mRNA_H-elongata_contig79460.15602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79460.15602.1
Unique NamemRNA_H-elongata_contig79460.15602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: D8LDU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU4_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.560e-78
Identity = 139/212 (65.57%), Postives = 152/212 (71.70%), Query Frame = 1
Query:  382 SWGPVVTDRNYRRHVRKHQKTWN---YEEDKGRNGPKKGERTMEFGGSNDGGREVRGTVSG------------REAGAPLP-IPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVS 969
            +WGPV+TDRNYRRHV KH+KTWN   YEE+                                           R+ G  LP +PV+LGVN+ EGLMFVHGAFP+TMPKLVYYSFVTALFRTSV+ VL AYGHLADQCEESGDYRRVMSQIMHDYLFRCP LRAAQLLQE+N   APVFVY+FSHPTEVPGF ECSGSSCHTAELP+VFNN S
Sbjct:  236 TWGPVITDRNYRRHVGKHRKTWNCDTYEEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEGQALPPVPVMLGVNSHEGLMFVHGAFPVTMPKLVYYSFVTALFRTSVIGVLRAYGHLADQCEESGDYRRVMSQIMHDYLFRCPNLRAAQLLQEQNGRDAPVFVYEFSHPTEVPGFPECSGSSCHTAELPYVFNNTS 447          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A6H5KQP1_9PHAE (COesterase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 3.410e-76
Identity = 150/288 (52.08%), Postives = 169/288 (58.68%), Query Frame = 1
Query:  385 WGPVVTDRNYRRHVRKHQKTWN---YE---EDKGR--------NGPKKGERTMEFGGSNDG--------------------------------------------------------------------------GREVRGTVSGREAGAPLP-IPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSLPEE 981
            WGPV+TDRNYRRHV KH+KTWN   YE   E++ R        NG  K ++T     S+DG                                                                          GR +     GR+ G  LP +PV+LGVN+ EGLMFVHGAFP+TMPKLVYYSFVTALFRTSV+ VL AYGHLADQCEESGDYR VMSQIMHDYLFRCP LRAAQLLQE+N   APVFVY+FSHPTEVPGF ECSGSSCHTAELP+VFNNV + +E
Sbjct:   12 WGPVITDRNYRRHVGKHRKTWNCDAYEDEAEERERQESRTVTLNGLGKSKKTKSTNASSDGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERPSMSRIGPAHNYTAPFMNVVQPLEALAAAAEHASAARAPGGRGMMNRGRGRDEGQALPPVPVMLGVNSHEGLMFVHGAFPVTMPKLVYYSFVTALFRTSVIGVLRAYGHLADQCEESGDYREVMSQIMHDYLFRCPNLRAAQLLQEQNGRDAPVFVYEFSHPTEVPGFPECSGSSCHTAELPYVFNNVEVIKE 299          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A835Z3F7_9STRA (Carboxylic ester hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.580e-44
Identity = 92/213 (43.19%), Postives = 118/213 (55.40%), Query Frame = 1
Query:  382 SWGPVVTDRNYRRHVRKHQKTWNYEEDKGRNGPKKGERTMEFGGSNDGGREVRGTVSGREAGAPLP------------IPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSA------PVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNV 966
            +WGPV+TD  +R  +R++ +T                              V+G V       PL             +PV++G N+ EG MFV+ AFP+ MPK VY+ FV ALF+ S  +VL  YG +A Q   SGDYR VMSQI+HDYLFRCP  R A LLQ++   S       PVFVY+FSHPT VPGF  C+G +CHTAELP+VF  +
Sbjct:  282 TWGPVMTDSIHRNLLRRYSRT------------------------------VQGAVPLMNVTQPLTMWGAATGGTMAEVPVLMGANSHEGQMFVYAAFPVNMPKYVYWGFVLALFKDSAPKVLQQYGEMARQYRGSGDYRPVMSQIIHDYLFRCPLRRTAHLLQDRRDRSENPAGTPPVFVYEFSHPTTVPGFAACNGLACHTAELPYVFEQL 464          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A4D9D607_9STRA (COesterase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D607_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.520e-37
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1
Query:  580 IPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLAD-----QCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKN--SYSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSL 972
            +PVILG   DEG MFV+  FP  MPK +Y+ FV  LFR S  +++  Y  + +     Q  +  DYR V+S I++DY+FRCPT RAA LLQE++    +APV+V+QFSHPT VPGF EC G SCHT+ELPFVFNN+ +
Sbjct:  387 VPVILGSCKDEGQMFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGAKRIDYRPVLSIILNDYMFRCPTWRAAHLLQERSVDPAAAPVYVFQFSHPTRVPGFPECHGLSCHTSELPFVFNNLDV 524          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A7S4DLF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLF7_HETAK)

HSP 1 Score: 134 bits (338), Expect = 6.640e-34
Identity = 67/137 (48.91%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  580 IPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYS--APVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSLPEED 984
            +PV+LG N  EG MFV+  +   M  + Y S V  LF+TS  RVL  Y HLAD C  + D+R  +S I++DY+FRCPT RAA  L   +S    APV+VY+F+ PT +  F EC G +CHTAELPFVF  V +  E+
Sbjct:   12 VPVLLGTNRHEGEMFVYSVWGGRMGLIAYRSLVNLLFKTSAPRVLRTYKHLADPCRVTNDFRPALSAILNDYMFRCPTWRAANALYAVSSGRGRAPVYVYEFALPTRLQDFPECYGKACHTAELPFVFGQVDVIHEN 148          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A6U9X0T4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9X0T4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.120e-19
Identity = 75/256 (29.30%), Postives = 94/256 (36.72%), Query Frame = 1
Query:  571 PLPIPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESG-------------------------------------------------------------------------------------------------------DYRRVMSQIMHDYLFRCPTLRAAQLLQ----EKNSYSAP-----------VFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSLPEED 984
            P  IP+I+G N  EG +FVHGAFP+TM K VY+ FV ALF+ S  RVL  Y     Q E                                                                                                          DYR VMS+I++DYLFRCP+   A LL     +K+ Y              V+VY+FS PT VPG+ EC G SCHTAELP+VF ++ +   D
Sbjct:  620 PDDIPIIIGTNKHEGEIFVHGAFPLTMSKAVYWMFVGALFKDSAPRVLKHYRPYIAQLEADAAILVEKQVAEEEDKQYWMENQEELENEYRELLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTVFSPKDPAAVESRRQQRLDNLKKKAKEKALKKAAKVSIDYRPVMSRIINDYLFRCPSWHYAHLLSLQRVKKSKYRRKKGVRRRDNLNNVYVYRFSQPTHVPGYKECWGKSCHTAELPYVFESMDIIRSD 875          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A448ZKD1_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKD1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-19
Identity = 75/254 (29.53%), Postives = 95/254 (37.40%), Query Frame = 1
Query:  571 PLPIPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESG------------------------------------------------------------------------------------------------------DYRRVMSQIMHDYLFRCPTLRAAQLLQ----EKNS----------YSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSLPEED 984
            P  IP+I+G N  EG +FVHGAFP+TM K VY+ FV ALF+ S  RVL  Y     Q E                                                                                                         DYR VMS+I++DYLFRCP+   A LL     +K+S          +   V+VY+FS PT VPG+ EC G SCHTAELP+VF ++ +   D
Sbjct:  824 PDDIPIIIGTNKHEGEIFVHGAFPLTMSKAVYWMFVGALFKDSAPRVLKHYRPYVAQLEADAAVLVEKQVSEEEHKQYWMENKEELENEYLELLKTTAATRGGGQSNGNRNETHGETETASSWWQKVFSPRDPEEIESRRRQRLEILKKKAKEKALKKAAKVSIDYRPVMSRIINDYLFRCPSWHYAHLLSLQRVKKSSTRRKKGGHRDHRNNVYVYRFSQPTHVPGYKECWGKSCHTAELPYVFESMDIIRSD 1077          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A1E7EYD9_9STRA (Putative carboxylesterase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYD9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.080e-19
Identity = 73/253 (28.85%), Postives = 91/253 (35.97%), Query Frame = 1
Query:  571 PLPIPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESG----------------------------------------------------------------------------------------------------------------DYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSAP---VFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSLPEED 984
            P  IP+I+G N  EG +FVHGAFP+TM K VY+ FV ALF+ S  RVL  Y     Q E                                                                                                                   DYR VMS+I+ DYLFRCP+   A  L  +N+       V+VY+FS PT +PGF EC G SCHTAELP+VF ++ +   D
Sbjct:  455 PDHIPIIIGTNKHEGELFVHGAFPLTMSKTVYWMFVGALFKDSAPRVLKHYRPYVAQLEADAAALAEKQVSEEMKKQYFLENQQELEEEYRTLLHTSTTTRGGSTSGENVTENKSQKEDTEKEGNGDEDFKRWWHAFTPSADPEQVKSRQQQRLDNMKRKAKERALREAAKISLDYRPVMSRIITDYLFRCPSWMYAHQLNNRNNNQDNRNNVYVYRFSQPTHIPGFPECWGKSCHTAELPYVFESMDIIRSD 707          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A1Z5KR26_FISSO (Cholinesterase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR26_FISSO)

HSP 1 Score: 97.8 bits (242), Expect = 9.450e-19
Identity = 71/253 (28.06%), Postives = 88/253 (34.78%), Query Frame = 1
Query:  571 PLPIPVILGVNADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEESG--------------------------------------------------------------------------------------------------------------------DYRRVMSQIMHDYLFRCPTLRAAQLLQE---KNSYSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSL 972
            P  IP+I+G N  EG MFVHGAFP+TM K VY+ FV ALFR S  RVL  Y    DQ E                                                                                                                       DYR VMS+I+ DYLFRCP    A  + +   +  +   V+VYQFSH T +PGF EC G +CHTAE+P+ F  + +
Sbjct:  366 PDDIPIIIGANKHEGEMFVHGAFPITMSKAVYWMFVGALFRDSASRVLRHYRGYVDQIEREAQELARLQIEEEENRQYYLENREQLEKEYQMLLDMNVSSTDDVTDRPGIEEFVATWSRGGSIVSDLGNSSRTFFSRLWPFPSNSTSLSDEERSRIRDERRKVRAKEKALREAAKVVVDYRPVMSRIIDDYLFRCPAWHFAHKVSQIRLRKGHPNNVYVYQFSHSTHIPGFKECWGKACHTAEIPYAFEAMDI 618          
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Match: A0A7S2JQG2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JQG2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.700e-17
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  730 LADQCEESGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSAPVFVYQFSHPTEVPGFVECSGSSCHTAELPFVFNNVSL 972
            L +  + + DYR VMSQI+ DYLFRCP+L  A +L  KN     V+VY+FS PT +PG+ EC G SCHTAELP+VF  + +
Sbjct:   24 LKEAAKVAVDYRPVMSQIIDDYLFRCPSLHFADILPSKN-----VYVYRFSQPTHIPGYKECWGKSCHTAELPYVFEAMDV 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79460.15602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU4_ECTSI2.560e-7865.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQP1_9PHAE3.410e-7652.08COesterase domain-containing protein n=1 Tax=Ectoc... [more]
A0A835Z3F7_9STRA5.580e-4443.19Carboxylic ester hydrolase n=1 Tax=Tribonema minus... [more]
A0A4D9D607_9STRA5.520e-3753.62COesterase domain-containing protein n=2 Tax=Monod... [more]
A0A7S4DLF7_HETAK6.640e-3448.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U9X0T4_9STRA3.120e-1929.30Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZKD1_9STRA3.220e-1929.53CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1E7EYD9_9STRA4.080e-1928.85Putative carboxylesterase n=1 Tax=Fragilariopsis c... [more]
A0A1Z5KR26_FISSO9.450e-1928.06Cholinesterase n=2 Tax=Fistulifera solaris TaxID=1... [more]
A0A7S2JQG2_9STRA2.700e-1753.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79460contigH-elongata_contig79460:418..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.0
Seed ortholog evalue4.7e-68
Seed eggNOG ortholog2880.D8LDU4
KEGG rclassRC00020,RC00041
KEGG koko:K01049,ko:K01050
KEGG ReactionR01026
KEGG Pathwayko00564,ko04725,map00564,map04725
EggNOG free text desc.acetylcholinesterase activity
EggNOG OGsCOG2272@1,KOG4389@2759
EC3.1.1.7,3.1.1.8
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size989
Cds size987
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79460.15602.1prot_H-elongata_contig79460.15602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79460 418..2563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.3404577-CDS-H-elongata_contig79460:417..9571622931199.3404577-CDS-H-elongata_contig79460:417..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 418..957 +
1691679738.2876506-CDS-H-elongata_contig79460:417..9571691679738.2876506-CDS-H-elongata_contig79460:417..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 418..957 +
1622931199.3544784-CDS-H-elongata_contig79460:1134..12511622931199.3544784-CDS-H-elongata_contig79460:1134..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 1135..1251 +
1691679738.2997456-CDS-H-elongata_contig79460:1134..12511691679738.2997456-CDS-H-elongata_contig79460:1134..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 1135..1251 +
1622931199.372621-CDS-H-elongata_contig79460:1752..19321622931199.372621-CDS-H-elongata_contig79460:1752..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 1753..1932 +
1691679738.309302-CDS-H-elongata_contig79460:1752..19321691679738.309302-CDS-H-elongata_contig79460:1752..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 1753..1932 +
1622931199.3865106-CDS-H-elongata_contig79460:2413..25631622931199.3865106-CDS-H-elongata_contig79460:2413..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 2414..2563 +
1691679738.320026-CDS-H-elongata_contig79460:2413..25631691679738.320026-CDS-H-elongata_contig79460:2413..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79460 2414..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79460.15602.1

>prot_H-elongata_contig79460.15602.1 ID=prot_H-elongata_contig79460.15602.1|Name=mRNA_H-elongata_contig79460.15602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
SEGDEERPGLLRPGLSPSRACVRGVEGSGVADGRTKERGRLLQASDMKMR
KDLHSSHVPTDHPRLSSKLVCRKATRARVCRLQRSHRSNYPRDVLVTMFY
YLSIRVKIPRRADESLSYFILWTFYLNSWGPVVTDRNYRRHVRKHQKTWN
YEEDKGRNGPKKGERTMEFGGSNDGGREVRGTVSGREAGAPLPIPVILGV
NADEGLMFVHGAFPMTMPKLVYYSFVTALFRTSVVRVLHAYGHLADQCEE
SGDYRRVMSQIMHDYLFRCPTLRAAQLLQEKNSYSAPVFVYQFSHPTEVP
GFVECSGSSCHTAELPFVFNNVSLPEED*
back to top

mRNA from alignment at H-elongata_contig79460:418..2563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79460.15602.1 ID=mRNA_H-elongata_contig79460.15602.1|Name=mRNA_H-elongata_contig79460.15602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2146bp|location=Sequence derived from alignment at H-elongata_contig79460:418..2563+ (Himanthalia elongata Himel1 dioecious)
TCGGAAGGCGATGAAGAGAGGCCTGGACTGCTTCGACCTGGACTGTCTCC AAGCCGAGCCTGTGTCAGAGGTGTTGAGGGTTCAGGAGTCGCTGATGGGC GTACCAAGGAGCGTGGGCGACTTCTTCAGGCAAGTGATATGAAGATGAGG AAAGACCTTCATTCTTCCCATGTCCCAACTGACCACCCTCGCTTAAGTTC GAAACTCGTCTGTAGAAAGGCAACGCGTGCTCGAGTTTGTAGATTACAGA GATCGCATCGTTCGAATTATCCACGGGACGTTTTGGTGACGATGTTTTAT TACTTGAGTATTCGCGTAAAAATACCTAGACGAGCAGACGAGTCTCTCTC ATATTTTATCCTCTGGACGTTCTACCTCAACAGCTGGGGTCCCGTGGTCA CCGACCGTAATTACCGGCGGCACGTAAGGAAGCATCAGAAAACCTGGAAT TATGAAGAAGACAAGGGTAGAAATGGACCAAAGAAAGGCGAGAGAACCAT GGAGTTTGGAGGAAGCAACGATGGGGGGCGCGAGGTTCGCGTCGGGTTCA AATCCAATTCCGGAATGCTGAGGCTGGGGCCTAAGCATAACTACACCGCA CCGTTCATGAACGTTGTTCAACCGCTGGAGGTGCTCACTGCGAAGGCGAC GTTGGCAGTTTTCGCCAGGGGGCGCGGGCCAAGGGAAGGAACGCGTCGGG GGGCGGTGGAGGAAAAGGGTACGGTCAGCGGACGAGAGGCCGGCGCTCCG TTGCCCATTCCAGTGATCTTAGGCGTCAATGCGGACGAGGGACTGATGTT CGTCCATGGAGCATTTCCGATGACGATGCCGAAGGTGCGATTTCTAGCTT TAGATGTTTTGTGCTCTGACGCGCCTTACAGTTGGAAACCTGGGCGAGCA GAAGGGAAGGGATGGGGAGGAATGTGCTATACTTCGTACAAAATATGTTT CTATCTCTCACTTTAAGAGCTTCACCTTTGCGTGCATCTTCCACCGCTTC GGTAAGGTTGTGACGAGAACAACGTTTCTTGTGTTCTGTCTCGCTTACTC CTCTCTTGGCTGTCTGTCTGTGTCTATGTCGGCATGTTTTCCCCTGTATC GTTTTGTGTCTCTGCCTGGATATATATTATGTCTGTGTCTGTATGCTCCT ATCTATCTCTATATGTTGTCGCTCTGTTCCTTTGTATCTTGCTACTCCTG CTTCTTGACATTTCCGGAACATCCCGCACCCTGCTCTTAAAAAATCCACG GATCGATCGGCACGGATGGATCGACACGAATCGACTCACGCGCCCCTTTC TCTGCATGCTGCGTCACCAAAACCCGCCTCGAAAGCTCGTATACTACTCC TTCGTGACGGCGCTCTTTCGAACGAGCGTGGTGAGGGTGCTCCATGCCTA CGGGCATTTAGCCGACCAGTGCGAAGAGTCCGGCGACTACCGCAGGGTCA TGTCGCAGATTATGCACGACTACCTGTTCCGATGCCCGACACTACGCGCG GCGCAACTACTCCAGGTTTGATACGATTAATATGTAAATCTATATTATTT GAGAGTTCCGCTCGCCTAATTCTGATGCGAGGTTGTTGAGAGGAGTCCAA GCGCGACGAGTTCCTGTCAAGAGAAAGGGGCCACAAACTGGCATGCAACG GAAGTATTTTAAATGATGATGAGGTGGATAGTCACGGGACCTCTTTGACT TCACGGTTCAAGTGACGAACGCGAGTTGCGTTCCGGTAGCAGCTCCGAAG CAAACCGATTATGTCACAGAAGAGTTGGTTTGCGATTTTTCCTTCCTTTG TTTTTGCCGTCGGGGGAAGGAGTATCGTATTGTTTGCTCTCGTTTACACA TACCCGTTATCTTGCGTTGGTGCTTTTCGTCCAGGGACGCCTTGCACGAG CGTTAGCACGGACCTGCTGAACCGCAATAACCCCCCGTCTTTCCGACAGT CTTTCCCTGCTATTCTCTTCGCGTTCTCATCCGACATGGTAAACAGGAGA AGAACAGCTATTCGGCGCCCGTGTTCGTCTACCAGTTTAGCCATCCGACT GAGGTGCCGGGGTTCGTAGAGTGCTCCGGAAGCTCTTGCCACACGGCGGA GTTGCCTTTTGTCTTCAACAATGTGAGCCTTCCCGAAGAGGATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig79460:418..2563+

>mRNA_H-elongata_contig79460.15602.1 ID=mRNA_H-elongata_contig79460.15602.1|Name=mRNA_H-elongata_contig79460.15602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig79460:418..2563+ (Himanthalia elongata Himel1 dioecious)
TCGGAAGGCGATGAAGAGAGGCCTGGACTGCTTCGACCTGGACTGTCTCC
AAGCCGAGCCTGTGTCAGAGGTGTTGAGGGTTCAGGAGTCGCTGATGGGC
GTACCAAGGAGCGTGGGCGACTTCTTCAGGCAAGTGATATGAAGATGAGG
AAAGACCTTCATTCTTCCCATGTCCCAACTGACCACCCTCGCTTAAGTTC
GAAACTCGTCTGTAGAAAGGCAACGCGTGCTCGAGTTTGTAGATTACAGA
GATCGCATCGTTCGAATTATCCACGGGACGTTTTGGTGACGATGTTTTAT
TACTTGAGTATTCGCGTAAAAATACCTAGACGAGCAGACGAGTCTCTCTC
ATATTTTATCCTCTGGACGTTCTACCTCAACAGCTGGGGTCCCGTGGTCA
CCGACCGTAATTACCGGCGGCACGTAAGGAAGCATCAGAAAACCTGGAAT
TATGAAGAAGACAAGGGTAGAAATGGACCAAAGAAAGGCGAGAGAACCAT
GGAGTTTGGAGGAAGCAACGATGGGGGGCGCGAGGTTCGCTCGGAAGGCG
ATGAAGAGAGGCCTGGACTGCTTCGACCTGGACTGTCTCCAAGCCGAGCC
TGTGTCAGAGGTGTTGAGGGTTCAGGAGTCGCTGATGGGCGTACCAAGGA
GCGTGGGCGACTTCTTCAGGCAAGTGATATGAAGATGAGGAAAGACCTTC
ATTCTTCCCATGTCCCAACTGACCACCCTCGCTTAAGTTCGAAACTCGTC
TGTAGAAAGGCAACGCGTGCTCGAGTTTGTAGATTACAGAGATCGCATCG
TTCGAATTATCCACGGGACGTTTTGGTGACGATGTTTTATTACTTGAGTA
TTCGCGTAAAAATACCTAGACGAGCAGACGAGTCTCTCTCATATTTTATC
CTCTGGACGTTCTACCTCAACAGCTGGGGTCCCGTGGTCACCGACCGTAA
TTACCGGCGGCACGTAAGGAAGCATCAGAAAACCTGGAATTATGAAGAAG
ACAAGGGTAGAAATGGACCAAAGAAAGGCGAGAGAACCATGGAGTTTGGA
GGAAGCAACGATGGGGGGCGCGAGGTTCGCGGTACGGTCAGCGGACGAGA
GGCCGGCGCTCCGTTGCCCATTCCAGTGATCTTAGGCGTCAATGCGGACG
AGGGACTGATGTTCGTCCATGGAGCATTTCCGATGACGATGCCGAAGGGT
ACGGTCAGCGGACGAGAGGCCGGCGCTCCGTTGCCCATTCCAGTGATCTT
AGGCGTCAATGCGGACGAGGGACTGATGTTCGTCCATGGAGCATTTCCGA
TGACGATGCCGAAGCTCGTATACTACTCCTTCGTGACGGCGCTCTTTCGA
ACGAGCGTGGTGAGGGTGCTCCATGCCTACGGGCATTTAGCCGACCAGTG
CGAAGAGTCCGGCGACTACCGCAGGGTCATGTCGCAGATTATGCACGACT
ACCTGTTCCGATGCCCGACACTACGCGCGGCGCAACTACTCCAGCTCGTA
TACTACTCCTTCGTGACGGCGCTCTTTCGAACGAGCGTGGTGAGGGTGCT
CCATGCCTACGGGCATTTAGCCGACCAGTGCGAAGAGTCCGGCGACTACC
GCAGGGTCATGTCGCAGATTATGCACGACTACCTGTTCCGATGCCCGACA
CTACGCGCGGCGCAACTACTCCAGGAGAAGAACAGCTATTCGGCGCCCGT
GTTCGTCTACCAGTTTAGCCATCCGACTGAGGTGCCGGGGTTCGTAGAGT
GCTCCGGAAGCTCTTGCCACACGGCGGAGTTGCCTTTTGTCTTCAACAAT
GTGAGCCTTCCCGAAGAGGATTGAGAGAAGAACAGCTATTCGGCGCCCGT
GTTCGTCTACCAGTTTAGCCATCCGACTGAGGTGCCGGGGTTCGTAGAGT
GCTCCGGAAGCTCTTGCCACACGGCGGAGTTGCCTTTTGTCTTCAACAAT
GTGAGCCTTCCCGAAGAGGATTGA
back to top