mRNA_H-elongata_contig79432.15600.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79432.15600.1
Unique NamemRNA_H-elongata_contig79432.15600.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: A0A6H5JTP7_9PHAE (GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.570e-42
Identity = 61/94 (64.89%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:   13 RFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNACIHPPAADW 294
            +F ++GQCD+L ERE +SWW+EHTRSFA RQI  YERE+GWAFWTWKLED L    E+N+ A+KYWS+ +A++HGF+D DF ++ACIHPPA DW
Sbjct:  197 KFADFGQCDHLTEREGNSWWSEHTRSFAMRQIDRYEREMGWAFWTWKLEDHL----EKNEPASKYWSFSMAVEHGFIDTDFPEDACIHPPATDW 286
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: D8LEF5_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF5_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.430e-41
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:   13 RFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNACIHPPAADW 294
            +F ++GQCD+LAERE SSWW+EHTRSFA RQI  YERE+GWAFWTWKLED L    E+N+ A+KYWS+ +A++HGF+D DF ++AC+HPPA DW
Sbjct:  377 KFADFGQCDHLAEREGSSWWSEHTRSFAMRQIDRYEREMGWAFWTWKLEDHL----EKNEPASKYWSFSMAVEHGFIDLDFPNDACVHPPATDW 466
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: A0A836CCQ8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.870e-28
Identity = 45/92 (48.91%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   19 ENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNACIHPPAADW 294
            ++YGQC+++AER   SWW  H RSFA RQI+ +E+E+GW+FW WKL++Q  K    +D +A +WS++LA+  G++D  +  +AC+HPPA DW
Sbjct:  503 QDYGQCNHVAERLTDSWWTSHIRSFASRQIAVFEKEMGWSFWCWKLDEQAMK----SDPSAAFWSFKLAVHKGYIDTRYPSDACMHPPAEDW 590
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: A0A4D9D2R7_9STRA (Cellulase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2R7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.940e-28
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   13 RFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNACIHPPAADW 294
            +F+NYGQCD +A R    WW +H RSFA RQ+  YERELGW+FWT+KL+    K  E    +A  WS+RLA+K G++D  +  +AC + P ADW
Sbjct:  439 KFQNYGQCDRIARRSTDPWWKDHIRSFAHRQMDVYERELGWSFWTYKLD----KHAETTAESAPLWSFRLAVKEGYIDTSYPPHACRYDPVADW 528
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: A0A7S2XF99_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XF99_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.720e-14
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   13 RFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNA-----CIHP 279
            +F ++GQC NL ER N+  W    + FA RQ + +E+ELGW FWTWK++ +  K     D +A  WSY +A++ G+  D+    A     C HP
Sbjct:  485 QFTDFGQCKNLKER-NTPQWTALIKDFAARQRAVFEKELGWVFWTWKVDKEASK-----DISAPLWSYSMAVEAGYFPDNLNTEADVTKGCDHP 572
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BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Match: A0A6T6YDK2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6YDK2_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 4.450e-14
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:   13 RFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTWKLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDN-----ACIHP 279
            +F+++GQC +L  R    W     + F+RRQ + +E+ELGW FW WK++D   K     D +AKYWSY  A++H +   D         AC HP
Sbjct:  557 QFKDFGQCKDLESRTTDQWTT-LVKDFSRRQRAVFEKELGWIFWAWKVDDVANK-----DISAKYWSYTKAVEHEYFPKDLEKEPKVVLACDHP 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79432.15600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTP7_9PHAE6.570e-4264.89GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LEF5_ECTSI5.430e-4165.96Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A836CCQ8_9STRA2.870e-2848.91Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A4D9D2R7_9STRA6.940e-2850.00Cellulase domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2XF99_9EUKA1.720e-1439.36Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6T6YDK2_9EUKA4.450e-1438.30Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79432contigH-elongata_contig79432:2171..2879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D8LEF5
EggNOG OGs2CIRD@1,2S847@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExo-1,3-beta-glucanase, family GH5
Ec32 orthologEc-00_002090.1
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.9233367-CDS-H-elongata_contig79432:2170..23511622931198.9233367-CDS-H-elongata_contig79432:2170..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79432 2171..2351 +
1691679738.0885286-CDS-H-elongata_contig79432:2170..23511691679738.0885286-CDS-H-elongata_contig79432:2170..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79432 2171..2351 +
1622931198.9430237-CDS-H-elongata_contig79432:2763..28791622931198.9430237-CDS-H-elongata_contig79432:2763..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79432 2764..2879 +
1691679738.0978184-CDS-H-elongata_contig79432:2763..28791691679738.0978184-CDS-H-elongata_contig79432:2763..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79432 2764..2879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79432.15600.1prot_H-elongata_contig79432.15600.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79432 2171..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79432.15600.1

>prot_H-elongata_contig79432.15600.1 ID=prot_H-elongata_contig79432.15600.1|Name=mRNA_H-elongata_contig79432.15600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MYIYRFENYGQCDNLAERENSSWWAEHTRSFARRQISTYERELGWAFWTW
KLEDQLGKRDEENDHAAKYWSYRLALKHGFVDDDFTDNACIHPPAADWL
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mRNA from alignment at H-elongata_contig79432:2171..2879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79432.15600.1 ID=mRNA_H-elongata_contig79432.15600.1|Name=mRNA_H-elongata_contig79432.15600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig79432:2171..2879+ (Himanthalia elongata Himel1 dioecious)
ATGTATATATACAGATTCGAGAACTATGGGCAGTGCGATAACCTAGCGGA
GCGCGAGAACAGCAGCTGGTGGGCGGAGCACACGCGATCTTTCGCCAGGA
GACAGATAAGCACCTACGAGCGCGAGCTGGGCTGGGCTTTCTGGACCTGG
AAGCTGGAGGACCAGCTCGGTAAGCGAGATGGTCCTCGTGCTGTGTGCCG
CGTTGATTTAAGAGTACAGCACATTTGCGCACCAGATGTGGCAGAAGGGG
GGGGTGTTGCTCCTGCAGTTGGTAATTATTTTTCTCCATCTATCGAGTGG
GTTTGGACGATAACAAACCATAAACACAAGCAATAAACAGCATACTATAC
AACATGTGCAGGTGTGGATGTCGCGGCTTTCAGCATACCCACAGCGTTTC
CCCCCGTCTCCCGTTCCTCCATGTACAACTCGTCACAGACTTGAGGTGTA
TTGTCCTGTGACAATGACAACCCACATCGGTGTACCGCGCGGGCAGTTCT
CCCTACCTCCCTACCTCCCTTTATTTCGTAACCTAGAGACGTCTCCTCTC
CTCTCATCCCTTATCCCGACTGTGTGTCGCCTCCCGGCTATAGAGGAAAA
CGATCATGCGGCGAAGTACTGGTCGTACCGACTCGCCCTGAAGCACGGCT
TCGTCGACGATGACTTCACGGATAACGCGTGCATTCACCCTCCGGCGGCG
GACTGGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig79432:2171..2879+

>mRNA_H-elongata_contig79432.15600.1 ID=mRNA_H-elongata_contig79432.15600.1|Name=mRNA_H-elongata_contig79432.15600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig79432:2171..2879+ (Himanthalia elongata Himel1 dioecious)
ATGTATATATACAGATTCGAGAACTATGGGCAGTGCGATAACCTAGCGGA
GCGCGAGAACAGCAGCTGGTGGGCGGAGCACACGCGATCTTTCGCCAGGA
GACAGATAAGCACCTACGAGCGCGAGCTGGGCTGGGCTTTCTGGACCTGG
AAGCTGGAGGACCAGCTCGGTAAGCGAGATGATGTATATATACAGATTCG
AGAACTATGGGCAGTGCGATAACCTAGCGGAGCGCGAGAACAGCAGCTGG
TGGGCGGAGCACACGCGATCTTTCGCCAGGAGACAGATAAGCACCTACGA
GCGCGAGCTGGGCTGGGCTTTCTGGACCTGGAAGCTGGAGGACCAGCTCG
GTAAGCGAGATGAGGAAAACGATCATGCGGCGAAGTACTGGTCGTACCGA
CTCGCCCTGAAGCACGGCTTCGTCGACGATGACTTCACGGATAACGCGTG
CATTCACCCTCCGGCGGCGGACTGGCTAAGGAAAACGATCATGCGGCGAA
GTACTGGTCGTACCGACTCGCCCTGAAGCACGGCTTCGTCGACGATGACT
TCACGGATAACGCGTGCATTCACCCTCCGGCGGCGGACTGGCTA
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