mRNA_H-elongata_contig79628.15615.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE) HSP 1 Score: 350 bits (898), Expect = 1.230e-113 Identity = 184/256 (71.88%), Postives = 199/256 (77.73%), Query Frame = 1
Query: 25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
SEKKVRVC+ CY AGE+FRKA LSGSEEGAMAA+STGCVNLRVPYTIYHNELPVHCAA+GGNLNILAWLV+DRCCPLFLDR KK+ALGD RRLSVMGAAAA+GH+QIMRYLAFTQGCKVTEIRDMG+LWR+LEKCLY+GA+V V SR+ NS P S EVAA + DDD+ CIVCFERKVDCTLVPCGHHCCC TCAAQFEQCPVCRADV QKIR ISV
Sbjct: 429 SEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQGCKVTEIRDMGSLWRALEKCLYDGANV---VPETGGHRSRISN-NSGTP--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVAAPLGDDDNMCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 678
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE) HSP 1 Score: 231 bits (589), Expect = 4.800e-67 Identity = 131/265 (49.43%), Postives = 165/265 (62.26%), Query Frame = 1
Query: 10 PPLPRSEK---KVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIE-DDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
PP SE+ ++RVC C A E FR ALL G E AM+AYSTGCVNL PYT++H ELPVHCAAAGGN+ +L+WLVE+ CP+F D KKV + D+R L+V+GAAA G +Q MRYL QGC V+EI+ + TL +L+ CL+ A + + SR +AN P G + G GS S + AA E + D+ CIVCF+ +VDCTLVPCGHHCCC TCA++F CPVCR VT KI+TI V
Sbjct: 548 PPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYLVNQQGCSVSEIKHLPTLKIALDACLHGSA------KTRDAERSRY-RANGNDPDPLGSAG--------------GVCFGSRSTASLTTAAAEVETDNCCIVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTIPV 791
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI) HSP 1 Score: 181 bits (458), Expect = 6.500e-54 Identity = 102/167 (61.08%), Postives = 116/167 (69.46%), Query Frame = 1
Query: 310 MGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGP------RRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
MGAAAA+GH+QIMRYLAFTQGCKVTEIRDMG+LWR+LEKCLY+GA+V V SR+ +NS G G+ +GGAEV+A + DDD++CIVCFERKVDCTLVPCGHHCCC TCAAQFEQCPVCRADV QKIR ISV
Sbjct: 1 MGAAAASGHVQIMRYLAFTQGCKVTEIRDMGSLWRALEKCLYDGANV---VPETGGHRSRI--SNSSGTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATGGAEVSAPLGDDDNTCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 162
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE) HSP 1 Score: 186 bits (472), Expect = 4.720e-50 Identity = 121/337 (35.91%), Postives = 163/337 (48.37%), Query Frame = 1
Query: 25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRL----LQANSLGPRRSGGSSPTTGRG---------GSSGD---GYLGSTIGSGSGGAEVAAAIEDDDD-----------------------------------------------------------------SCIVCFERKVDCTLVPCGHHCCCFTCA-AQFEQCPVCRADVTQKIRTIS 789
+E++VRVC CY G++FR+ALL GS +GAM AY TGCVNLR P++ ELPVHCAAAGGN++++ WLVEDRCCP+F+D K + D SVM AAA +G +++MRYL+FTQ + + M WR L+ CL D + D + L + + P+ GGS G GSS D + +T S GG ++ +E D +CIVCF+R V+CT +PCGHHCCC CA + F CPVCR + +KI+TIS
Sbjct: 639 TERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQPSAASGM-GMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEXGYMGTSHPEPKERGGSRDAGGDDDGGKSCYPVGSSADRSPAWRSNTPSSAVGGGNGSSGVEGSDTFLDTSFVGMRAGAGXXXXTGDRDPFQAALEMSVAEAGYSIYELTSGKGXXXXXXXXXXXXXXXXXACIVCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTIS 972
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI) HSP 1 Score: 183 bits (465), Expect = 3.350e-49 Identity = 123/332 (37.05%), Postives = 164/332 (49.40%), Query Frame = 1
Query: 25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRG---------GSSGD-------GYLGSTIG--SGSGGAE---------------------------VAAAIE-------------------------------DDDDSCIVCFERKVDCTLVPCGHHCCCFTCA-AQFEQCPVCRADVTQKIRTIS 789
+E++VRVC CY G+ FR+ALL GS +GAM A+ TGCVNLR P++ ELPVHCAAAGGN++++ WL+EDRCCP+F+D K + D SVM AAA +G +++MRYL FTQ + + M WR L+ CL D + D + L + P+ GGS G GSS D GS +G +GSGG E + AA+E ++CIVCF+R V+CT VPCGHHCCC CA ++ CPVC + +KI+TIS
Sbjct: 569 TERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQPSAASGM-GMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEGTSHPEPKGRGGSRDAGGGDDGGKSCYPVGSSADRNPAWRSNAPGSAVGGGNGSGGVEGCDTFLAGMRAGAXXXXXXXXXXDRDPLQAALEMSVVEAGYSIYELTTGKDGSGXXXXXXXXXMKGKNACIVCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTIS 897
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI) HSP 1 Score: 165 bits (417), Expect = 8.300e-47 Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 1
Query: 25 SEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKK 276
SEKKVRVC+ CY AGE+FRKA LSGSEEGAMAA+STGCVNLRVPYTIYHNELPVHCAA+GGNLNILAWLV+DRCCPLFLDR KK
Sbjct: 105 SEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 188
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.810e-43 Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 22 RSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLS 474
+ E+K R+C C E FR ALL+G + A AAY GCVNLR PY+IY N LPVHCAA GG++ +LAWL+E++ CPLF D ++ +ALG+ R+ SVM AA GH IMRYL KV EI D LWR+L+K L E + G S
Sbjct: 83 KQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYLLHKHSVKVNEITDHKALWRALDKALRESSAQELGTSAAS 233
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK) HSP 1 Score: 138 bits (347), Expect = 8.200e-35 Identity = 93/264 (35.23%), Postives = 140/264 (53.03%), Query Frame = 1
Query: 28 EKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRL-SVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLL---QANSLGPRRSG-----GSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVCRADVTQKIRTISV 792
EKK RVC C A E+FR AL G G AAY+TG VNLR PYT++ E PVHCAAAGG+L +LAWLV++R + ++K+ L + S M AA G++++MR+L + C V +I ++ + + EK L + G P + L+ + P++S GS+P + S + + G G + +++ C++CFE ++ +VPCGH C C+ +F +CPVCR V Q I+T V
Sbjct: 129 EKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGITSCMSLAAVNGNLEMMRWLTQHE-CSVRDIVNLEHFYAATEKLLALPSTGTAGPLNSEPVAAALVDNARPPPFNPQQSVVVASVGSTPISAPSFES----ITPSAGIEQQGVTAVSGAGMEENECVICFENNINTVIVPCGHTAVCDGCSGKFTECPVCREPVQQVIKTFGV 387
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI) HSP 1 Score: 135 bits (340), Expect = 1.880e-32 Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1
Query: 34 KVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNELPVHCAAAGGNLNILAWLVEDRCCPLFLDRAKKVALGDMRRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPD 480
++RVC C A E FR ALL G E AM+AYSTGCVNL PYT++H ELPVHCAAAGGN+ +L+WLVE+ C +F D KKV + D+R L+V+GAAA V EI+ + TL +L+ CL+ A ++ S D
Sbjct: 557 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAAVNXXXXXXXXXXXXXXXXVLEIKHLPTLKIALDACLHGSAKTRVTLELQSGD 705
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Match: A0A448ZK47_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK47_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.970e-28 Identity = 81/256 (31.64%), Postives = 125/256 (48.83%), Query Frame = 1
Query: 22 RSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRVPYTIYHNE-----LPVHCAAAGGNLNILAWLVEDRCCPLFLDRA--KKVALGDM-----RRLSVMGAAAAAGHIQIMRYLAFTQGCKVTEIRDMGTLWRSLEKCLYEGADVPTGVQCLSPDMSRLLQANSLGPRRSGGSSPTTGRGGSSGDGYLGSTIGSGSGGAEVAAAIEDDDDSCIVCFERKVDCTLVPCGHHCCCFTCAAQFEQCPVC 753
+ E +V++C C F++ALL G E A+A Y TG +NLR P+ + ++ P+HCA GGNL+I+ WL+ED CP+ L R KK A D + S + A A H+ ++RYL +G V E +D+ R+LE L +P+ + D + + GG+S + G + + GS + +A+ D + CI+C + +DC + PCGH CC C+ CPVC
Sbjct: 515 KKESQVKICKSCNFLSGAFKRALLEGDYEEAVALYGTGNINLRTPFPQFSSKKEEVMYPIHCAVEGGNLDIVQWLMEDHFCPVKLIRTGGKKAANQDFPILTSKNRSALTIAMDALHVNVLRYLVVDKGVSVYESKDLKGSLRALEAVLNA---IPSSIGEYRSDGFNHRWDDEV---FDGGTSVASSLGADAT--FSGSEF-------DGSASKRTDAEKCILCCDNTIDCVITPCGHQICCLKCSKNLSTCPVC 755 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79628.15615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79628.15615.1 >prot_H-elongata_contig79628.15615.1 ID=prot_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp PPPPPLPRSEKKVRVCTICYRAGENFRKALLSGSEEGAMAAYSTGCVNLRback to top mRNA from alignment at H-elongata_contig79628:132..2848- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79628.15615.1 ID=mRNA_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2717bp|location=Sequence derived from alignment at H-elongata_contig79628:132..2848- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79628:132..2848- >mRNA_H-elongata_contig79628.15615.1 ID=mRNA_H-elongata_contig79628.15615.1|Name=mRNA_H-elongata_contig79628.15615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig79628:132..2848- (Himanthalia elongata Himel1 dioecious)back to top |