mRNA_H-elongata_contig7902.15565.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7902.15565.1
Unique NamemRNA_H-elongata_contig7902.15565.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7902.15565.1 vs. uniprot
Match: A0A6H5JFG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.570e-18
Identity = 55/115 (47.83%), Postives = 67/115 (58.26%), Query Frame = 2 
Query:  617 AVFKFMKNKWREVAVSDLNNIRIVFDAA---TTLDEEEASPQSAFPSKWPPSGRATLIWGMERSGESLARLFDSLPKPARARLCEEAFLDLTYTFVSGAVGPPPLDISSIWDDSP 952
            AVFKFM  KW EVA SDLN+IRIVFDA    T +    AS  +            T++WG E S   L  L  +LP PA  R+CEE  L L+YTF++G VGPPP   S+ WD +P
Sbjct:  738 AVFKFMVKKWSEVAYSDLNSIRIVFDADAGDTGVPTAAASTPALSQPXXXXXADRTVVWGAELSKRPLLDLVSALPGPALDRVCEEQALSLSYTFLTGPVGPPPSRGSAPWDAAP 852
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BLAST of mRNA_H-elongata_contig7902.15565.1 vs. uniprot
Match: D7FI25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI25_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.820e-6
Identity = 38/89 (42.70%), Postives = 44/89 (49.44%), Query Frame = 2 
Query:  617 AVFKFMKNKWREVAVSDLNNIRIVFDAATTLDEEEASPQSAFPSKWPPSGRA------TLIWGMERSGESLARLFDSLPKPARARLCEE 865
            AVFKFM  KW EVA SDLN+IRI+FDA        AS                     T++WG E S   L  L  +LP PA  R+CEE
Sbjct:  778 AVFKFMVKKWSEVAYSDLNSIRIIFDADAGDTGVPASSAXXXXXXXXXXXXXXXXADRTVVWGAELSKRPLLDLVSALPGPALDRVCEE 866
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7902.15565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFG9_9PHAE7.570e-1847.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI25_ECTSI3.820e-642.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7902contigH-elongata_contig7902:5757..7256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003250.1
Exons2
Model size1053
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7902.15565.1prot_H-elongata_contig7902.15565.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7902 6147..7256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.8141844-UTR-H-elongata_contig7902:5756..61461622931194.8141844-UTR-H-elongata_contig7902:5756..6146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7902 5757..6146 -
1691679736.6631021-UTR-H-elongata_contig7902:5756..61461691679736.6631021-UTR-H-elongata_contig7902:5756..6146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7902 5757..6146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.83448-CDS-H-elongata_contig7902:6146..61931622931194.83448-CDS-H-elongata_contig7902:6146..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7902 6147..6193 -
1691679736.6739094-CDS-H-elongata_contig7902:6146..61931691679736.6739094-CDS-H-elongata_contig7902:6146..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7902 6147..6193 -
1622931194.8603542-CDS-H-elongata_contig7902:6640..72561622931194.8603542-CDS-H-elongata_contig7902:6640..7256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7902 6641..7256 -
1691679736.684552-CDS-H-elongata_contig7902:6640..72561691679736.684552-CDS-H-elongata_contig7902:6640..7256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7902 6641..7256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7902.15565.1

>prot_H-elongata_contig7902.15565.1 ID=prot_H-elongata_contig7902.15565.1|Name=mRNA_H-elongata_contig7902.15565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
PGSGVSVAQRRDGLRQQSNNHLETPSSKSANALRESSREDPENVAESEEN
VWSGSMEASGASALRPLRDGTGDTPEAAPQDGQARRICHPDPGRTRSRPF
EDASVHIDVGIENRYAGETEENADTRTSCLTATTQSTTSGRGDSGVAGDR
SVAPKSTGGGGNNGVCSLSIHSALPNIFGVKGTTRSGDCVASDTDKRPRK
VAEAVGCFQVHEKQMERGGC*
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mRNA from alignment at H-elongata_contig7902:5757..7256-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7902.15565.1 ID=mRNA_H-elongata_contig7902.15565.1|Name=mRNA_H-elongata_contig7902.15565.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-elongata_contig7902:5757..7256- (Himanthalia elongata Himel1 dioecious)
CCTGGTTCAGGGGTATCAGTAGCGCAGAGACGCGATGGTCTGAGGCAACA
GAGTAATAACCACCTCGAAACCCCTTCCTCAAAATCTGCAAATGCTTTAC
GAGAAAGCTCAAGAGAAGACCCGGAAAACGTTGCAGAGTCGGAGGAGAAC
GTGTGGAGTGGATCGATGGAGGCCAGCGGTGCGTCGGCGCTTCGACCGTT
ACGTGACGGCACGGGGGATACACCGGAAGCGGCCCCACAAGATGGTCAGG
CGAGGAGGATATGCCACCCAGATCCAGGTCGCACGAGATCGCGTCCATTT
GAAGATGCTTCCGTCCATATCGACGTCGGCATCGAAAATCGCTATGCAGG
CGAGACGGAGGAGAACGCAGATACACGCACGTCGTGTCTGACAGCGACAA
CCCAGTCGACCACGTCCGGTAGAGGGGATTCGGGTGTAGCAGGAGACAGA
TCGGTCGCCCCGAAGAGTACTGGTGGGGGTGGGAATAATGGTGTGTGTTC
TCTATCGATCCACTCAGCGCTGCCGAACATTTTCGGGGTCAAGGGTACCA
CTCGAAGCGGGGACTGTGTCGCGTCAGACACTGATAAGAGACCAAGAAAA
GTCGCGGAGGCCGTGGGTTCCCCACTTTGCCCTTTGCCGAGGAAAGTTTC
TCTAAGATTCGTGCCCCGGGAGAAATCAACCCAGCAAAAAGTGGCGGAGC
GAGGTTACCTTCCTTTCCAAAAGCTCACGGCTCCGGTAAGTTCGCCATGT
GGTGACACTCTATGCCGTTATGAATTTGGCAGGGATTGTGGTAGGGGCAT
CATCAAGGCTGCTCCTTAGCGTTTCAATTAATACGACCTGGACGTCGAAA
TACACCAGGTAGCTCGCTCTGACATTCGTCACGTGGTTGATGTTCGGTAG
TTTCCGATCAAATCATCCTCTCAACTCTCCATGTGTATTCCAAAAGTCAT
CGCCAGCATCGGTCACCCTTTCTTGCATTCTCCTCCTGGAATAATCCCCT
CCCCCATCTTCCTCAAACACACGCACGCACTCTCGGCTTCAACAGCTATC
GAAACCCCTCGAGGCTGTTTTCAAGTTCATGAAAAACAAATGGAGAGAGG
TGGCTGTTAGCGACCTGAACAACATCCGCATCGTCTTCGACGCAGCCACA
ACCCTCGACGAGGAGGAAGCCTCACCGCAAAGCGCGTTTCCAAGCAAATG
GCCGCCCTCTGGCCGCGCGACCCTCATCTGGGGCATGGAGCGCAGCGGCG
AGTCCCTCGCCCGTCTTTTCGATTCTCTCCCGAAGCCCGCGCGCGCACGA
CTTTGCGAGGAGGCATTCTTGGATCTAACTTACACATTTGTTTCCGGTGC
TGTCGGCCCGCCCCCACTCGATATATCGTCGATATGGGACGACTCTCCCG
GTCATCCCGCCATAACTTCAACCACAGCGCGGCGATTAACACCCTTGTCA
ACGGACTGTAGCAGCAAACCGGAAGCGAGAGCCGCGCCGTTTTCCTTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig7902:5757..7256-

>mRNA_H-elongata_contig7902.15565.1 ID=mRNA_H-elongata_contig7902.15565.1|Name=mRNA_H-elongata_contig7902.15565.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig7902:5757..7256- (Himanthalia elongata Himel1 dioecious)
CCTGGTTCAGGGGTATCAGTAGCGCAGAGACGCGATGGTCTGAGGCAACA
GAGTAATAACCACCTCGAAACCCCTTCCTCAAAATCTGCAAATGCTTTAC
GAGAAAGCTCAAGAGAAGACCCGGAAAACGTTGCAGAGTCGGAGGAGAAC
GTGTGGAGTGGATCGATGGAGGCCAGCGGTGCGTCGGCGCTTCGACCGTT
ACGTGACGGCACGGGGGATACACCGGAAGCGGCCCCACAAGATGGTCAGG
CGAGGAGGATATGCCACCCAGATCCAGGTCGCACGAGATCGCGTCCATTT
GAAGATGCTTCCGTCCATATCGACGTCGGCATCGAAAATCGCTATGCAGG
CGAGACGGAGGAGAACGCAGATACACGCACGTCGTGTCTGACAGCGACAA
CCCAGTCGACCACGTCCGGTAGAGGGGATTCGGGTGTAGCAGGAGACAGA
TCGGTCGCCCCGAAGAGTACTGGTGGGGGTGGGAATAATGGTGTGTGTTC
TCTATCGATCCACTCAGCGCTGCCGAACATTTTCGGGGTCAAGGGTACCA
CTCGAAGCGGGGACTGTGTCGCGTCAGACACTGATAAGAGACCAAGAAAA
GTCGCGGAGGCCGTGGCCTGGTTCAGGGGTATCAGTAGCGCAGAGACGCG
ATGGTCTGAGGCAACAGAGTAATAACCACCTCGAAACCCCTTCCTCAAAA
TCTGCAAATGCTTTACGAGAAAGCTCAAGAGAAGACCCGGAAAACGTTGC
AGAGTCGGAGGAGAACGTGTGGAGTGGATCGATGGAGGCCAGCGGTGCGT
CGGCGCTTCGACCGTTACGTGACGGCACGGGGGATACACCGGAAGCGGCC
CCACAAGATGGTCAGGCGAGGAGGATATGCCACCCAGATCCAGGTCGCAC
GAGATCGCGTCCATTTGAAGATGCTTCCGTCCATATCGACGTCGGCATCG
AAAATCGCTATGCAGGCGAGACGGAGGAGAACGCAGATACACGCACGTCG
TGTCTGACAGCGACAACCCAGTCGACCACGTCCGGTAGAGGGGATTCGGG
TGTAGCAGGAGACAGATCGGTCGCCCCGAAGAGTACTGGTGGGGGTGGGA
ATAATGGTGTGTGTTCTCTATCGATCCACTCAGCGCTGCCGAACATTTTC
GGGGTCAAGGGTACCACTCGAAGCGGGGACTGTGTCGCGTCAGACACTGA
TAAGAGACCAAGAAAAGTCGCGGAGGCCGTGGGCTGTTTTCAAGTTCATG
AAAAACAAATGGAGAGAGGTGGCTGTTAGGCTGTTTTCAAGTTCATGAAA
AACAAATGGAGAGAGGTGGCTGTTAG
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