mRNA_H-elongata_contig79173.15577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79173.15577.1
Unique NamemRNA_H-elongata_contig79173.15577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A6H5KVQ9_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVQ9_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.300e-53
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 1 
Query:    4 QGASTVSHYPNVGTPEYQQERPSMRPSHSVLGVKRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            Q  S+  HYP+V  PE QQ+ PSM+PS    G +R++VLPSTLVAEFEKIAK NTD+PP+GIETCGILAG L+HN L MTTLIIPKQ GT NS  TTDETELFN+ML+ KLITLGWIHTHPKQ
Sbjct:  199 QSPSSAGHYPSVPQPESQQKPPSMQPSARGFGTERKVVLPSTLVAEFEKIAKPNTDKPPYGIETCGILAGKLTHNVLEMTTLIIPKQTGTSNSVETTDETELFNFMLSNKLITLGWIHTHPKQ 321
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A485LV41_9STRA (Aste57867_25268 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LV41_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.180e-30
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    7 GASTVSHYPNVGTPEYQQERPSMRPSHSVLGVKRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            G S  S +P     + Q  RPS R   S+    R L +PS+LVAEF +IA+ NT +PP+G+ETCGILAG L    L++TTLIIPKQ+G+ ++C  T+E +LF + +A+ L+TLGWIHTHP Q
Sbjct:  236 GVSYPSVHPEWMNADIQLGRPSFR---SMQDEVRALSVPSSLVAEFTRIAEPNTLKPPYGVETCGILAGTLKDQKLSITTLIIPKQQGSADTCTMTNEEDLFEFCIARDLLTLGWIHTHPSQ 354
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A7S3XHL2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHL2_HETAK)

HSP 1 Score: 116 bits (291), Expect = 3.690e-29
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:  103 KRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            KR L+LP +LVA F ++A  NT  PPHG+ETCGILAG +   +L +T LIIPKQE TPNSC  T E ELF+Y     L+TLGWIHTHP Q
Sbjct:  142 KRPLMLPDSLVAVFSEVAHPNTVTPPHGLETCGILAGKILEESLEVTHLIIPKQEATPNSCGMTHEDELFHYCFEHNLLTLGWIHTHPTQ 231
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A418DUK1_9STRA (MPN domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DUK1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.030e-28
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   88 SVLGVKRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            SV    R + +PS+LVAEF ++A  NT + P+G+ETCGILAG+L    L++TTLIIPKQEG+ ++C  T E +LF Y +   L+TLGWIHTHP Q
Sbjct:  107 SVEAAMRHMAIPSSLVAEFTRLAASNTSRLPYGVETCGILAGSLKDQRLSITTLIIPKQEGSSDTCTMTHEEDLFEYCIQHDLLTLGWIHTHPSQ 201
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A024U3I3_9STRA (MPN domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3I3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.510e-28
Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:   10 ASTVSHYPNVGTPEYQQERPSM----------RPSHSVLGVKRR-----LVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            ++T  H P V  P     RPS           R S     ++ R     + +PS+LVAEF +IA+ NT + PHG+ETCGILAG L   +L++TTLIIPKQEGT ++C  T E ELF Y +   L+TLGWIHTHP Q
Sbjct:  227 STTTFHAPPVSYPSLATARPSWLTTVGNGQTRRSSIQSKALRMRDEVRDMAIPSSLVAEFTRIAEPNTRRLPHGVETCGILAGTLKDQSLSITTLIIPKQEGTSDTCNMTHEEELFAYCIQHDLLTLGWIHTHPSQ 362
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A397B7M9_9STRA (MPN domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B7M9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.530e-27
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:  106 RRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            R + +PS+LVAEF ++A  NT + P+G+ETCGILAG+L    L++TTLIIPKQEG+ ++C  T E +LF Y +   L+TLGWIHTHP Q
Sbjct:  105 RHMAIPSSLVAEFTRLAASNTSRLPYGVETCGILAGSLKDQRLSITTLIIPKQEGSSDTCTMTHEEDLFEYCIQHDLLTLGWIHTHPSQ 193
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: W2H2I5_PHYPR (MPN domain-containing protein n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H2I5_PHYPR)

HSP 1 Score: 110 bits (276), Expect = 5.060e-27
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:   13 STVSHYPNVGTPEYQQERPSMRPSHSVLGVKRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            +T   + +   P   ++R     ++   G  R L +PS ++A+F  +A  NT++PP+GIETCGILAG L    L +TTLIIPKQEG+ + C  T+E EL+++  + +L+TLGWIHTHPKQ
Sbjct:  126 ATQPSHTHYSAPPLSRQRSQEAIANLTSGKIRTLEIPSGIIAQFTLLASPNTNRPPYGIETCGILAGILYDRKLIITTLIIPKQEGSSDMCTMTNEEELYDFCFSNELLTLGWIHTHPKQ 245
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A1V9Z2V7_9STRA (Metalloprotease family M67C n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2V7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.860e-27
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:    7 GASTVSHYPNVGTPEYQQERPSMRPSHSVLG----VKRRLVL----------PSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            G S  S  P +  P   Q  P + P H+ L     ++RR +L          P+ LV EF +IA  NT QPP+GIETCGIL G L    L +TTL+IPKQ G+ ++C  TDE ELF Y +A  L+TLGWIHTHP Q
Sbjct:  224 GRSAPSPTPALPPPRSMQPAP-LYPPHAALSRHEALERRTMLLKDEVRELSIPAMLVQEFIRIADPNTRQPPYGIETCGILTGTLKDQKLAITTLVIPKQTGSADTCTMTDENELFEYCIAHDLLTLGWIHTHPSQ 358
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: W2H2M5_PHYPR (MPN domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H2M5_PHYPR)

HSP 1 Score: 110 bits (276), Expect = 7.280e-27
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:   13 STVSHYPNVGTPEYQQERPSMRPSHSVLGVKRRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            +T   + +   P   ++R     ++   G  R L +PS ++A+F  +A  NT++PP+GIETCGILAG L    L +TTLIIPKQEG+ + C  T+E EL+++  + +L+TLGWIHTHPKQ
Sbjct:  126 ATQPSHTHYSAPPLSRQRSQEAIANLTSGKIRTLEIPSGIIAQFTLLASPNTNRPPYGIETCGILAGILYDRKLIITTLIIPKQEGSSDMCTMTNEEELYDFCFSNELLTLGWIHTHPKQ 245
[Close]
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Match: A0A6G0WED5_9STRA (MPN domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WED5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.370e-26
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:  106 RRLVLPSTLVAEFEKIAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDETELFNYMLAKKLITLGWIHTHPKQ 372
            R + +PS+LVAEF ++A+ NT  PPHG+ETCGILAG L    L++TTL+IPKQ+G+ ++C  T E ELF + +   L+TLGWIHTHP Q
Sbjct:  245 RMMSIPSSLVAEFTQLAEPNTLLPPHGVETCGILAGTLKDQELSITTLVIPKQQGSSDTCTMTHEEELFEFCIEHDLLTLGWIHTHPSQ 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79173.15577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVQ9_9PHAE1.300e-5372.36MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A485LV41_9STRA8.180e-3050.82Aste57867_25268 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3XHL2_HETAK3.690e-2961.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A418DUK1_9STRA1.030e-2854.74MPN domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A024U3I3_9STRA6.510e-2847.06MPN domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A397B7M9_9STRA1.530e-2756.18MPN domain-containing protein n=6 Tax=Aphanomyces ... [more]
W2H2I5_PHYPR5.060e-2745.00MPN domain-containing protein n=12 Tax=Phytophthor... [more]
A0A1V9Z2V7_9STRA6.860e-2747.06Metalloprotease family M67C n=1 Tax=Achlya hypogyn... [more]
W2H2M5_PHYPR7.280e-2745.00MPN domain-containing protein n=6 Tax=Phytophthora... [more]
A0A6G0WED5_9STRA1.370e-2656.18MPN domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79173contigH-elongata_contig79173:391..2875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D8LQD0
Preferred nameSTAMBP
KEGG koko:K11866,ko:K11867,ko:K12655
KEGG Pathwayko04144,ko04622,map04144,map04622
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0007049,GO:0007154,GO:0007165,GO:0007259,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008284,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0014066,GO:0014067,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019904,GO:0019941,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0031410,GO:0031593,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0035871,GO:0036211,GO:0036459,GO:0042127,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043412,GO:0043523,GO:0043524,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046578,GO:0046580,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051179,GO:0051234,GO:0051301,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060548,GO:0061578,GO:0061640,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097696,GO:0097708,GO:0098590,GO:0101005,GO:0120113,GO:0140030,GO:0140096,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1903047
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG2880@2759
EC3.4.19.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79173.15577.1prot_H-elongata_contig79173.15577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79173 391..2875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.4776108-CDS-H-elongata_contig79173:390..4951622931196.4776108-CDS-H-elongata_contig79173:390..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 391..495 -
1691679737.2799761-CDS-H-elongata_contig79173:390..4951691679737.2799761-CDS-H-elongata_contig79173:390..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 391..495 -
1622931196.5277772-CDS-H-elongata_contig79173:1191..12391622931196.5277772-CDS-H-elongata_contig79173:1191..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 1192..1239 -
1691679737.2898529-CDS-H-elongata_contig79173:1191..12391691679737.2898529-CDS-H-elongata_contig79173:1191..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 1192..1239 -
1622931196.55614-CDS-H-elongata_contig79173:2150..22801622931196.55614-CDS-H-elongata_contig79173:2150..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 2151..2280 -
1691679737.2977672-CDS-H-elongata_contig79173:2150..22801691679737.2977672-CDS-H-elongata_contig79173:2150..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 2151..2280 -
1622931196.578742-CDS-H-elongata_contig79173:2786..28751622931196.578742-CDS-H-elongata_contig79173:2786..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 2787..2875 -
1691679737.305749-CDS-H-elongata_contig79173:2786..28751691679737.305749-CDS-H-elongata_contig79173:2786..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79173 2787..2875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79173.15577.1

>prot_H-elongata_contig79173.15577.1 ID=prot_H-elongata_contig79173.15577.1|Name=mRNA_H-elongata_contig79173.15577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
NQGASTVSHYPNVGTPEYQQERPSMRPSHSVLGVKRRLVLPSTLVAEFEK
IAKHNTDQPPHGIETCGILAGNLSHNALNMTTLIIPKQEGTPNSCATTDE
TELFNYMLAKKLITLGWIHTHPKQ
back to top

mRNA from alignment at H-elongata_contig79173:391..2875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79173.15577.1 ID=mRNA_H-elongata_contig79173.15577.1|Name=mRNA_H-elongata_contig79173.15577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2485bp|location=Sequence derived from alignment at H-elongata_contig79173:391..2875- (Himanthalia elongata Himel1 dioecious)
AATCAGGGCGCCTCGACAGTGAGCCATTATCCAAACGTGGGCACGCCCGA
GTATCAGCAAGAACGGCCGTCGATGAGGCCCAGCCATAGGTGAGATGTCT
TTTTTTTTGTGATAAGAGTCGGGGGTAGAGAGCAATTTACGATACGATAA
AACGGTTTCAGGCGCTTTGCCACCCGGCCGGCCACCAAATAATTTATACG
GCAGGATCGACCCACGCAGTCTCAAGATTAAGAATGACCCTTTTTTATTT
AAAAAAAAAATGAACTCATTCCAACCCTCCGAACATCCACGCCTTCTAAG
CACCATGAGAGAGGTGCAGTCCAGGGGACCAACTATCGTTAGGTTCGAAT
GTGTACAATACTAACTTTGAGTACAAAATCTTCACACAAGATAAATCGTA
GTAAGTTAGTTCATTGGTTCGTGAGGTATGAAATACGTTACGTATGAAGT
TATTAGAGGGAGGTACGTGAGCTATTAAATTATTAGAGGGAAGGGGCGCT
GAAGGAATGGAGTAAGAATATATAGATATATATATATTAATTACTTTTTT
TTACTTTTTTCCCCGGCCGGGGTGGAATCAAACCAATGAAAGCAGCGTTC
TCGGCGTGAAGAGGAGACTTGTGCTGCCCTCCACGCTGGTGGCGGAGTTC
GAGAAAATTGCGAAGCATAACACGGATCAGCCTCCGCACGGCATCGAAAC
CTGCGGGATCCTCGCCGGAAACCTGGTGAGCCGCCGGCTCGTTTTGGTTT
CGCCGGTGGGGCCCATACTATTGCGAGCAGGTCGCCGCGTGAGGGAACAT
CGTACCGTCGTATATACTATTTTAGTACTGTAACTGGATCGAGACTTGAA
GCGCTCGCGTCAGCGCTTCGTCTCACGGGACATCCCTGTCTATATCTTTC
TTGGAGATACCTTATTCTTGTTGAAGATACCCTATTGTTGAAGATACCAT
ACTCTTCTTGAAGATACCCTACTCATGTTGAAGATACCCTATCCTTATTT
TTTAAAAAAATGAGCTCATTCCAACCCTCCGAATATCCACACCTTCTTAG
CGCCGTGAGAGGTGCAGCAGTCCAGGGGACAAACTATCGTCGGGTTCGAA
TGTGTACATTACTGGCTTTGAGCCCAAGATCGTCACGCGTGATTAATCGT
GTTCCCCGATAGTGAGTTTATCGGGTCAACGGAATAATGTCAGGGATCTA
TCCCATTATTATCCCGTACACTTTACATTATTACATTATTCATGACGTCA
TGTGGGGACTATGATGCCAAAACAAATAGTGAATTGTAGAAGGAGAGGAT
GTGTTGGAGAGGGGACGGGAATAAGTGACACTATGAGGTGTGGGATACAT
TGATCAGTCTACATAGAAACTATTGCAGGAAGATATTAAGTTAGTATAGT
TTTTAAAGGGTATAGGGAAGTTCAGGAAATTGTTGCATTGTACATATATC
TCGATTGAAATGCCCTATTCTTCCCTTCGTGAAGATATCCTACCTTCCTT
GGGATATACTTTTGCCTTTCTTGGAAGATACCCTTTTTTTAAAGATATAT
ATTATTAGATGCAAAACTCCTGACGTCCCGTCCCCCCGACTCGTCGCTCT
GATGCCCTGCCTTCTGATCCAACCGAATATATCCAGTCGCACAACGCGCT
GAACATGACCACCCTCATCATCCCCAAGCAAGAGGTAATGATGTCTCATA
AGATACAGTAGTTTGCATGACAGTTGTAAGAAGTATGTTGGGTTTCTCTT
CTAAGAGGCGTGCTCCGCTCTCGGTAACGCTAAACCCGAGGTTTCTTTGC
CTCAAAACGGGACCGCGAAGCTAGCTTAGCAGAGACCGCTTTTTTAGCGT
AAAATGGACCGTCGGCCCGATTGATACCATACACCCCACGCCGATCAAAC
TATTCTAACAACCTGCACGACGACGACCAGCTGTAAATCAGTGTCCCGAA
TTCGAAACTCGGTGAAATATCGTTTGTTCGCCAGAAATCTTGTAAGTATG
GTTTAATCTATTGGTTAACACGATCGGTGAAATCTATTGTATGTGGCAGA
AAGCTTGTAAGAAGGGTTTAATCTATTGGTTAACGAGATGGCAGCAGGAG
TACTGAATTTGCATCGCGATGAACAAGGCGTAGGCGTTAACTAACCGGGG
ATAGATCGATTGATGACCCCCCCCCTTAGGACCACAGGCGGTAGGGATGG
GCAAGGCTACAGTTGGTGGGGTTAGTAATCTCCTACTAGCAAGTTGAATA
AATGGTTCCACTGGTAGTAACTGAGAGTTTTTTTGTGTTTTTTTTTAATT
CTCGCCGCTAGTGATCGTCGTCCCCGCATTTCCTCTTTTCCTCCCCGACC
CCATGGCCTGGTCTGGTTTGGTCTTGCCAGGGAACCCCCAACTCGTGCGC
AACGACCGACGAGACCGAGCTCTTCAACTACATGCTTGCGAAGAAGCTAA
TCACGCTGGGGTGGATCCACACTCACCCGAAGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig79173:391..2875-

>mRNA_H-elongata_contig79173.15577.1 ID=mRNA_H-elongata_contig79173.15577.1|Name=mRNA_H-elongata_contig79173.15577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig79173:391..2875- (Himanthalia elongata Himel1 dioecious)
AATCAGGGCGCCTCGACAGTGAGCCATTATCCAAACGTGGGCACGCCCGA
GTATCAGCAAGAACGGCCGTCGATGAGGCCCAGCCATAGAATCAGGGCGC
CTCGACAGTGAGCCATTATCCAAACGTGGGCACGCCCGAGTATCAGCAAG
AACGGCCGTCGATGAGGCCCAGCCATAGCGTTCTCGGCGTGAAGAGGAGA
CTTGTGCTGCCCTCCACGCTGGTGGCGGAGTTCGAGAAAATTGCGAAGCA
TAACACGGATCAGCCTCCGCACGGCATCGAAACCTGCGGGATCCTCGCCG
GAAACCTGCGTTCTCGGCGTGAAGAGGAGACTTGTGCTGCCCTCCACGCT
GGTGGCGGAGTTCGAGAAAATTGCGAAGCATAACACGGATCAGCCTCCGC
ACGGCATCGAAACCTGCGGGATCCTCGCCGGAAACCTGTCGCACAACGCG
CTGAACATGACCACCCTCATCATCCCCAAGCAAGAGTCGCACAACGCGCT
GAACATGACCACCCTCATCATCCCCAAGCAAGAGGGAACCCCCAACTCGT
GCGCAACGACCGACGAGACCGAGCTCTTCAACTACATGCTTGCGAAGAAG
CTAATCACGCTGGGGTGGATCCACACTCACCCGAAGCAGGGAACCCCCAA
CTCGTGCGCAACGACCGACGAGACCGAGCTCTTCAACTACATGCTTGCGA
AGAAGCTAATCACGCTGGGGTGGATCCACACTCACCCGAAGCAG
back to top