mRNA_H-elongata_contig793.15589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig793.15589.1
Unique NamemRNA_H-elongata_contig793.15589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 2.910e-84
Identity = 137/284 (48.24%), Postives = 180/284 (63.38%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGENQTNIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSD---PDTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIV-QDPHLKPRKVWPSFVAGTEG 843
            +Y YPD+WVCL    GCD+ +L E+C+ S   T  G TSA + PG      E ++P   M          + GWCVEFETS +   +G ERN+  YLDY+++ MYWYPGG+  +S TCV E  GW  H E +Y  L D   P++ +VS  IQ+PY+C+TN S+SH FTY+G+GVT E  L  E  ++  AL++ST  HKD+V   +    PYA LSLQ QQE +S  VITE DP D+AE+ G +GGFWDL++++WP+FFVA   QDPHLKPR    S   G EG
Sbjct:   54 VYEYPDIWVCLYGEYGCDSWELEEECMESAQLTGWGNTSAVFYPGGEY---EQTIPGVGMLT-------PEDGWCVEFETSTISQFLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVE--GWEPHSEWMYVKLKDSGYPESGLVSTGIQVPYSCITNVSSSHSFTYVGMGVTIEERLGEEPVATNKALSVSTATHKDKVNAAI--DKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLEG 323
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 5.410e-83
Identity = 131/282 (46.45%), Postives = 191/282 (67.73%), Query Frame = 1 
Query:    1 EIYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGENQTNIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVF-TSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFV-AIVQDPHLKPRKVWPSFVAGTE 840
             +Y YPD +VCL    GCD   L E C +S+ DT+GG ++A + PG +          Q +   A++   D+RGWCV FETSA++  +  ER+ +DY+   +++MYWYPGG+A  STTC+ EEG W +H E+V+ +L D DT ++SA IQ+ Y+CMT+ES+SH FTYMGIG+T+E +L  + T+SY AL  S+  +KD+  + +   + PYA+LS+++ Q +DS   ITEI+PL++AE+ G +GGFWDL+L+LWP+FF+ A  QDPHLK R    S   G+E
Sbjct:   53 NVYRYPDTYVCLYNFFGCDDMALEEFCASSVFDTEGGSSTAVFNPGGDLE--------QEIATTAYLT--DERGWCVSFETSAVDI-VDGERDPEDYI---LLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVFTYMGIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRGSE 320
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.430e-82
Identity = 139/286 (48.60%), Postives = 181/286 (63.29%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISD--TDGGFTSATYQPG---ENQTNIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIV-QDPHLKPRKVWPSFVAGTEG 843
            ++ YPDVWVCL    GCD  +L E+C+ S +   T  G +SA Y PG   E + ++E  L                 GWCVEF+TS +   +G ER++  YLDY+++ MYWYPGG   +STTCV E  GW THK+ +Y +L+DP    VS  IQ+PY+C+TN S+SH  TY+GIGVT E +L  E   +  AL++ST   KDEV   +    PYA LSLQVQQE +S  VITE+DPLD+AE+ G +GGFWDL++I+WP+FFVA   QDPHLKPR    S   G  G
Sbjct:   94 VFEYPDVWVCLYVDYGCDEWELEEECMTSATANRTGWGHSSAVYYPGGVYEQEIHVEEKLT-------------PNNGWCVEFQTSKITRFLGRERDAKYYLDYLLLDMYWYPGGLEVDSTTCVVE--GWKTHKQWMYVFLNDPVLGQVSTGIQVPYSCITNVSSSHSHTYVGIGVTTEDKLGQEPIVNNKALSVSTATVKDEVNPAIVK--PYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFKKSVNKGLGG 362
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.130e-80
Identity = 133/286 (46.50%), Postives = 179/286 (62.59%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISD--TDGGFTSATYQPG---ENQTNIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIV-QDPHLKPRKVWPSFVAGTEG 843
            ++ YPD+WVCL    GCD  +L  +C+ S +   T  G +SA Y PG   E + ++E  L                 GWCVEF+TS +   +  ER++  YLDY+++ MYWYPGG   +S TCV E  GW TH + +Y +L+DP++  VS  IQ+PY+C+TN S+SH FTY+GIGVT E +L  E   +  AL++ST   KDEV   +    PYA LSLQ QQE +S  +ITE+DPLD+AE+ G +GGFWDL++I+WP+FFVA   QDPHLKPR    S   G  G
Sbjct:  126 VFEYPDIWVCLYVAYGCDEWELENECMTSATGNRTGWGNSSAVYYPGGVYEQEIHVEGKLT-------------PNNGWCVEFQTSKITRFLDRERDAKYYLDYLLLDMYWYPGGLEADSNTCVVE--GWKTHNQWMYVFLNDPESERVSTGIQVPYSCITNVSSSHSFTYVGIGVTIEDKLGQEPIVNNKALSVSTATVKDEVNPAIVK--PYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKSVTKGLGG 394
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 7.280e-79
Identity = 131/286 (45.80%), Postives = 177/286 (61.89%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISD--TDGGFTSATYQPG---ENQTNIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIV-QDPHLKPRKVWPSFVAGTEG 843
            ++ YPD+WVCL    GCD  +L E+C+ S +   T  G +SA Y PG   E + ++E                    GWCVEF+TS +   +G ER++  +LD++++ MYWYPGG   +STTCV E  GW TH + +Y +L+DP    VS R+ +PY+C+TN S+SH FTY+GIG+T E +L  E   S  AL++ST   K EV   +    PYA LSLQVQQ  +S   ITE+DPLD+AE+ G +GGFWDL++I+WP+FFVA   QDPHLKPR    S   G  G
Sbjct:   54 VFEYPDIWVCLYADYGCDELELEEECMTSATANMTGWGNSSAVYYPGGEYEQEIHVEGRET-------------PDHGWCVEFQTSKITRFLGEERDASRFLDHLLLDMYWYPGGLETDSTTCVIE--GWKTHNQWMYVFLNDPALGQVSTRVPVPYSCITNVSSSHSFTYVGIGLTTEIKLGQEPIVSNKALSVSTATVKHEVNPAIVK--PYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPRNFKESVTKGLSG 322
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D8LNQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ3_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.800e-74
Identity = 129/293 (44.03%), Postives = 178/293 (60.75%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGENQTNI-EFSLPCQSMCFVAFIVACDQ--------RGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDP-DTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFV-AIVQDPHLKPRKVWPSFVAGTEGAA 849
            +Y YPD+W+C     GCD  +L E+CV+S   T+GG   A + P E    + + +   + +  +  +   D         RG CV FETSA    +G ER+S +YLDY+ + MYWYPGG  GNSTTCV E   W  H+E VY +LSDP D+  +S    L Y+C+TN S +H F  +GIG+T +++   +  SSY AL  +   HK+ V   V  + PYA+LSL+++Q++DS  +ITE +P + AE+ G IGGFWDL+LILWP+ FV A  QDPHLKPR    S + G E AA
Sbjct:   67 VYKYPDLWICPYVNYGCDAWELEEECVDSAWMTEGGEPDAVFYPREKLDQLHQVTTEERKIAAIPDLTNFDSEGNFVEDGRGHCVIFETSAATDFVGQERDSHEYLDYIHLDMYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDSTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNV--TMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVTATQQDPHLKPRTFKKSVIRGAERAA 357
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.660e-74
Identity = 129/295 (43.73%), Postives = 178/295 (60.34%), Query Frame = 1 
Query:    1 EIYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGENQTNIEFSLPCQSMCFVAFIVACDQ----------RGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDT-MVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIVQ-DPHLKPRKVWPSFVAGTEGAA 849
            E+Y +PD+W+CL    GCD  +L E+CVNS   T+GG  +A + P   Q + E  +  + +   A     D           RG CV F TSA    +G ER+  ++LDY+++ MYW PGG++G STTCV +   W  H+E VY +LSDPD    +S  + L Y+C+TN S +H F  MGIG+T++ +   +  SSY AL  +   HK+ V   + T  PYA+LSL+++Q+ DS  +ITE +P + AE+ G IGGFWDL+LILWP+ FVA  Q DPHLKPR    S V G E AA
Sbjct:   89 EVYKFPDLWICLYVNYGCDELELEEKCVNSAWTTEGGVPNAVFYP-RVQLDQEQEITTEQLQIEAIPENTDVDSEGNSLEDGRGKCVIFRTSAATAFVGQERDPHEFLDYILLDMYWNPGGTSGKSTTCVPDGVEWTDHREWVYGFLSDPDDPSAISTGVHLSYSCITNTSNTHTFNTMGIGLTQQKKFMDDDKSSYKALFTNFGVHKNVVNPNITT--PYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAA 380
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D8LNS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS2_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 5.470e-71
Identity = 130/295 (44.07%), Postives = 176/295 (59.66%), Query Frame = 1 
Query:    1 EIYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPG------ENQTNIEF---SLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYV-IVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDP-DTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIVQ-DPHLKPRKVWPSFVAGTEGAA 849
            E+Y +PD+W+CL    GCD  +L E CV+S   T+GG   A + P       +  T  E    ++P  +          D RG CV F+TSA    +G ER+  +YLDYV +  MYWYPGG  GNSTTCV +   W  H+E VY +LSDP D   +S    L Y+C+TN S +H F  +GIG+T +++   +  SSY AL  +   HK+ V   V  + PYA+LSL+++Q++DS  +ITE +P + AE+ G IGGFWDL+LILWP+ FVA  Q DPHLKPR    S + G E AA
Sbjct:   65 EVYKFPDLWICLFVNYGCDEWELEEGCVDSAWMTEGGVPDAVFYPRVKLDQLQETTTEELQIEAIPENTDYDSEGNYVEDGRGQCVIFKTSAATTFVGQERDPHEYLDYVHLDQMYWYPGGKFGNSTTCVVDGVEWADHREWVYGFLSDPEDPAAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNV--TMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVIRGAERAA 357
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.300e-70
Identity = 127/290 (43.79%), Postives = 181/290 (62.41%), Query Frame = 1 
Query:    4 IYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGE----NQTN-IEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDYVIVSMYWYPGGS-AGNSTTCVQEEGGWMTHKENVYAYLSDP-DTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIVQ-DPHLKPRKVWPSFVAGTEGAA 849
            +YTYPD+WVC     GCD   L   CV S  +T+ G  +A +   E    N T+ +E          +  IV    RG CVEF+TSA    +G ER+ D+YLDY+++ MYWYP G+   +STTCV++   W  H+E VYA+L+DP D  +VS  +QL Y+C+T+ S SH F  +GIG+T + + + +  SSY A++I++  +KD+    +  + PYA LS++++Q+ DS  +ITE DP + AEI+G IGGFWDLILILWP+FFVA  Q +P+LKPR    S     E A+
Sbjct:   54 VYTYPDLWVCPYNQYGCDDITLELGCVESSWETEAGPPNAIFYNSEGTDQNATDPLEIEATWVDTSAIEGIVK--GRGLCVEFKTSAATAFVGQERDPDEYLDYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAVQLSYSCITSASTSHVFNSVGIGLTNQIKYAADDVSSYKAVSINSGVYKDQADADI--TKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERAS 339
[Close]
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.750e-67
Identity = 111/221 (50.23%), Postives = 145/221 (65.61%), Query Frame = 1 
Query:  220 GWCVEFETSALEYDIGSERNSDDYLDYVIVS---------MYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDP---DTMVVSARIQLPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEVRNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLILILWPVFFVAIV-QDPHLKPRKVWPSFVAGTEG 843
            GWCVEFETS +   +G ERN+  YLDY+++          MYWYPGG+  +S TCV E  GW  H E +Y  L DP   ++ +VS  IQ+PY+C+TN S+SH FTY+GIGVT E  L  E  ++  AL++ST  H+D+V   +    PYA LSLQ QQE +S  VITE DP D+AE+ G +GGFWDL++++WP+FFVA   QDPHLKPR    S   G +G
Sbjct:   64 GWCVEFETSTISQFLGQERNASYYLDYLLLDVSMRKTLGDMYWYPGGTESDSNTCVVE--GWEPHSEWMYVKLKDPGYPESGLVSTGIQVPYSCITNVSSSHSFTYVGIGVTIEERLGEEPVATNKALSVSTATHRDKVNAAI--DKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLQG 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig793.15589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LMD2_ECTSI2.910e-8448.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FU23_ECTSI5.410e-8346.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K474_9PHAE1.430e-8248.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD1_ECTSI1.130e-8046.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JN97_9PHAE7.280e-7945.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ3_ECTSI1.800e-7444.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L518_9PHAE3.660e-7443.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNS2_ECTSI5.470e-7144.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXH8_ECTSI3.300e-7043.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6D1_9PHAE4.750e-6750.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig793contigH-elongata_contig793:9904..16189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size849
Cds size849
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig793.15589.1prot_H-elongata_contig793.15589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig793 9904..16189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.8843575-CDS-H-elongata_contig793:9903..101311622931197.8843575-CDS-H-elongata_contig793:9903..10131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 9904..10131 -
1691679737.7444847-CDS-H-elongata_contig793:9903..101311691679737.7444847-CDS-H-elongata_contig793:9903..10131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 9904..10131 -
1622931197.9032676-CDS-H-elongata_contig793:10610..107271622931197.9032676-CDS-H-elongata_contig793:10610..10727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 10611..10727 -
1691679737.7544475-CDS-H-elongata_contig793:10610..107271691679737.7544475-CDS-H-elongata_contig793:10610..10727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 10611..10727 -
1622931197.9209216-CDS-H-elongata_contig793:14091..142061622931197.9209216-CDS-H-elongata_contig793:14091..14206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 14092..14206 -
1691679737.7643065-CDS-H-elongata_contig793:14091..142061691679737.7643065-CDS-H-elongata_contig793:14091..14206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 14092..14206 -
1622931197.9490097-CDS-H-elongata_contig793:15298..153751622931197.9490097-CDS-H-elongata_contig793:15298..15375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 15299..15375 -
1691679737.772459-CDS-H-elongata_contig793:15298..153751691679737.772459-CDS-H-elongata_contig793:15298..15375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 15299..15375 -
1622931197.9777365-CDS-H-elongata_contig793:15698..158411622931197.9777365-CDS-H-elongata_contig793:15698..15841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 15699..15841 -
1691679737.7808685-CDS-H-elongata_contig793:15698..158411691679737.7808685-CDS-H-elongata_contig793:15698..15841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 15699..15841 -
1622931197.9973826-CDS-H-elongata_contig793:16020..161891622931197.9973826-CDS-H-elongata_contig793:16020..16189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 16021..16189 -
1691679737.789947-CDS-H-elongata_contig793:16020..161891691679737.789947-CDS-H-elongata_contig793:16020..16189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig793 16021..16189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig793.15589.1

>prot_H-elongata_contig793.15589.1 ID=prot_H-elongata_contig793.15589.1|Name=mRNA_H-elongata_contig793.15589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
EIYTYPDVWVCLETTCGCDTHDLGEQCVNSISDTDGGFTSATYQPGENQT
NIEFSLPCQSMCFVAFIVACDQRGWCVEFETSALEYDIGSERNSDDYLDY
VIVSMYWYPGGSAGNSTTCVQEEGGWMTHKENVYAYLSDPDTMVVSARIQ
LPYTCMTNESASHHFTYMGIGVTEEHELSGEKTSSYNALTISTVDHKDEV
RNGVFTSHPYAYLSLQVQQESDSRIVITEIDPLDVAEIIGQIGGFWDLIL
ILWPVFFVAIVQDPHLKPRKVWPSFVAGTEGAA
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mRNA from alignment at H-elongata_contig793:9904..16189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig793.15589.1 ID=mRNA_H-elongata_contig793.15589.1|Name=mRNA_H-elongata_contig793.15589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6286bp|location=Sequence derived from alignment at H-elongata_contig793:9904..16189- (Himanthalia elongata Himel1 dioecious)
GAAATTTATACCTACCCAGACGTGTGGGTGTGCCTAGAAACTACCTGTGG
CTGCGACACACATGATCTGGGAGAGCAATGCGTGAATTCCATTTCGGACA
CTGACGGTGGATTCACAAGCGCAACCTACCAACCGGGGGAAAATCAAACG
AATATTGAGTTTTCACTACGTCATGAAGAGGTGATATAGCAGCATGTAAA
GTAAGCAACGGAGTAAAGGTTTACTCAAGACTTCGCAAGTGCCGTCAACA
TACACGCGATTTCACTATAATAATTCACTTTGAGAAAATATTTATTGATA
TAAAATATATGCCTTATAATACTCAACGATCGTACTACCAAGCTTGAGCG
TGTCAATCGATGTGTTTTGTTGCTTTCATTGTCGCGTGTGACCAGCGTGG
CTGGTGTGTTGAGTTTGAGACGTCAGCTCTGGAATACGATATTGGGAGCG
AGCGGAATTCCGACGACTACCTGGACTATGTAATCGTCAGTGTAAGTTGC
AGGAAACATAGCGAAGTGTTAGGATTCACTGCACCGTGGCGAGTTGCTGT
ACTATCCATCGCCTCAACTTCTTCCCTTGTATCCGAACCGCAAAGGTTTA
TTTCAATTTCTCGTTGTTTTTGCTTATCTGGGGCATTGCTTTCGATCTTG
TTCGCTCCAGGGCGAAGAGAAACCTGAAAACAGCGCGCAGACTGCTCATG
CTTGCCCTGGTATTGCAATCCCAATATCTGGTTGATTCGCTGCACAAACG
CATTTTCCAGGTTTTCACCGTCTAAGCGCATTACGTTATAACACCGAACT
ATGCAACCTAATAGATGTACTGGTACCCTGGCGGTAGCGCGGGCAACTCG
ACCACGTGCGTCCAAGAGGAGGGTGGATGGATGACGCACAAGTAAGTGGA
ATGCATTCGTATTTTTTGTACCTAGGAACAAAGGACAGCGATTGTTTTTG
TTCCACAACGAAGGCGCCGATCTCTCTTTGTGCGGTTAGTACTATCACAG
GAGCTCTCAAGAGGGAAATGTTTGTTAGCTAAGTAGTACTTAGTTTCCTT
TTAAAGCATCATGCTAGGGGTTACACTTCCCTATAGATCTGCCGGCATTC
CGCCCTAGTTGAAGCACCGCACCGACTGTGCTGATATTATTTGCAAGACC
CTGCTATTCGAGTCCCCACGGGAAGGGTGACGACGCTCGTTACCATCCCG
TGAGCATTGCCCCCCAAGTAAGTATTTTATCGTGGGCTGGTCTTCTCTTC
CTTGGATGTCTGAGTTTGTATCACGATTGCACGTAGATAACTTTCTCTTG
TAAATATGGGGGAGCAAGGTGTGTTTTGAGCACCGTTTCTAAACATTTAG
AAGATAGGCTCACAAGGGCTTAGATCTTCCTGCGCTAAAGTGACATGAGT
TGGGGGAACGTTTCAAATGTATCCTAGACTTCTTACGCATATATAATGTA
TATATATATATATATACATATAATACCGTGAGTTGGAGATAGCACGAGGA
AAACAAACTGGTTGGGCACCCTAGGGTATACGCACCACACAAGGACATAT
ACAAGTCTAATCTATATCCCACAACCTATCGCGAAAATATGGGGCCGGTA
TCAAAAGGAAGCGCCAAACATATACGCGCACACAGCCAGTTGAATGCCCT
ACAACCTTCATAAAATGCACAACCTATCGCGAACGTGCTCGCAAAAACAC
TACCCCAAGGCGGGAGGTGATGGCCTTTGTTAGTCGATAATGCCAAGGCG
AGGTATACTCAGAACAGAAAATGGGGGAAATTATTGAGATGTTGCGTAAA
GTTATGGTAAACTGCATGTTAAATATCAGAGACCAGTTGCGTGATATTTA
GTTTAATGTGAATTTGATTATATTCCACGTTTGGTTTAAAATAACAAATA
TCTCTAGATCTTCCCAGTTGTCGTATAGGTAAGCATATAATTACGATGTT
CCGTCTGTTGTTTTCGAACTATTTCCCGCGCAGGGAGAATGTTTACGCCT
ATCTGAGCGATCCAGATACGATGGTGGTATCTGCAAGAATTCAACTACCG
TACACGTGTATGACGAATGAATCCGCCAGCCACCATTTCACATACATGGT
AGGTGCCGCTTAGGCCGAATTTTAGCGTATCTAAATATTTCCGAGGCATG
TCAGACCTTGGTTCAGGATCTTGATATGGTTTCTAGTTATAGTCGGCATT
CTGTAGGTTCGATAATACCCTAAAAGTGTTCGCGTGGAATGTAAAGCTAA
AGCATTGAAAATGATCATGCCTACTATTCAGCCTGGGTGGGAAAATTAAG
CGGGATAATGAAGGATGGAAAGGACAAACCCTTCACGCGAAACCAAATTA
TCAGGCGCGAATGGTGATAAGAAAAATATTTCCCTGCTCACCTGACCACG
AGCAGGATTGGTAACCATATTCGGTTGTTCCATATTTTACTGTTATATGT
GATGAGCACACATATATATATGCACACAAACGAAGCTCCATTAGGAGGAT
CAATGCTTGTAGCCTTGAAAGACTAGCATGACCGGGCCTGATTACGCGGT
TATGTGTAATTTAGCAAAGCGCACACACAAACACATACCATATCCACAGC
CGCAAGACCCGACGCCTCAGCGTAAACGTCGTGTCATGCGAATGCCCAGA
GTCCAGGGGCGGGAAGCAAGGGATGGGATCGTGGAGGGGAGAGGAGAGTC
AAAGAAGCGTAAGAGGGTGGAAAACAGGGAAGATTTGGGTAGAAACAGTA
AAACGCGTGGCCGGGAAAGCGTTGATCCAATATGGGCCGGCCGAAGCTAA
ATGGTGAACAAGCAGGTAGAAACGAAAGCACAAGGTGTTAATGGCTTGGA
TACGAAACTTAGAAATTTTATGACTCTATTTTCACGTCTGATTAGATGTT
TTTGTAGCAAATATGGTTTCATCCGCCATTGGGAGGATGAATGCGAGAAT
ATACTAAAATTACTAGCATGACAGAGCCGAATTGCGTGGTTATGTGCAAT
TTATATATAGTATATATATATACACGCACAGGTTTAGGGGGGTGCGGTAG
AAGGACGACATGATATTTGTGGAGAGAAATCTTAGGCGGGAGTCTGGGAT
AACACGATGCGGTGGAACTCGTCGGCGGGATACGCCAAGGTACTGGTTGC
CGGAAAGAGACCAGCCGTATTCATGTTATTTCGTGCACAAAGACGGGATT
GAGCTCCCTCACGCACAATCGAGTACTCTCCCACGCTCTGACTAGGTACC
TCTGCGAGGGAAAGACTCAGTATATCATCGAAGACACATGGCCGTTCCAA
AAGAGAGGTGTACAACAGGTTGGATACAACTCCGTAAATATGGACGTGGC
AACGGAGGCGGGGGTACGGTTCGAGAGTGACCATCGACACAAGGATAAGG
CGCTACTGCTTGATCTGGCCATTGCCAGCCCTTGTGGAAGCACCAGCCTT
GAGAACGCAGCACGCCAGGCTGGAAATCACCTCGCACGCAGTCGAGCGGA
AGAATAGGTATCGGGACTCGGTTCCCGCTACCTACTCGCTTCTCCCTCTT
TCTATGTCCACGTCTGGTGAAGTTGGTATAGACGTGCGTGCCTTCATGAA
GGAGCTAGCCGTCAGATGGGTGAAGAATAGCTCAGGGTCGCGCTTCAAGG
AGTCACGGCGGAGGGGACAGAAATAGCGCGTCTTACGCGGCAAGTTTCTT
TCGTCTTACAGAAGACACTGTCTTTCCCCTCGCGGCATTACCTCTGCAGA
CAGTGGGTGACCCCCACAAATAGACCAAACGCTCGTTTGAAAAACTCGGC
ATCTTCGAGACAAAATATTAGCCAGGAACTCCGGATGCAAGACCCAGCAC
CTGCCCAGCATTGTCGTACCCAGAGGCGAACCAGGTCACAAGGACTGGAA
GGAAAAGACGGTGACGAAAACATGGAGATACAGGGGGTCGCGTTTGTTGG
CAGCGGGAAGATTCGGGGGCAAACTCCGGCCCCTGCCCGACCATGCCATA
CCAAGTGGAGAACCGTACCTCAGGGACGGGAAGGAATGAACTATAACGAG
GATGCGGAAGTGGATACAAATAGTGATGGGAACGGGAACAGGGATATGAA
TGGCAACGGGAACATGGATAGGAATTAGCACGGGAACAGGGACGGAACCG
AGGACGGGGGAAAGGGACGTGGATAGGAAAGTGAAAGAGGACGGAGACGA
GGGCGGGGCCGAGGATGGGGATAAGGACGAGGAATAAGGAAGGAACGGGA
ACGAGGACGGTGATGGGGACATGAACGGTGGTGGAAACGGAAACGGGGAT
GTAGACTGGGGAGGGGACGACAACGGGGATAGCGATAGGGATGGAAGCGG
CGACGGAGATAGACATGGGGATAAGGACGGGGGCTGTAGAAGGGACGTAT
ACGGGCGCGGGGATGATAACAGGGACGGGGTTGGGAAGTGGGGAGGAGAC
ATAGACAGGAGCAGGAATAGGGATAAAGACGAGAACGGAGGGTGGGGTAG
ATGACAGAGAGAGTCTGTTTGTTTTTTAAAGGGTAGTCACATGGTCGCGA
ACATGTAATCTTCGTCCATGGCCGCAAGCCCCTATACCTCAGCAAGAACA
TCGTATCATGCGAATGTCCAGAGCCCAGGGGTGGGAATCAAGGGGAGAGG
AGGGTTGATGAAATGTAAGGCGGTAGAACACGAGCGATATTTGGTAAACA
TCAGTCAAAATAGTAAAGGGGAGGACGTTGGTCGAATAGGGGCCGACCGA
AACTATATAGCGAACAAGGAACCACAAATAAAAGTGAAAAAAAAATATGG
CTTAGATACGAAATGTATACAGATATAGATATGTTTATTTTTTCACGTCT
GATCAGAGGTGTGTGCAGCAAATATGATTGATCCCCCACTGGGACTAGCA
ATGTGTGTAGCCTAGAAGGATTGGCATGACAGGACCGGATTGCGCGGTCG
TGTGCAATTTAATAAATACATACACATGTACACACACATACGCTAGGAAG
CGCAAGGTATTGATGAGTTAGATACGAAATGTAGAGAGAGTATGTTTTCT
TTGTCATCTCTGGTCAGAGTTTTTTTTGTAGCAAATATAATTGAATCATC
TATTACGAGGACCGATACGAGAGTAGCCTCGAAAGACTAGTCTGACAGGG
ATGACTGCGCGATTATGTTCAATTAAAACACACACGCACACACACACAAA
TCCCCCATTGGGAGGGTTAATGCGAGAGTAGCCTAAAAGAGGTAGCACGA
CAGGGCCGGATTGCGCGGTTATGTGCAATTTCATACGTACACAATGCGTG
TAGCCACGAATAACGAGCATATCAGGGCCTGATTGCACGGTTATGCACAA
TTTAAAGCACACACAGTAACACTATACACAGAAGTAGAGAAGGCGGAATC
TGCTCTCCATTAATTTGAGCTAAACGATGGTGTTTGGTATAATTGTATTT
TTCAATCATCAGGGGATCGGCGTTACGGAAGAGCATGAACTCTCCGGAGA
AAAAACATCTTCGTATAATGCTCTCACTATATCAACGGTCGACCACAAAG
ACGAGGTACGAAATGGAGTTTTCACATCAGTAACAACATGGAGTCTGACC
GTTTTGCCTTCCCGCTTCGCCTGATGGCCTACTGTCTGTTCGTGCTAAAA
TTGAAGTTAAAGCACTGAAAAACGCGAAGTGAAACGTTTGGCGTAAAGGG
GTTAATTAACTAGGGCAGCTATCGCAGAGCAAAATGCGGTAGAACAGTTC
CGAGAACAAGCGAGATACAAGATAGGCGGTACTGGAGAACCGACACGTAA
GTATGCTTAAAATACTATTTGCAGATCCCAATGCTCTCGAGGAATACTCT
ACCTTGCATACAGCCCGCGGCGAAACTGTAGCGGGTGGTTCTAGCGGATC
TACGCTATTCGTGCATTGCGGCATTTTCCCGAAACGCTAACGATAAATAA
ATGGAGCGATGATGTCCGGCAACCTGGTAAACTCCTGCCCGCGTTTGCAT
GTTGCCCTTGTCCATTTTCGCACTCCGAAAGAGGGATGCCAGCATTACAG
GGATAGAGCACCCCTATGCGTATTTGTCCCTGCAAGTGCAACAAGAATCG
GATTCGAGGATCGTGATCACGGAAATCGATCCTCTCGATGTGGCCGAAAT
TATCGGTCAGATTGGAGGATTTTGGGATCTTATTCTGATTCTGTGGCCGG
TGTTCTTTGTAGCCATTGTCCAGGACCCACATCTGAAGCCTCGCAAAGTT
TGGCCGTCTTTTGTAGCAGGAACGGAGGGTGCCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig793:9904..16189-

>mRNA_H-elongata_contig793.15589.1 ID=mRNA_H-elongata_contig793.15589.1|Name=mRNA_H-elongata_contig793.15589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig793:9904..16189- (Himanthalia elongata Himel1 dioecious)
GAAATTTATACCTACCCAGACGTGTGGGTGTGCCTAGAAACTACCTGTGG
CTGCGACACACATGATCTGGGAGAGCAATGCGTGAATTCCATTTCGGACA
CTGACGGTGGATTCACAAGCGCAACCTACCAACCGGGGGAAAATCAAACG
AATATTGAGTTTTCACTACGAAATTTATACCTACCCAGACGTGTGGGTGT
GCCTAGAAACTACCTGTGGCTGCGACACACATGATCTGGGAGAGCAATGC
GTGAATTCCATTTCGGACACTGACGGTGGATTCACAAGCGCAACCTACCA
ACCGGGGGAAAATCAAACGAATATTGAGTTTTCACTACCGTGTCAATCGA
TGTGTTTTGTTGCTTTCATTGTCGCGTGTGACCAGCGTGGCTGGTGTGTT
GAGTTTGAGACGTCAGCTCTGGAATACGATATTGGGAGCGAGCGGAATTC
CGACGACTACCTGGACTATGTAATCGTCAGTCGTGTCAATCGATGTGTTT
TGTTGCTTTCATTGTCGCGTGTGACCAGCGTGGCTGGTGTGTTGAGTTTG
AGACGTCAGCTCTGGAATACGATATTGGGAGCGAGCGGAATTCCGACGAC
TACCTGGACTATGTAATCGTCAGTATGTACTGGTACCCTGGCGGTAGCGC
GGGCAACTCGACCACGTGCGTCCAAGAGGAGGGTGGATGGATGACGCACA
AATGTACTGGTACCCTGGCGGTAGCGCGGGCAACTCGACCACGTGCGTCC
AAGAGGAGGGTGGATGGATGACGCACAAGGAGAATGTTTACGCCTATCTG
AGCGATCCAGATACGATGGTGGTATCTGCAAGAATTCAACTACCGTACAC
GTGTATGACGAATGAATCCGCCAGCCACCATTTCACATACATGGGAGAAT
GTTTACGCCTATCTGAGCGATCCAGATACGATGGTGGTATCTGCAAGAAT
TCAACTACCGTACACGTGTATGACGAATGAATCCGCCAGCCACCATTTCA
CATACATGGGGATCGGCGTTACGGAAGAGCATGAACTCTCCGGAGAAAAA
ACATCTTCGTATAATGCTCTCACTATATCAACGGTCGACCACAAAGACGA
GGTACGAAATGGAGTTTTCACATCAGGGATCGGCGTTACGGAAGAGCATG
AACTCTCCGGAGAAAAAACATCTTCGTATAATGCTCTCACTATATCAACG
GTCGACCACAAAGACGAGGTACGAAATGGAGTTTTCACATCACACCCCTA
TGCGTATTTGTCCCTGCAAGTGCAACAAGAATCGGATTCGAGGATCGTGA
TCACGGAAATCGATCCTCTCGATGTGGCCGAAATTATCGGTCAGATTGGA
GGATTTTGGGATCTTATTCTGATTCTGTGGCCGGTGTTCTTTGTAGCCAT
TGTCCAGGACCCACATCTGAAGCCTCGCAAAGTTTGGCCGTCTTTTGTAG
CAGGAACGGAGGGTGCCGCACACCCCTATGCGTATTTGTCCCTGCAAGTG
CAACAAGAATCGGATTCGAGGATCGTGATCACGGAAATCGATCCTCTCGA
TGTGGCCGAAATTATCGGTCAGATTGGAGGATTTTGGGATCTTATTCTGA
TTCTGTGGCCGGTGTTCTTTGTAGCCATTGTCCAGGACCCACATCTGAAG
CCTCGCAAAGTTTGGCCGTCTTTTGTAGCAGGAACGGAGGGTGCCGCA
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