mRNA_H-elongata_contig79311.15591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79311.15591.1
Unique NamemRNA_H-elongata_contig79311.15591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79311.15591.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 9.060e-82
Identity = 119/155 (76.77%), Postives = 135/155 (87.10%), Query Frame = 1 
Query:    1 TGRDNYALVAVGARGEMPEEIRTHPCVENRTTEWHHLPFPEFYAKISAGHFVVTATAGQEYEFDRATSSVPTALLLERPLLMSSSLLGVYPCLRKSRVHSMVANDDDLCLNLQAAYDLTPEEYNEMELEARECKLEMWQTTRQTVAAMASGWTLD 465
            TGRDNY LVAVGARG++P+++    CVE RTTEW HL +PEFYA ISAGHFVVTA AG  YE+D+ATS+VPTALLLERPL+MSS+LL  YPCLRKSRVHSMVANDD LC+NLQ AYDLT EEY+EMELEAR+CKLEMW+  R+TVA MASGWTLD
Sbjct:   21 TGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDD-LCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
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BLAST of mRNA_H-elongata_contig79311.15591.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 6.430e-81
Identity = 119/155 (76.77%), Postives = 136/155 (87.74%), Query Frame = 1 
Query:    1 TGRDNYALVAVGARGEMPEEIRTHPCVENRTTEWHHLPFPEFYAKISAGHFVVTATAGQEYEFDRATSSVPTALLLERPLLMSSSLLGVYPCLRKSRVHSMVANDDDLCLNLQAAYDLTPEEYNEMELEARECKLEMWQTTRQTVAAMASGWTLD 465
            TGRDNY LVAVGARG++P+++R   CVE RTTEW HL +PEFYA ISA HFVVTA AG +YE+D+ATS+VPTALLLERPL++SS+LL  YPCLRKSRVHSMVANDD LCLNLQ AYDLT EEY+EMELEAR+CKLEMW+  R+TVA MASGWTLD
Sbjct:  112 TGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDD-LCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
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BLAST of mRNA_H-elongata_contig79311.15591.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 7.930e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:  118 PEFYAKISAGHFVVT-ATAGQEYEFDRATSSVPTALLLERPLLMSSSLLGVYPCLRKSRVHSMVANDDDLCLNLQAAYDLTPEEYNEMELEARECK 402
            P FY  I+   F+VT A    EY   RA+SS+PTA++ E PL++++ LL  Y CL    +H  VA+ DD C  L+ A  LT +E   M  E R CK
Sbjct:   20 PYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDD-CKALKNAIQLTDQERKTMREEIRRCK 114
[Close]
BLAST of mRNA_H-elongata_contig79311.15591.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 2.900e-7
Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = 1 
Query:    7 RDNYALVAVGARGEMPEEIRTHPCVENRTTEWHHLPFPEFYAKISAGHFVVTATAGQEYEFDRATSSVPTALLLERPLLMSSSLLGVYPCLRKSRVHSMVANDDDLCLNLQAAYDLTPEEYNEMELEARECKLEMWQTTRQTVAAMASG 453
            R +  LV +G    +   +     + N TT      +  F+  +S+  + +  +    YE  R TSS+PT+L+   P+++ + LL  Y CLR   VH   +  DD C +++A   L  E   +M  E   C  ++   +R T+  +  G
Sbjct:  241 RHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPDYLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADD-CSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79311.15591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSI3_ECTSI9.060e-8276.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJA8_9PHAE6.430e-8176.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SI13_9ARCH7.930e-1342.71Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482SHX3_9ARCH2.900e-726.17Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79311contigH-elongata_contig79311:188..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size465
Cds size258
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.1389878-UTR-H-elongata_contig79311:187..2771622931198.1389878-UTR-H-elongata_contig79311:187..277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 188..277 -
1691679737.842883-UTR-H-elongata_contig79311:187..2771691679737.842883-UTR-H-elongata_contig79311:187..277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 188..277 -
1622931198.1549547-UTR-H-elongata_contig79311:746..7891622931198.1549547-UTR-H-elongata_contig79311:746..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 747..789 -
1691679737.8520372-UTR-H-elongata_contig79311:746..7891691679737.8520372-UTR-H-elongata_contig79311:746..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 747..789 -
1622931198.2477138-UTR-H-elongata_contig79311:2647..27211622931198.2477138-UTR-H-elongata_contig79311:2647..2721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 2648..2721 -
1691679737.9154327-UTR-H-elongata_contig79311:2647..27211691679737.9154327-UTR-H-elongata_contig79311:2647..2721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79311 2648..2721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.1751528-CDS-H-elongata_contig79311:789..8181622931198.1751528-CDS-H-elongata_contig79311:789..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 790..818 -
1691679737.869867-CDS-H-elongata_contig79311:789..8181691679737.869867-CDS-H-elongata_contig79311:789..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 790..818 -
1622931198.1934016-CDS-H-elongata_contig79311:1248..13441622931198.1934016-CDS-H-elongata_contig79311:1248..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 1249..1344 -
1691679737.8846266-CDS-H-elongata_contig79311:1248..13441691679737.8846266-CDS-H-elongata_contig79311:1248..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 1249..1344 -
1622931198.2105205-CDS-H-elongata_contig79311:1561..16551622931198.2105205-CDS-H-elongata_contig79311:1561..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 1562..1655 -
1691679737.8946671-CDS-H-elongata_contig79311:1561..16551691679737.8946671-CDS-H-elongata_contig79311:1561..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 1562..1655 -
1622931198.2277164-CDS-H-elongata_contig79311:2608..26471622931198.2277164-CDS-H-elongata_contig79311:2608..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 2609..2647 -
1691679737.9042716-CDS-H-elongata_contig79311:2608..26471691679737.9042716-CDS-H-elongata_contig79311:2608..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79311 2609..2647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79311.15591.1prot_H-elongata_contig79311.15591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79311 790..2647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79311.15591.1

>prot_H-elongata_contig79311.15591.1 ID=prot_H-elongata_contig79311.15591.1|Name=mRNA_H-elongata_contig79311.15591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MRGESHDGMAPPSFPRILRENQRGPLRGDSNGWARIRVRSSYVIGTNRAP
ARETAIDVVVAARRLPMPQEVPGPQHGGKRRRSLS*
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mRNA from alignment at H-elongata_contig79311:188..2721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79311.15591.1 ID=mRNA_H-elongata_contig79311.15591.1|Name=mRNA_H-elongata_contig79311.15591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2534bp|location=Sequence derived from alignment at H-elongata_contig79311:188..2721- (Himanthalia elongata Himel1 dioecious)
ACAGGGCGGGACAATTACGCATTGGTTGCCGTGGGCGCCAGGGGCGAGAT
GCCCGAAGAGATCAGAACGCACCCATGCGTGGAGAATCGCACGACGGAAT
GGCACCACCTTCCGTGAGCACTGGTGTAATCCTATTGGGGGAGGGAGGCG
TTATCTAGGGGGAGGGGGGGGGGGGCTTCTGTCAAATGTATGTTGTACCC
CCACGGATATAGACCGCGCATCCCAACAACAATACCAGGATGGAGCGATA
GGTGGGGTTTTTGTCGGGCATGCTACGTTTCACAAGGATGAGAAGCAGAT
TTTAGTCATCATCCTTGAGTTTGCTAGGCCAAAGCGGGGAGTCATGGGCC
ATTGGTAGATTTGATACAAGCCGGGCATAGCCAAATATTGCAGATTCAGC
GGAGTTGGCTATGCTCCCCAAGCGTGCCTCGAAGGATCTTTGATGTCTGT
GCGAACGCACACCACATGCACAGCGGTATGTGGGTGTGATACGCTCAAGA
CTATACTCTTCTCAAGAATACTCCTGGCCGAAGTGCCGCTTTCGCAAAGC
AGTGGTTGCTCTAGGACTTTCCCCAACACTCTCATCATATTTTTTTCAGC
AGTCATCCTACAGTATAAAATGTTATGCGCTTCACCCCTCGTAAGGAAGA
GCAGAAAGACTCCTCGACCGAGGGCTCTGATCTCATATATGACCCACACT
GTATTAACTCCCTCATAGCAGTTTAACGGCACCAGGCATAAGGGGGCGGG
TCGGGGCTGAACTGTGCGACACGCGTAAGCCATATTTGTCGTTACTCAGG
AAATGGAATGTGGAAAATGGGATATGGGGGCATTGGAGGCAGGGGGGAAG
GGAAAGGTTCATCGGTATTGGAGGGATTTCACGGTTCTGTGGCCTAGATA
CGTGGCTTGTAGAACGATAGATTCTTGCTTCTTGCTATACCCTTTGACGT
GCCGTGCTGGCATGATCACCCGTCCCCCGTCATCTGAGTGAAAAACCCAC
CACAACAACGTTTTGCTTGCGTTTAATGTTTGTGTTCGCGTTTTGGTTGT
TGGTTTTTGGGGGAAGTTTCCCAGAATTTTACGCGAAAATCAGCGCGGGC
CACTTCGTGGTGACAGCAACGGCTGGGCAAGAATACGAGTTCGATCGAGC
TACGTCATCGGTGCGTATGCCCGAGCAACGCTGTTAAAATTCAGGGTATA
TCTGGCGTGTTCCTATATGCCTGGAAGATGTTGTAGGCGGCTTCGGGGTA
CGCGATTCGCTAGCGTTTCAGGGGCGTTGCTTTGGGGGGTGGGGGAGGAG
AGGCAGCGGGGTCGTTACGAAAAAGGAGCGTGATTCCCTCCATGTGCCGC
TTCGTGACCCGATTGGTTTCTCCACAGGTACCAACCGCGCTCCTGCTCGA
GAGACCGCTATTGATGTCGTCGTCGCTGCTAGGCGTTTACCCATGCCTCA
GGAAGTCCCGGGTCCACAGCATGGTGAGAAATCTGGGGTGGATATATTAG
AACACCAAACGAGGACAGACAGGCGTGGCATGATTTTGTCTGTCCCCGGG
GCGCGGTGTGCGGGGCGAGGGCGGCGAGATCCGAAGAACCGGTTTTTGAA
AGAGAAAGCAACCAAAGCCATATGGATGTCATTATCCTTCCACCCTCTCG
TCTACTGTTTCTGCCGCTCTGACGAAAAAGTGGTTAAAAAACCTCCCCCC
GGACAAGCAACCGAAGGACTATTCTCCGCCCCCCCTTCCCCCTCTCTATC
CTCTAGTAAAAAGTGAACAGACGGAGGGAGGGAGGGTGGCGGTGTGAATG
ACCTCGCGCTCACTATGACGGACAGAAAAAAAAAAAAACTTTGAGGCCAA
ACAACCTTGGCTTATCTGCTCGCGCGCGCGTGATCGATGGGAATGTTTCT
CAGGTGGCAAACGACGACGATCTCTGTCTTAACCTTCAGGCCGCGTATGA
CCTCACGCCGGAAGAGTATAACGAGGTAAACACACACACATTATATATAT
ATATATAAGGGGCAGAAATTATATTTTCTATCGCCAGCAAGCCCCTCCTC
CATCCCATGTTCGCTTGCGCTGTCACCGCCGAGTCCTTGACGGCGGCGCC
TTTACCATGGAGTATAGAGTGGTTTCATATTTCCTCCTCCTCCCTCCCCC
CCGCTCTTTAATATATTCCTAGATCATAGGCCATCGGCACCCTACGCGGC
AAGGCTTGAAACCGCCTTATTTCGTTCGATTTCCGCGCTTTGTGAAGCCC
GCTGGCACAATGTTCGTTTTGTGTCGCTCGCTTTGGTCATTATTGTCGTT
TTTATTCATTTTTGAGGGGGATTGGTGCGCTCTTCTGCCCAACACTTCGA
CCCCGATTCGCTTGTTTGAAGAAATCGCTGAGCACACCATCTTATTCGGA
ACCAACCCAGCAAAATATCGGCTTTACTTTTCGGCTTTTGGCAGATGGAG
CTCGAGGCCCGCGAATGCAAGCTGGAGATGTGGCAGACGACTCGGCAGAC
GGTGGCCGCCATGGCTTCCGGCTGGACGCTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig79311:188..2721-

>mRNA_H-elongata_contig79311.15591.1 ID=mRNA_H-elongata_contig79311.15591.1|Name=mRNA_H-elongata_contig79311.15591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig79311:188..2721- (Himanthalia elongata Himel1 dioecious)
ATGCGTGGAGAATCGCACGACGGAATGGCACCACCTTCCATGCGTGGAGA
ATCGCACGACGGAATGGCACCACCTTCCTTTCCCAGAATTTTACGCGAAA
ATCAGCGCGGGCCACTTCGTGGTGACAGCAACGGCTGGGCAAGAATACGA
GTTCGATCGAGCTACGTCATCGTTTCCCAGAATTTTACGCGAAAATCAGC
GCGGGCCACTTCGTGGTGACAGCAACGGCTGGGCAAGAATACGAGTTCGA
TCGAGCTACGTCATCGGTACCAACCGCGCTCCTGCTCGAGAGACCGCTAT
TGATGTCGTCGTCGCTGCTAGGCGTTTACCCATGCCTCAGGAAGTCCCGG
GTCCACAGCATGGTACCAACCGCGCTCCTGCTCGAGAGACCGCTATTGAT
GTCGTCGTCGCTGCTAGGCGTTTACCCATGCCTCAGGAAGTCCCGGGTCC
ACAGCATGGTGGCAAACGACGACGATCTCTGTCTTAAGTGGCAAACGACG
ACGATCTCTGTCTTAA
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