mRNA_H-elongata_contig79193.15580.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI) HSP 1 Score: 247 bits (630), Expect = 2.470e-73 Identity = 125/141 (88.65%), Postives = 134/141 (95.04%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEEV 447
A+RVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQ++L+APPGFFQK+VPVVV+ FG+ YPELREKEAFVMEIIK+EEEAFSSMLERGIKHFKEVE EQR KSS IPG TAFFLYDSMGFP+DLTQVMAEEV
Sbjct: 441 AYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYDSMGFPLDLTQVMAEEV 581
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A7S1H736_HEMAN (Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H736_HEMAN) HSP 1 Score: 187 bits (476), Expect = 4.730e-56 Identity = 91/140 (65.00%), Postives = 114/140 (81.43%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
A+RV+ADHAR L+FAITDGAVP+N+GRGYVLRRILRRAVRYGQ++L APPGFF +VPVVV F EA+PEL ++ FVME + +EEE+F ML GIK+F E+ + + + V+ G +AF+LYD+MGFPVDLTQVMAEE
Sbjct: 100 AYRVIADHARTLTFAITDGAVPSNEGRGYVLRRILRRAVRYGQQMLGAPPGFFTSLVPVVVDVFKEAFPELEGRKDFVMETLAEEEESFEKMLTSGIKYFNELSDDMKGRKETVVSGESAFYLYDTMGFPVDLTQVMAEE 239
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A1E7FNH4_9STRA (Alanine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNH4_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.240e-54 Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 1
Query: 10 TVYRCAFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
T+ A+RV+ADH R LSFAI DGAVP+N+GRGYVLRRILRRA RYGQ+IL+A PGFFQK++PVVV TFGEAYPEL + +A + EII +EE AFS+ML+RGIK F ++E E + + + G TAF+LYD++GFPVDLT++MAEE
Sbjct: 347 TLKDTAYRVIADHIRTLSFAIADGAVPSNEGRGYVLRRILRRATRYGQQILQAEPGFFQKLIPVVVKTFGEAYPELVKNQATITEIIAEEETAFSTMLDRGIKFFGDLEEEMKSEGKKEVSGETAFYLYDTLGFPVDLTELMAEE 491
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A7S1YSQ0_9STRA (Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSQ0_9STRA) HSP 1 Score: 193 bits (490), Expect = 3.310e-54 Identity = 93/145 (64.14%), Postives = 120/145 (82.76%), Query Frame = 1
Query: 10 TVYRCAFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
T+ A+R +ADHARALSFA+ DGAVP N+GRGYVLRRILRRA RYGQ+IL+A PGFF ++PVVV TFGEAYPEL + + ++EI+K+EEEAFS+ML+RGIK F E+E+E +E+ + G AFFLYD++GFP+DLT++MAEE
Sbjct: 368 TLRDTAYRAIADHARALSFALADGAVPNNEGRGYVLRRILRRATRYGQQILKAEPGFFATLIPVVVDTFGEAYPELVKNQDTILEIVKEEEEAFSTMLDRGIKFFTELESELKEEGKKQVTGDKAFFLYDTLGFPIDLTELMAEE 512
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A835ZLN6_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA) HSP 1 Score: 192 bits (489), Expect = 3.970e-54 Identity = 96/140 (68.57%), Postives = 117/140 (83.57%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
A+RVVADHAR L+FA+ DGAVP+N+GRGYVLRRILRRAVRYGQ+IL AP GFFQ++VPVVV +F A+PEL+ +EA + E++ +EE +FS MLERGIK EV+AEQR S +IPG AFFLYD+MGFPVDLTQ+MA E
Sbjct: 317 AYRVVADHARTLTFALADGAVPSNEGRGYVLRRILRRAVRYGQQILGAPEGFFQELVPVVVRSFSAAFPELKGQEAAIRELVTEEEASFSKMLERGIKFLGEVQAEQRASGSRLIPGDKAFFLYDTMGFPVDLTQLMAAE 456
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A448Z8F1_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8F1_9STRA) HSP 1 Score: 191 bits (484), Expect = 6.240e-54 Identity = 93/145 (64.14%), Postives = 116/145 (80.00%), Query Frame = 1
Query: 10 TVYRCAFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
T+ A+R +ADH R LSFAI DGAVP N+GRGYVLRRILRRA RYGQ+IL+A PGFFQK++PVVV TFGEAYPEL + +A + EII +EE AFS+ML+RGIK F E+E E + +PG AF+LYD++GFP+DLT++MAEE
Sbjct: 111 TLKDTAYRAIADHIRTLSFAIADGAVPNNEGRGYVLRRILRRATRYGQQILKAEPGFFQKLIPVVVETFGEAYPELVKNQATITEIIAEEEAAFSTMLDRGIKFFGELEEELKADGKSEVPGKKAFYLYDTLGFPIDLTELMAEE 255
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A7S3XMY7_HETAK (Alanine--tRNA ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMY7_HETAK) HSP 1 Score: 191 bits (484), Expect = 1.100e-53 Identity = 91/141 (64.54%), Postives = 119/141 (84.40%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEEV 447
A+RV+ADH R LSFAI DGAVP+N+GRGYVLRR+LRRAVR+GQ++L A GFFQ++VP V + FG+A+PELRE++A V +IK+EE+AFS++LERG+K+FKE+EAE + +PG AFFLYD++GFPVDLT +MAEEV
Sbjct: 356 AYRVLADHVRTLSFAIADGAVPSNEGRGYVLRRVLRRAVRFGQQLLGAERGFFQRLVPAVAAAFGDAFPELREQQAKVEAVIKEEEDAFSALLERGVKYFKEMEAELKAAGEARVPGDRAFFLYDTLGFPVDLTALMAEEV 496
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: K0SS72_THAOC (Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC) HSP 1 Score: 189 bits (480), Expect = 2.160e-53 Identity = 91/145 (62.76%), Postives = 120/145 (82.76%), Query Frame = 1
Query: 10 TVYRCAFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
T+ A+R VADHAR L+FA+ DGAVP N+GRGYVLRRILRRA RYGQ+IL+ PGFF K+VPVVV T+G+AYPEL++ +A ++EI+K+EEEAFS+ML+RGIK+F+E E + S ++ G AFFLYD++GFP+DLT++MAEE
Sbjct: 111 TLKDTAYRAVADHARTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFAKLVPVVVETYGDAYPELKQNQANIIEIVKEEEEAFSTMLDRGIKYFEE---EINDSKSKIVSGGQAFFLYDTLGFPIDLTELMAEE 252
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A7S0YZC8_9CRYP (Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YZC8_9CRYP) HSP 1 Score: 187 bits (475), Expect = 2.490e-52 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSGVIPGATAFFLYDSMGFPVDLTQVMAEE 444
A+RV+ADHAR L+FAITDGAVP+N+GRGYVLRRILRRAVRYGQ++L APPGFF +VPVVV F +A+PEL ++ FVME + +EEE+F ML GIK+F E+ + K V+ G +AF+LYD+MGFPVDLTQVMAEE
Sbjct: 309 AYRVIADHARTLTFAITDGAVPSNEGRGYVLRRILRRAVRYGQQMLGAPPGFFTSLVPVVVEAFKDAFPELEGRQDFVMETLAEEEESFEKMLTGGIKYFNELAEDMARKEDKVVSGESAFYLYDTMGFPVDLTQVMAEE 448
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Match: A0A7S2BHH8_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BHH8_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.660e-51 Identity = 89/141 (63.12%), Postives = 114/141 (80.85%), Query Frame = 1
Query: 25 AFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQEILEAPPGFFQKMVPVVVSTFGEAYPELREKEAFVMEIIKDEEEAFSSMLERGIKHFKEVEAEQREKSSG-VIPGATAFFLYDSMGFPVDLTQVMAEE 444
A+RV+ADH R L FAI D A P+N+GRGYVLRRILRRAVRYGQ++L A PGFF +VPV VSTF + YPEL EKEA ++EII DEE+AFS+M+ RG++HF ++ A+ +S G ++ G AFF+YDS+GFP+DLTQ+MAEE
Sbjct: 344 AYRVIADHLRTLCFAIADDARPSNEGRGYVLRRILRRAVRYGQQLLGAKPGFFANLVPVTVSTFSDFYPELAEKEALIVEIITDEEQAFSTMVSRGVRHFTQLVADMEGRSEGKLVSGEDAFFMYDSLGFPLDLTQLMAEE 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79193.15580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79193.15580.1 >prot_H-elongata_contig79193.15580.1 ID=prot_H-elongata_contig79193.15580.1|Name=mRNA_H-elongata_contig79193.15580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp MLYTVYRCAFRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGback to top mRNA from alignment at H-elongata_contig79193:558..2475- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79193.15580.1 ID=mRNA_H-elongata_contig79193.15580.1|Name=mRNA_H-elongata_contig79193.15580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1918bp|location=Sequence derived from alignment at H-elongata_contig79193:558..2475- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79193:558..2475- >mRNA_H-elongata_contig79193.15580.1 ID=mRNA_H-elongata_contig79193.15580.1|Name=mRNA_H-elongata_contig79193.15580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig79193:558..2475- (Himanthalia elongata Himel1 dioecious)back to top |