mRNA_H-elongata_contig79058.15566.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79058.15566.1
Unique NamemRNA_H-elongata_contig79058.15566.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79058.15566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79058contigH-elongata_contig79058:2412..2919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79058.15566.1prot_H-elongata_contig79058.15566.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79058 2556..2879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.9129744-UTR-H-elongata_contig79058:2411..25551622931194.9129744-UTR-H-elongata_contig79058:2411..2555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79058 2412..2555 +
1691679736.6971157-UTR-H-elongata_contig79058:2411..25551691679736.6971157-UTR-H-elongata_contig79058:2411..2555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79058 2412..2555 +
1622931194.974507-UTR-H-elongata_contig79058:2879..29191622931194.974507-UTR-H-elongata_contig79058:2879..2919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79058 2880..2919 +
1691679736.7190938-UTR-H-elongata_contig79058:2879..29191691679736.7190938-UTR-H-elongata_contig79058:2879..2919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79058 2880..2919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.94809-CDS-H-elongata_contig79058:2555..28791622931194.94809-CDS-H-elongata_contig79058:2555..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79058 2556..2879 +
1691679736.7118576-CDS-H-elongata_contig79058:2555..28791691679736.7118576-CDS-H-elongata_contig79058:2555..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79058 2556..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79058.15566.1

>prot_H-elongata_contig79058.15566.1 ID=prot_H-elongata_contig79058.15566.1|Name=mRNA_H-elongata_contig79058.15566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MVGIQVCYGWERELVFIFKEKTKAENSPMRRYDLVRLEKVATPPCVMNRI
HPPSTKRGTGRGTEMPHDASRAEPNAIQSKFDTDRSCFDYFPRNNFLRTY
ATRIVNP*
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mRNA from alignment at H-elongata_contig79058:2412..2919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79058.15566.1 ID=mRNA_H-elongata_contig79058.15566.1|Name=mRNA_H-elongata_contig79058.15566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=508bp|location=Sequence derived from alignment at H-elongata_contig79058:2412..2919+ (Himanthalia elongata Himel1 dioecious)
CTCTTTTTCAAATAGAAATTATTGTCGATCAAAAATGCGAAAGATCCCCC
CGGGCACGAAATTAACTTCGTATCTATACATTATTGTTATTAAAAATACT
ATTCCAGTAGTAAGCTACTATTATAATATGGTCGTGGACAGCATATGGTC
GGGATTCAGGTTTGTTATGGATGGGAGAGGGAGTTGGTTTTTATTTTTAA
AGAAAAAACGAAAGCCGAGAACTCTCCCATGAGGCGATACGATTTGGTTC
GGCTAGAGAAGGTTGCCACCCCACCATGCGTGATGAACCGCATCCACCCA
CCATCAACTAAACGAGGGACTGGACGAGGGACTGAAATGCCCCACGATGC
CTCAAGAGCGGAGCCAAACGCAATCCAATCAAAATTCGACACCGACCGTT
CCTGTTTCGATTATTTTCCAAGAAACAATTTTCTTCGTACGTACGCGACA
AGAATCGTTAATCCGTAAATCATGCAACAACATTCCGCGAAGAAGCGTTT
CTTAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig79058:2412..2919+

>mRNA_H-elongata_contig79058.15566.1 ID=mRNA_H-elongata_contig79058.15566.1|Name=mRNA_H-elongata_contig79058.15566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig79058:2412..2919+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGGGATTCAGGTTTGTTATGGATGGGAGAGGGAGTTGGTTTTTAT
TTTTAAAGAAAAAACGAAAGCCGAGAACTCTCCCATGAGGCGATACGATT
TGGTTCGGCTAGAGAAGGTTGCCACCCCACCATGCGTGATGAACCGCATC
CACCCACCATCAACTAAACGAGGGACTGGACGAGGGACTGAAATGCCCCA
CGATGCCTCAAGAGCGGAGCCAAACGCAATCCAATCAAAATTCGACACCG
ACCGTTCCTGTTTCGATTATTTTCCAAGAAACAATTTTCTTCGTACGTAC
GCGACAAGAATCGTTAATCCGTAAATGGTCGGGATTCAGGTTTGTTATGG
ATGGGAGAGGGAGTTGGTTTTTATTTTTAAAGAAAAAACGAAAGCCGAGA
ACTCTCCCATGAGGCGATACGATTTGGTTCGGCTAGAGAAGGTTGCCACC
CCACCATGCGTGATGAACCGCATCCACCCACCATCAACTAAACGAGGGAC
TGGACGAGGGACTGAAATGCCCCACGATGCCTCAAGAGCGGAGCCAAACG
CAATCCAATCAAAATTCGACACCGACCGTTCCTGTTTCGATTATTTTCCA
AGAAACAATTTTCTTCGTACGTACGCGACAAGAATCGTTAATCCGTAA
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