mRNA_H-elongata_contig7956.15608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7956.15608.1
Unique NamemRNA_H-elongata_contig7956.15608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.400e-133
Identity = 191/292 (65.41%), Postives = 228/292 (78.08%), Query Frame = 1
Query:  211 IDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT 1086
            ++CA +GT AHYEEFL+       R+  +ETGCPNH+NW +NP  A V  SVN S+PAYPM+  +  TTDLS+AA ++G+MRNGV++FSAWAVD V +YEDTAFYLEADTFD CGGHATP G YHYHGTAGCLQEQA    G    EHSP+LGW++DGFP+YGQLGP G+EMKMCG DGA +  CLD+CSGYEA + D DEF YRYY SCGFDESFFPFT NC+RGCCP G TC++++EAC  DA  GYT+DY+P AL +L + YDAEL+ G D   IGS  TVNCTLYLG+
Sbjct:   53 VECATDGTDAHYEEFLAGEGITMARWTATETGCPNHINWPLNPNAAGV-MSVNQSVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATI-DEDEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNTCSDRLEACGVDADVGYTDDYVPVALESLDEFYDAELVLGDDLELIGSRTTVNCTLYLGS 338          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 1.830e-132
Identity = 194/307 (63.19%), Postives = 235/307 (76.55%), Query Frame = 1
Query:  208 SIDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT---TFASGYDSTDS 1119
            S++CA NG+ AHY+EFL+      VR+  + TGCPNHVNW INP    V A +N+SIPAYPM+  +  TTDLS+AA ++G+MRNGV+++SAWA+D VE+YEDTAFYLEADT D CGGHATP G+YHYH TAGCLQEQA    G  A EHSP+LGW++DGFP+YGQLGP G+EMKMCG DGAD   CLD+CSGYEA + D D F YRYY SCGFDESFFPFT NCYRGCCP G+TC++++EAC D A+ GYT D++P A  +LH+ YDA LI G D   IG++ TVNCTLYLG      ASG  S D+
Sbjct:   67 SVECAYNGSDAHYDEFLAGEGLTMVRWTGTNTGCPNHVNWPINPNPGLVIA-INESIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASI-DEDTFTYRYYTSCGFDESFFPFTLNCYRGCCPTGVTCSDRIEACGDGALIGYTGDHVPVASESLHEPYDALLISGDDEDIIGTDLTVNCTLYLGAGSVQVASGVASDDT 367          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 8.770e-45
Identity = 91/220 (41.36%), Postives = 121/220 (55.00%), Query Frame = 1
Query:  448 IMRNGVALFSAWAVD-PVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDD--AVEGYTEDYIP----EALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT 1086
            +M NGVA++S++A D     Y   A  L  DT DLCGG  T DG YHYH   GCLQEQAM     TAD+HSP+LGWA+DGFP+YGQLGP+G+EM                                   L+CG    +FPFT NCYRGCC +   C+  V+ C ++  AV GYT+D+      E+L       D++LIEG D   + + D ++C+ Y+G+
Sbjct:    1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM-----------------------------------LTCGSGPEYFPFTINCYRGCCEETTRCHSTVQNCIEELGAVIGYTDDFTAGQSYESLYLDTPYMDSDLIEGDDVDQVATQDEMDCSFYMGS 185          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D8LCJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.500e-43
Identity = 116/280 (41.43%), Postives = 142/280 (50.71%), Query Frame = 1
Query:  280 VRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTA-GCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGTTFASGYDSTD 1116
            VR+  ++TGCPNHV+W INP  A V +  N SI AYPMM  +N T DLS+A+ ++ +MRNGV+         V+DY DTAFYLEAD+FD CGGHATP+G YHYHGTA  C   +    A T          WA                   C E           C+      S          +S     +   +  N           C+EKV+AC DD V GYT D +P   A+L + YDA LIEG DT  IGSN TVNCTLYLG    SG D T+
Sbjct:   48 VRWAVTDTGCPNHVSWDINPNFAGV-SDRNASILAYPMMSADNGTKDLSSASGTICMMRNGVS--------HVQDYFDTAFYLEADSFDPCGGHATPNGFYHYHGTAVACRNRRRRSRASTRRC-------WA----------------GHTCAEPKGRTTRSASTCAPATRPSSTR--------MSTPTATTRDRYNHN----------RCSEKVDACGDDPVAGYTADLVPAETASLDEMYDALLIEGLDTDIIGSNFTVNCTLYLG----SGGDGTE 273          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A7S1AW44_NOCSC (Hypothetical protein (Fragment) n=3 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AW44_NOCSC)

HSP 1 Score: 161 bits (407), Expect = 3.810e-39
Identity = 101/281 (35.94%), Postives = 139/281 (49.47%), Query Frame = 1
Query:  211 IDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGN-------NATTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATPDG--TYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMC----GEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCN-EKVEACDDDAVEGYT 960
            + C  +G    Y    SES S TVR   +   CPNH  + +NP  A V  S    +PA+P   G        +A+ DLS    +VG++ +G  LFS +       V  Y  +A Y EA+TFD CGGHA+     +YHYHG   CL    + + G     HSP +GWA DGFP+YG  GP+G+ M+ C    G  G D   C D C GY +     D F YRYYL   + +              ++ P +  C+RGCCP G++C+   ++ C  D  +GYT
Sbjct:   51 VSCTDDGNDYEY----SESVSGTVRT-ITTNHCPNHPTYNLNPNYA-VGESTTYRVPAFPSFVGTTTASGTASASIDLSEQGGAVGVLFSGGKLFSPYGGAGYGQVSGYSTSAIYNEANTFDQCGGHASSSTQPSYHYHGPPPCL----LRQLGQADASHSPQVGWALDGFPIYGPRGPSGVMMQTCTVTDGTYGVDV--CTDDCGGYYSADDSIDNFVYRYYLMGNYGDGTSCDVPGCPSPTSAYHPSSPLCFRGCCPSGVSCSLSAIDTCTSDDSDGYT 319          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A7S1JAX6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAX6_9EUGL)

HSP 1 Score: 152 bits (385), Expect = 3.700e-37
Identity = 105/289 (36.33%), Postives = 145/289 (50.17%), Query Frame = 1
Query:  217 CAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATPD--GTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICS----GYEAELSDTDEFKYRYY--------LSCG---------FDESFFPFTTNCYRGCCPDGITCNEK-VEACDDDAVEGYTEDYIPEALATLHDS 1002
            CA +G+   Y E ++ S         + T CPNH    INP +  V A    ++PA P  +   AT+DL++ A  +G+M +G  L+S +A         +  +A Y E DTFD+CGGH++     +YHYH    CL    + + G +A  HSP +GWA DGFPVYG  GP+G  MK C + G    +  D+C+    GY A+L  TD F +RYY        LSC           D + +P T   Y GCCP G++C+   V  C   AV G T  Y   A + LH S
Sbjct:   36 CATDGSDYSYSEVITGSSRV-----ITTTLCPNHPWKNINPGQP-VKAQTVYTVPANPQ-YDTAATSDLTSQAGLIGVMFSGAMLYSPYAGPATGAATSFTKSAPYGEGDTFDMCGGHSSSKTVASYHYHVPPSCL----LQQLGASATAHSPQVGWAADGFPVYGSRGPSGTLMKSCTQTGG--TYGTDVCTNEFGGYLADLPGTDNFTFRYYMQGSSNDGLSCTNPLSPAPATTDSTSYPQTPTKYYGCCPSGVSCSGGFVNVCSGTAVAGTTSSYSA-AASVLHAS 310          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.730e-36
Identity = 91/258 (35.27%), Postives = 127/258 (49.22%), Query Frame = 1
Query:  217 CAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPT------EAQVTA-------SVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAV----DPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEA--GTT-ADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDES--------------FFPFTTNCYRG 888
            CA +G+SA Y E ++     +VR   S TGCPNH ++           E + T        S++  +PA P +  +    +L  +  ++    NGV  +S         P    +      E  +FD C GH+T  G YHYH    CL  QA  +A  GTT A+ HSP +GWA DGFP+YG LGP G+E++ CG  GAD  +C D C GYE EL   D +KYRYY++    +               +FP+T  C+RG
Sbjct:   39 CAADGSSASYTETITTQSGVSVRKIVS-TGCPNHESYCTGKPGNSCGDEGKQTTLVEGKEQSLSVEVPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIRNCGASGADSTYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 295          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A813JEL4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JEL4_POLGL)

HSP 1 Score: 151 bits (382), Expect = 1.150e-35
Identity = 95/279 (34.05%), Postives = 140/279 (50.18%), Query Frame = 1
Query:  217 CAQNGTSAHYEEFLSES-ESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNA-------TTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATP--DGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMC----GEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYT 960
            CA++G+   Y E +S S ++ TV       GCPNH  + ++P++  +   +  +IP YP   G++          DLS    S+GI  NG  LFS +A      V++Y  +A Y +  TFD  G H+    +G Y       CL    + + G T+  HSP +GWA DGFP+YG  GPNG++M+ C    G  G+D   C D+C GY       D + YRYY+   +D+              +++P T  C+RGCCP G+TC+  V AC      GY+
Sbjct:   22 CAKDGSDYFYTESVSSSPKTRTV----VSNGCPNHPWYQLSPSKPSL-QKMTYTIPLYPQFLGSSTYSTSGYPAVDLSQTVDSIGIFFNGGMLFSPYAGPTYGQVKNYATSATYAKGSTFDQRGCHSNDLSNGLYGCSVPPHCL----LNQLGQTSGSHSPQIGWAHDGFPIYGPRGPNGVQMQTCEVTGGTYGSDV--CTDVCGGYYLNDGTIDNYYYRYYIQGTYDDGTSCSNPGCTSPGANYYPNTPVCFRGCCPSGVTCSSVVPACSGSYSNGYS 289          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A0G4G8Z0_9ALVE (YHYH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G8Z0_9ALVE)

HSP 1 Score: 147 bits (370), Expect = 4.520e-35
Identity = 90/254 (35.43%), Postives = 127/254 (50.00%), Query Frame = 1
Query:  214 DCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAV---DPVEDYEDTAFYLEADTFDLCGGHATPDG--TYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYL---------SCGFDES------FFPFTTNCYRGCCPDGITCN 915
            +C  +GT   Y E ++ +   T+ +    T CPNH    +N T   V  +V+ S+P YP  + ++AT   +T+   VG++ +G  +FS ++      V  +  +A  LE  TFDLCG HA+ +   +YH H    CL  Q  M       +HSP +GWA DGFP+YG  GP+G  M+ C   G     C D C GY A LS  D + YRYYL         +CG  +        +P T  C  GCCP G TC+
Sbjct:   27 ECIGDGTDYDYIEEITTTTERTMIF----TNCPNHPYRNLN-TYWPVKGNVSFSVPLYPE-YESSATVSFTTSVGPVGVLFSGAYVFSPYSEIVQTEVTGFSSSAVQLEKGTFDLCGCHASSNEAPSYHCHHPPDCLLRQMNMNE----SDHSPQIGWAADGFPIYGPRGPDGTIMRTCSSQGLSSGVCTDSCGGYAATLSTVDTYTYRYYLQGNAISGVGTCGSPDGTVSGSEHYPQTPPCLMGCCPSGATCS 270          
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A813J4D8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J4D8_POLGL)

HSP 1 Score: 147 bits (370), Expect = 5.710e-35
Identity = 93/278 (33.45%), Postives = 139/278 (50.00%), Query Frame = 1
Query:  217 CAQNGTSAHYEEFLSES-ESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNA-------TTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATP--DGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMK---MCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYT 960
            CA++G+   Y E +S S ++ TV       GCPNH  + ++P++  +   +  +IP YP   G++          DLS    S+GI  NG  LFS +A      V++Y  +A Y +  TFD  G H+    +G Y       CL    + + G T+  HSP +GWA DGFP+YG  GPNG++M+   + G     +V C D+C GY       D + YRYY+   +D+              +++P T  C+RGCCP G+TC+  V AC      GY+
Sbjct:   22 CAKDGSDYFYTESVSSSPKTRTV----VSNGCPNHPWYQLSPSKPSL-QKMTYTIPLYPQFLGSSTYSTSGYPAVDLSQTVDSIGIFFNGGMLFSPYAGPTYGQVKNYATSATYAKGSTFDQRGCHSNDLSNGLYGCSVPPHCL----LNQLGQTSGSHSPQIGWAHDGFPIYGPRGPNGVQMQTREVTGGTYGSDV-CTDVCGGYYLNDGTIDNYYYRYYIQGTYDDGTSCSNPGCTSPGGNYYPNTPVCFRGCCPSGVTCSSVVPACSGSYSNGYS 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE1.400e-13365.41YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI1.830e-13263.19YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ6_ECTSI8.770e-4541.36YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCJ4_ECTSI1.500e-4341.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1AW44_NOCSC3.810e-3935.94Hypothetical protein (Fragment) n=3 Tax=Noctiluca ... [more]
A0A7S1JAX6_9EUGL3.700e-3736.33Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J2WVX8_9STRA1.730e-3635.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A813JEL4_POLGL1.150e-3534.05Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A0G4G8Z0_9ALVE4.520e-3535.43YHYH domain-containing protein n=1 Tax=Chromera ve... [more]
A0A813J4D8_POLGL5.710e-3533.45Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7956contigH-elongata_contig7956:4056..8602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.2
Seed ortholog evalue3.5e-113
Seed eggNOG ortholog2880.D7FUL4
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons8
Model size2173
Cds size1236
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7956.15608.1prot_H-elongata_contig7956.15608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7956 4074..7683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.0998714-UTR-H-elongata_contig7956:4055..40731622931200.0998714-UTR-H-elongata_contig7956:4055..4073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7956 4056..4073 +
1691679738.6579149-UTR-H-elongata_contig7956:4055..40731691679738.6579149-UTR-H-elongata_contig7956:4055..4073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7956 4056..4073 +
1622931200.263575-UTR-H-elongata_contig7956:7683..86021622931200.263575-UTR-H-elongata_contig7956:7683..8602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7956 7684..8602 +
1691679738.761397-UTR-H-elongata_contig7956:7683..86021691679738.761397-UTR-H-elongata_contig7956:7683..8602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7956 7684..8602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.1206374-CDS-H-elongata_contig7956:4073..43151622931200.1206374-CDS-H-elongata_contig7956:4073..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 4074..4315 +
1691679738.672167-CDS-H-elongata_contig7956:4073..43151691679738.672167-CDS-H-elongata_contig7956:4073..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 4074..4315 +
1622931200.1331637-CDS-H-elongata_contig7956:4554..46451622931200.1331637-CDS-H-elongata_contig7956:4554..4645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 4555..4645 +
1691679738.6827753-CDS-H-elongata_contig7956:4554..46451691679738.6827753-CDS-H-elongata_contig7956:4554..4645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 4555..4645 +
1622931200.152262-CDS-H-elongata_contig7956:5120..52451622931200.152262-CDS-H-elongata_contig7956:5120..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 5121..5245 +
1691679738.6922987-CDS-H-elongata_contig7956:5120..52451691679738.6922987-CDS-H-elongata_contig7956:5120..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 5121..5245 +
1622931200.172382-CDS-H-elongata_contig7956:5864..60661622931200.172382-CDS-H-elongata_contig7956:5864..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 5865..6066 +
1691679738.7053616-CDS-H-elongata_contig7956:5864..60661691679738.7053616-CDS-H-elongata_contig7956:5864..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 5865..6066 +
1622931200.1967225-CDS-H-elongata_contig7956:6446..64971622931200.1967225-CDS-H-elongata_contig7956:6446..6497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 6447..6497 +
1691679738.7183425-CDS-H-elongata_contig7956:6446..64971691679738.7183425-CDS-H-elongata_contig7956:6446..6497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 6447..6497 +
1622931200.2121053-CDS-H-elongata_contig7956:6822..69271622931200.2121053-CDS-H-elongata_contig7956:6822..6927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 6823..6927 +
1691679738.7310436-CDS-H-elongata_contig7956:6822..69271691679738.7310436-CDS-H-elongata_contig7956:6822..6927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 6823..6927 +
1622931200.2257721-CDS-H-elongata_contig7956:7049..71231622931200.2257721-CDS-H-elongata_contig7956:7049..7123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 7050..7123 +
1691679738.741345-CDS-H-elongata_contig7956:7049..71231691679738.741345-CDS-H-elongata_contig7956:7049..7123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 7050..7123 +
1622931200.246355-CDS-H-elongata_contig7956:7337..76831622931200.246355-CDS-H-elongata_contig7956:7337..7683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 7338..7683 +
1691679738.7522964-CDS-H-elongata_contig7956:7337..76831691679738.7522964-CDS-H-elongata_contig7956:7337..7683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7956 7338..7683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7956.15608.1

>prot_H-elongata_contig7956.15608.1 ID=prot_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=412bp
MKATSTSVRKLGAFAFIGIALCQRANGQPGAGMGTSDDGATNDIPPPEDG
SMGGAVSFDDDGTSIDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNH
VNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVA
LFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQ
AMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCL
DICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNE
KVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNC
TLYLGTTFASGYDSTDSSSGYDSTDSSSESDTTDESPASLLSPRMFGVIA
ASLIAGVALAL*
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mRNA from alignment at H-elongata_contig7956:4056..8602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7956.15608.1 ID=mRNA_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4547bp|location=Sequence derived from alignment at H-elongata_contig7956:4056..8602+ (Himanthalia elongata Himel1 dioecious)
GTGAAGGGACGATTCAGGATGAAGGCAACATCAACTTCGGTTCGTAAGCT AGGCGCCTTCGCTTTCATTGGCATTGCTCTATGCCAGAGGGCGAACGGGC AACCTGGCGCGGGGATGGGAACATCAGACGATGGAGCGACTAATGATATA CCACCACCAGAAGATGGATCTATGGGGGGGGCTGTGTCGTTTGACGATGA TGGGACTTCGATCGACTGCGCCCAAAACGGAACTAGCGCCCACTACGAGG AATTTCTCAGGTAGGCTGGAGAAAATCTCAAATATAGACTATGTGGTAAA GTTCTACGCTGTAGTTTTTCATCTGGAGCAAGGTGAAATATGTGGAATAC CAAAGCGTAATAACACTAGAGGCGGTACAAGTTCTCGTTACACATTGCAA ATACCATAACTTATTGTTGCCCTCGAGGCCATGAAACCTTTGTTCGGGTT CCTGCACGCCATATTGTTGAAGTAACCCTTTTGCTTTTTCACCGTGCAGC GAGTCCGAGTCCGACACGGTCCGCTACGGATTTTCGGAAACTGGCTGCCC CAACCACGTCAATTGGGCCATCAACCCTACCGAAGCACAGGTATAGGTTT AAATTAAAATTGAGACCTGAAGCATTATCATCTTCTAACGCAAGGCGCCC TTTTGAGACGTTTTTTTGCATCCTGGGCAGTATCGACCCCTACCCGCAAC GCATGAGGGTGGATTAGTCGGATTCGACAGGAGGCCATATACCCTTTCAG CCGACTCACATTCTAAAGGTTAACGTTACTCTCGCCAATTTCCACCACCA TTAACAACGTGCATCTCAGCGTGATGTCATGCCCGAACTTTGTCTAGTAC GCCATGCAGGGAGAGATGCTCCCATCTTTAATTGCTTTACGGTCGTTAGC ACTAAGAGCCGCGTTCTCGCTGCTGATCTCATTATAGGCTGAGCAATGAA AAAGGGAAACAGCTCCGGATAGAACTCTTGCATGGGAGCCATCAGCAAGG CTCTTTACCAGCTGCCGTTCTTGCCCTAGAAGACTTACTATCGCAATTTT CTATCTGTTTCACAGGTCACGGCATCGGTAAATGATTCTATTCCGGCGTA TCCGATGATGTTTGGGAACAACGCGACAACAGATCTGAGCACCGCCGCCT TGTCTGTTGGAATCATGCGCAACGGCGTGGCCCTCTTCAGGTACGTTAAA ATAATGTTTTGACGATATTTTTGTGACCCCGGTCTGCAAAGGGATCTGTA TTTCTTCTGTCCGCTTGTTTGTTACTTCCTGAAGCTGCATGAGAATCAAT CGACCTCTCGCTAAACAGTAAGATAAGCTCGGACACCAGTTCTAACGATA CGCTGAGCTTAAAGGTAGTTCAAGTTTATGTGCGCAGCTATAGCACCACG AATTGCAGCGAGGTAGTCTGCCAAGCGAGGATACAGGCATGAAGTACCTT GTCATTGGTTAGGGATAATGCGCCAGTTGTTGTATTCAGTTATTTTTGCT TTTGCTGTAATATAAGTTATAGGAGCAATAACTAAGCGAGATTTGCTTAA GTCACAATAATACTAAATTACCCAAAAACTGCGTAAACGCATAACCACAT CGCACGAAGAGCCGGGCATGCCGTATTTATAATGAGGGAAGTACTGAGTA CAACGCGTAAAAATCGCTTAGAGGCATATCTGGATTTATTGCACCTCCTG AGTAGACCACTTCCGACGACACATTTTTATCAGAACCACCTTGAACAATA AAGGGGTGCAACCCTGAACTGTACGCTCAACTTGCCCCGTCGCTGTAATC CACGCTCAGCGCATGGGCGGTAGACCCCGTGGAGGACTACGAAGACACGG CCTTTTATCTCGAAGCTGACACGTTCGACCTTTGCGGTGGTCACGCCACC CCCGATGGGACCTACCACTACCACGGCACGGCCGGTTGTCTTCAGGAACA GGCCATGATGGAGGCTGGAACTACCGCAGACGAGCACTCGCCGATTCTAG GATGGGCTTTTGTGAGTAGAGTTGTAAATATATTTCTATGAGGCGGCCAG AGTATGACCCATAATACACGGTCGTGCTGATATCTTGCAGCATTACCGGA AAACGTATCTAACTATGCTGCGAAAACATATCCAAACATGGTTTAGCACA AGGTCAAACCTATCATGTAAATGACTGAACCGCCGACACTATGCACGGCA GAAGAAATACGCTTCGCTCAGGGAGACGTCGTCAGATACAATCGAAACTA TGCCCAATCAGGCAAACGTCGGCATTAACATTACGGCCTCTGGACCCATG TTTTTATCTGAGCACTTTCCATAAACTTTGCTGATCAAACACATGATGAC ATTGTGTCCTTACTGCCTCGTTTACCGCCAAACATGCGCAGGACGGGTTC CCTGTGTATGGACAGCTCGGCCCTAACGGGATAGAGATGAAGGTGAACTT CTGTTGTTTACTAAATACTACTGTTGTTTGTCTACACCCTATGATAGGGT GGTGACCTGAAACCCACGAATTAAAACTAGAGATCTAACGGTGGGTAGCT TCCGGCAACAAAGCTCCACGATTTAAGTACCTTTAGTAGCACGTAGCAGT TGAAATATTTGATATTTCCCTATTAAGTGCCCCGATACAGTACCGATAGC TGCTGTACAAGTAACCGTGCGACCATTTCACATTAAATCCCATGCTTAGC TTCAGGGATCTGATTAGGCAGCCTATAACTTTTCAATGACCCATTATTGT ATTTTTCTCCGCGACAGATGTGCGGCGAGGATGGAGCAGACGAGGTTCAT TGCCTTGACATATGCTCTGGCTACGAGGCGGAGCTGTCCGACACTGACGA GTTCAAGTACCGCTACTACCTGGTGAGAAGATTCGTGGAATTGGAATACT ACCGCAGCTGAACGATTATTGTGTAAACACCCCCTTGGACGCTTAATTTG ACCCTGTCAACCCTAATTCCCTCTTTTGGCTGTCACACGCGCAGTCTTGT GGCTTCGACGAGTCATTCTTCCCCTTCACGACGAATTGCTATCGCGGATG CTGCCCGGACGGCATAACGTAAGTCATCATTGCACATTCGACGAATATAT AGTCTGAGATACTGCCCACTCTGGTCATTTACTCTATTATGCCGGTTAAA GGACATATCCAAAGCGTAAACCTCCGAGCTGCCAGAGTCTTGACAACGAT GGCCGCGAACATTACCACGATACTTTTACCACATCTATGATGTTGTGCCT GAACGGCGTTGATTCATACGCACTGGAATCAGGTGCAACGAAAAGGTCGA GGCGTGTGATGACGACGCAGTAGAGGGCTACACCGAGGACTACATTCCAG AGGCTCTGGCTACGCTACACGATTCCTACGACGCGGAGCTCATTGAAGGT GCTGATACGATACACATTGGTAGTAACGACACTGTCAACTGCACGCTCTA CTTGGGGACCACGTTTGCAAGCGGATATGATTCGACTGATTCTTCAAGCG GATATGATTCGACTGATTCTTCAAGCGAATCTGATACAACCGACGAGTCG CCAGCTTCTCTCTTATCTCCGAGGATGTTTGGTGTCATTGCTGCTAGCTT GATCGCTGGTGTGGCTTTGGCCTTGTAACCTGCGCCGATTTAAGCGCTGG TCACTGGAGCTATGCTGTCAATAAAGGTTATAGGTTTGTTCGATTTGACG GAACTTGCCTTCAGCTCCTATTCGTAAGTAATATCAGGTATTGTTCGAGA TTGGAAAACTTGAACTGGAAGACTTCAGCCTCGTATCGATAGCTCAATGT TCATCGTGGGCGTACCGATAAGCAAGAAGGCTTATATAGTTTTGAAGATT GGATATTACTCTCGTATCTGGGGATTTTTCTCTTGGAAGCTCTAAGTTGA CCGGTCATTCGACATCACATATTTGTGAAGGACATATGGTGAAGTGAATA TATTACGGCTCGATCGTGCATTCCCGCCACCCCACTCCCGTCGTAGAGGA GTAGGGGTGGAGCCTCAATGACCTTTGATCGTTGTTCATCCAGTAACACA TCACTTTCCTTCGTGTGGTGTTTTGTATTGGGTATATACCTTGTATATCT TATGCTGATTCTCCTTTCGTCCTGGTGTCTCTTCTCTTTCGGCTCCAGTT GCGTTCTCTCACCCCGTCTCTGGTTGTGATCTACGGTTCCTTTTTATTTT CCGTTTTTTCTTTCGGCTATTGTGTTTTTTTTTCGTTGGCTCTCACTTCG CGCGGTACAATTTTATGCCGGACTGCATCTAATTTGCGCAGTGATCGTAC ATCCAGCGTGTGGGTGCGTGTGGCCATTAGGTTTAGTAGGATATAGATCA AACGGATATGGTTTCCAATCCTAGTCGTGATCAGCTAGAATAATTTTTCC CTGCGTCCGTTCGCACCTGAGATTTTGGTCTCGCGAGATAGCTTCACTTC TTCAAAGTGGTAATACCGTAGTTTCAGATGTTCTATAGAAAGAACAGTAC ATCATTATTATATTTCGTATGTGCGCCAGTTATTGCTGGCGGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig7956:4056..8602+

>mRNA_H-elongata_contig7956.15608.1 ID=mRNA_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2472bp|location=Sequence derived from alignment at H-elongata_contig7956:4056..8602+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCAACATCAACTTCGGTTCGTAAGCTAGGCGCCTTCGCTTTCAT
TGGCATTGCTCTATGCCAGAGGGCGAACGGGCAACCTGGCGCGGGGATGG
GAACATCAGACGATGGAGCGACTAATGATATACCACCACCAGAAGATGGA
TCTATGGGGGGGGCTGTGTCGTTTGACGATGATGGGACTTCGATCGACTG
CGCCCAAAACGGAACTAGCGCCCACTACGAGGAATTTCTCAGATGAAGGC
AACATCAACTTCGGTTCGTAAGCTAGGCGCCTTCGCTTTCATTGGCATTG
CTCTATGCCAGAGGGCGAACGGGCAACCTGGCGCGGGGATGGGAACATCA
GACGATGGAGCGACTAATGATATACCACCACCAGAAGATGGATCTATGGG
GGGGGCTGTGTCGTTTGACGATGATGGGACTTCGATCGACTGCGCCCAAA
ACGGAACTAGCGCCCACTACGAGGAATTTCTCAGCGAGTCCGAGTCCGAC
ACGGTCCGCTACGGATTTTCGGAAACTGGCTGCCCCAACCACGTCAATTG
GGCCATCAACCCTACCGAAGCACAGCGAGTCCGAGTCCGACACGGTCCGC
TACGGATTTTCGGAAACTGGCTGCCCCAACCACGTCAATTGGGCCATCAA
CCCTACCGAAGCACAGGTCACGGCATCGGTAAATGATTCTATTCCGGCGT
ATCCGATGATGTTTGGGAACAACGCGACAACAGATCTGAGCACCGCCGCC
TTGTCTGTTGGAATCATGCGCAACGGCGTGGCCCTCTTCAGGTCACGGCA
TCGGTAAATGATTCTATTCCGGCGTATCCGATGATGTTTGGGAACAACGC
GACAACAGATCTGAGCACCGCCGCCTTGTCTGTTGGAATCATGCGCAACG
GCGTGGCCCTCTTCAGCGCATGGGCGGTAGACCCCGTGGAGGACTACGAA
GACACGGCCTTTTATCTCGAAGCTGACACGTTCGACCTTTGCGGTGGTCA
CGCCACCCCCGATGGGACCTACCACTACCACGGCACGGCCGGTTGTCTTC
AGGAACAGGCCATGATGGAGGCTGGAACTACCGCAGACGAGCACTCGCCG
ATTCTAGGATGGGCTTTTCGCATGGGCGGTAGACCCCGTGGAGGACTACG
AAGACACGGCCTTTTATCTCGAAGCTGACACGTTCGACCTTTGCGGTGGT
CACGCCACCCCCGATGGGACCTACCACTACCACGGCACGGCCGGTTGTCT
TCAGGAACAGGCCATGATGGAGGCTGGAACTACCGCAGACGAGCACTCGC
CGATTCTAGGATGGGCTTTTGACGGGTTCCCTGTGTATGGACAGCTCGGC
CCTAACGGGATAGAGATGAAGGACGGGTTCCCTGTGTATGGACAGCTCGG
CCCTAACGGGATAGAGATGAAGATGTGCGGCGAGGATGGAGCAGACGAGG
TTCATTGCCTTGACATATGCTCTGGCTACGAGGCGGAGCTGTCCGACACT
GACGAGTTCAAGTACCGCTACTACCTGATGTGCGGCGAGGATGGAGCAGA
CGAGGTTCATTGCCTTGACATATGCTCTGGCTACGAGGCGGAGCTGTCCG
ACACTGACGAGTTCAAGTACCGCTACTACCTGTCTTGTGGCTTCGACGAG
TCATTCTTCCCCTTCACGACGAATTGCTATCGCGGATGCTGCCCGGACGG
CATAACTCTTGTGGCTTCGACGAGTCATTCTTCCCCTTCACGACGAATTG
CTATCGCGGATGCTGCCCGGACGGCATAACGTGCAACGAAAAGGTCGAGG
CGTGTGATGACGACGCAGTAGAGGGCTACACCGAGGACTACATTCCAGAG
GCTCTGGCTACGCTACACGATTCCTACGACGCGGAGCTCATTGAAGGTGC
TGATACGATACACATTGGTAGTAACGACACTGTCAACTGCACGCTCTACT
TGGGGACCACGTTTGCAAGCGGATATGATTCGACTGATTCTTCAAGCGGA
TATGATTCGACTGATTCTTCAAGCGAATCTGATACAACCGACGAGTCGCC
AGCTTCTCTCTTATCTCCGAGGATGTTTGGTGTCATTGCTGCTAGCTTGA
TCGCTGGTGTGGCTTTGGCCTTGTAAGTGCAACGAAAAGGTCGAGGCGTG
TGATGACGACGCAGTAGAGGGCTACACCGAGGACTACATTCCAGAGGCTC
TGGCTACGCTACACGATTCCTACGACGCGGAGCTCATTGAAGGTGCTGAT
ACGATACACATTGGTAGTAACGACACTGTCAACTGCACGCTCTACTTGGG
GACCACGTTTGCAAGCGGATATGATTCGACTGATTCTTCAAGCGGATATG
ATTCGACTGATTCTTCAAGCGAATCTGATACAACCGACGAGTCGCCAGCT
TCTCTCTTATCTCCGAGGATGTTTGGTGTCATTGCTGCTAGCTTGATCGC
TGGTGTGGCTTTGGCCTTGTAA
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