGCGTGCGAGCAGTAACAAGGACGAGACAAGCATG GTAATACAGCGACAACAATAACAACATCAATCCGTCCGCTCTTAGTTATC CCTCGACCTATTTTATCGTTCCTCCTTACCATGACGAAAATTGAATGGCT TTGGTGTGGCTGATGCTCCTGCTGCTACCGCCGCCACCGAGTGCCCGCCA TCGCGGGGGAGGTTTTTCGTGCCCTTTTACATGACTATTTTGATCCGACG CAATCCTGACAGGACCGGGCGGTGGCACTCCTACGAGACCATGTACGCTC AACGCATTGTCGCGGACTTCGAGGCGGGCACCATGCCGCTCAGCGAAGGG ACCAAGCTCGGTAACTTCTTGTGCAATATACTCAACTGCTCGCCCTCGTG AGTGCAATGCTTGTTAAATATTTTGAAAACCTTGGGTGCGTGCGCACGTA CGCGCCTCCCTCCCTCCCGGCGCATCGTTTAGTTTGCCCTCGTTAAAGGG TTTCCATAAAGCCGGTAGGCGGAACCCGGGGTGTTGGGTGTGGGGCTCCA AAGCCTCTTGTTTCTGCTAAGAGTTGAGCTCTACCCCACACCTGCGTCGG GAAGCGCTTGTCTCGCATGCGCGTGAGCGGGTTTGTAGATGTAATTGTAC GTCGGCGTGTGTTTGTGGGTTTTGTTCCTGGATACCTTCAGACGGCTGTC CAAGAAGCTCAAGATTGGCAAGAAGTACTTCCAGAGGTGTACGGATCGAC CCACTGGGGAAGAACACATCGCGAAGCACAGGGATGCCCAGAAACGGCTC AGTGATCTCGAGGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig79663:39..1106-

>mRNA_H-elongata_contig79663.15620.1 ID=mRNA_H-elongata_contig79663.15620.1|Name=mRNA_H-elongata_contig79663.15620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig79663:39..1106- (Himanthalia elongata Himel1 dioecious)
ATGCCAATATCTCGGTGTCCTTACTGCGATCAAGACTTCGGGTCTGATGA
CGGTCTATTCATCCTCCCCGTTGAGCCCTACTCGGCCGGGATGTTGTTCG
GCGACGACAAGCTCAGGACTCGCGAGGAGCACCATCAGTCAAGATGCCAA
TATCTCGGTGTCCTTACTGCGATCAAGACTTCGGGTCTGATGACGGTCTA
TTCATCCTCCCCGTTGAGCCCTACTCGGCCGGGATGTTGTTCGGCGACGA
CAAGCTCAGGACTCGCGAGGAGCACCATCAGTCAAGGACCGGGCGGTGGC
ACTCCTACGAGACCATGTACGCTCAACGCATTGTCGCGGACTTCGAGGCG
GGCACCATGCCGCTCAGCGAAGGGACCAAGCTCGGTAACTTCTTGTGCAA
TATACTCAACTGCTCGCCCTCGACCGGGCGGTGGCACTCCTACGAGACCA
TGTACGCTCAACGCATTGTCGCGGACTTCGAGGCGGGCACCATGCCGCTC
AGCGAAGGGACCAAGCTCGGTAACTTCTTGTGCAATATACTCAACTGCTC
GCCCTCACGGCTGTCCAAGAAGCTCAAGATTGGCAAGAAGTACTTCCAGA
GGTGTACGGATCGACCCACTGGGGAAGAACACATCGCGAAGCACAGGGAT
GCCCAGAAACGGCTCAGTGATCTCGAGGAGGTAACGGCTGTCCAAGAAGC
TCAAGATTGGCAAGAAGTACTTCCAGAGGTGTACGGATCGACCCACTGGG
GAAGAACACATCGCGAAGCACAGGGATGCCCAGAAACGGCTCAGTGATCT
CGAGGAGGTA
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