mRNA_H-elongata_contig7950.15605.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7950.15605.1
Unique NamemRNA_H-elongata_contig7950.15605.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7950.15605.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-18
Identity = 66/181 (36.46%), Postives = 76/181 (41.99%), Query Frame = 1 
Query:    7 SKREIALLHERRAAQLIEEGCSGFDEAQEHLDNALSIWSGYKQSDLMARTWCLKGCCSGKAGDYAKASASFKRAQHLAERADDAMLAVTAMINRAICEIQIGDAKGAATSSRRAFVKAQTEGGSQMTFLAHVIRAVSYQMAGNFLAACNEHEAAAMLAAVADNFNPEPRLALAMDINQGIR 549
            S REIA LH+  AA  +  G   F++AQEHLD+AL  W+GY +  L AR WCLK  CSG+AGD                                                                     IRA+SYQM GNFLAACNEHEAAA LA         P  AL M+ N GIR
Sbjct:   28 SGREIAHLHQSWAAAFLARG--SFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGIR 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7950.15605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS1_ECTSI1.150e-1836.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7950contigH-elongata_contig7950:3982..5369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Exons3
Model size552
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7950.15605.1prot_H-elongata_contig7950.15605.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7950 3982..5369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.4951093-CDS-H-elongata_contig7950:3981..41261622931199.4951093-CDS-H-elongata_contig7950:3981..4126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 3982..4126 -
1691679738.3612611-CDS-H-elongata_contig7950:3981..41261691679738.3612611-CDS-H-elongata_contig7950:3981..4126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 3982..4126 -
1622931199.519281-CDS-H-elongata_contig7950:4541..48581622931199.519281-CDS-H-elongata_contig7950:4541..4858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 4542..4858 -
1691679738.3700356-CDS-H-elongata_contig7950:4541..48581691679738.3700356-CDS-H-elongata_contig7950:4541..4858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 4542..4858 -
1622931199.5360239-CDS-H-elongata_contig7950:5279..53691622931199.5360239-CDS-H-elongata_contig7950:5279..5369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 5280..5369 -
1691679738.379409-CDS-H-elongata_contig7950:5279..53691691679738.379409-CDS-H-elongata_contig7950:5279..5369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 5280..5369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7950.15605.1

>prot_H-elongata_contig7950.15605.1 ID=prot_H-elongata_contig7950.15605.1|Name=mRNA_H-elongata_contig7950.15605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
MASKREIALLHERRAAQLIEEGCSGFDEAQEHLDNALSIWSGYKQSDLMA
RTWCLKGCCSGKAGDYAKASASFKRAQHLAERADDAMLAVTAMINRAICE
IQIGDAKGAATSSRRAFVKAQTEGGSQMTFLAHVIRAVSYQMAGNFLAAC
NEHEAAAMLAAVADNFNPEPRLALAMDINQGIR*
back to top

mRNA from alignment at H-elongata_contig7950:3982..5369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7950.15605.1 ID=mRNA_H-elongata_contig7950.15605.1|Name=mRNA_H-elongata_contig7950.15605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1388bp|location=Sequence derived from alignment at H-elongata_contig7950:3982..5369- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGCAAGCGAGAAATTGCTCTCCTGCATGAGAGGCGTGCCGCCCA
GTTGATCGAGGAAGGGTGCTCTGGCTTTGATGAGGCTCAGGTAGCTAAAA
CGTCGTAGCCATAGCACTGCGTGACGCTTAGTACACGTCCATTCGATAAT
GTTCTTCGTATTCCTGGATCAGATCCTGCAAACTCCTCGTCATATTATCA
CTCTATCGGATACAGAAAAGTCAATGATTACCTCTCTCGTCGAAGTAGTT
TGGGTGTCCCTATCTTACACTACAGTAATGCATACAGTATATACCACGGC
TAAGCAGGATGCCGATCCGTATGGCGTGGCTACAAACAGTCCGACTTAAT
AGATCTTGCAAACTCCTCGTCATATTATCACTCTATCGGTTACAGAGTAG
CTATTAATAGTGATAACCTCTCTCGTCGCAGTAGTTTGGATATCTCCACC
TAACACATGTAGTGCATATAGTAGATCCCACGACGAATGCACGATGTTGA
TCCGATATCAGGAGCACCTTGACAACGCTCTCAGTATATGGAGTGGCTAC
AAACAGTCCGACTTAATGGCGAGAACGTGGTGCTTAAAGGGATGTTGCAG
TGGAAAGGCCGGTGATTACGCTAAAGCTTCTGCCAGCTTCAAGCGCGCAC
AACATTTGGCCGAAAGAGCCGACGACGCAATGTTGGCGGTAACCGCCATG
ATCAACCGTGCAATCTGCGAAATTCAAATCGGAGACGCCAAAGGGGCGGC
GACTTCGTCGCGTAGAGCGTTCGTCAAGGCACAGACCGAGGGTGGGTCAC
AGATGACCTTCCTTGCCCACGTTATCAGGTGTGTAAGATATAATAGAGTG
CCAAAGGCATCGAGTGGATAAACTGCAAACTTCAAGTACCATCAGCGATG
CCGATGAGAACTATCTTTCAATTTGTCTTAGGACGGGGTTTGGAGAGCAG
GGGGGTGTTTATCGTGTTTTCTTGTGTTTTTAGAAGCCGTTTTTTACTGT
CGTTAGGTATATCTTTAGCAAACGAACGTTGTAGGAAAGAGGTTCAGTCA
GCGCGTAGAGACGGGTAAACGTTCCAATTATCATTCATGTTTGCATTTGG
TAGGTGACTAGAGCTACTATAGATCTAGAGCTGCTGCAATACATTTTCCA
ACGTTCGATCGTATCTTATAGCGACACAGCAGCTGCCTACCCCACTCCCT
GATACCGGTGCGCGCGCCTCGCTAACCCTTGTGCGCTGTGCAGGGCTGTG
AGCTACCAGATGGCGGGCAACTTCCTCGCTGCATGCAATGAGCACGAGGC
CGCTGCGATGCTCGCAGCCGTGGCAGATAATTTCAATCCAGAACCACGAC
TCGCTCTCGCCATGGACATCAACCAGGGGATCAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7950:3982..5369-

>mRNA_H-elongata_contig7950.15605.1 ID=mRNA_H-elongata_contig7950.15605.1|Name=mRNA_H-elongata_contig7950.15605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig7950:3982..5369- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGCAAGCGAGAAATTGCTCTCCTGCATGAGAGGCGTGCCGCCCA
GTTGATCGAGGAAGGGTGCTCTGGCTTTGATGAGGCTCAGATGGCGAGCA
AGCGAGAAATTGCTCTCCTGCATGAGAGGCGTGCCGCCCAGTTGATCGAG
GAAGGGTGCTCTGGCTTTGATGAGGCTCAGGAGCACCTTGACAACGCTCT
CAGTATATGGAGTGGCTACAAACAGTCCGACTTAATGGCGAGAACGTGGT
GCTTAAAGGGATGTTGCAGTGGAAAGGCCGGTGATTACGCTAAAGCTTCT
GCCAGCTTCAAGCGCGCACAACATTTGGCCGAAAGAGCCGACGACGCAAT
GTTGGCGGTAACCGCCATGATCAACCGTGCAATCTGCGAAATTCAAATCG
GAGACGCCAAAGGGGCGGCGACTTCGTCGCGTAGAGCGTTCGTCAAGGCA
CAGACCGAGGGTGGGTCACAGATGACCTTCCTTGCCCACGTTATCAGGAG
CACCTTGACAACGCTCTCAGTATATGGAGTGGCTACAAACAGTCCGACTT
AATGGCGAGAACGTGGTGCTTAAAGGGATGTTGCAGTGGAAAGGCCGGTG
ATTACGCTAAAGCTTCTGCCAGCTTCAAGCGCGCACAACATTTGGCCGAA
AGAGCCGACGACGCAATGTTGGCGGTAACCGCCATGATCAACCGTGCAAT
CTGCGAAATTCAAATCGGAGACGCCAAAGGGGCGGCGACTTCGTCGCGTA
GAGCGTTCGTCAAGGCACAGACCGAGGGTGGGTCACAGATGACCTTCCTT
GCCCACGTTATCAGGGCTGTGAGCTACCAGATGGCGGGCAACTTCCTCGC
TGCATGCAATGAGCACGAGGCCGCTGCGATGCTCGCAGCCGTGGCAGATA
ATTTCAATCCAGAACCACGACTCGCTCTCGCCATGGACATCAACCAGGGG
ATCAGGTGAGGCTGTGAGCTACCAGATGGCGGGCAACTTCCTCGCTGCAT
GCAATGAGCACGAGGCCGCTGCGATGCTCGCAGCCGTGGCAGATAATTTC
AATCCAGAACCACGACTCGCTCTCGCCATGGACATCAACCAGGGGATCAG
GTGA
back to top