mRNA_H-elongata_contig78997.15562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78997.15562.1
Unique NamemRNA_H-elongata_contig78997.15562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A836CKF2_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.860e-45
Identity = 72/119 (60.50%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW YD PYYMDAL+++Q+   +G I+HLGLTNFD++ L+ ITDKG+ + SNQ     VQYS+LD RP  +M  LC E G++LLCYGT+LGG LS+KW+G PAP+KA F TVS++K
Sbjct:  181 LQFHWWDYDSPYYMDALHHMQDMVAEGSIRHLGLTNFDTQRLQLITDKGINVVSNQ-----VQYSMLDTRPAARMQDLCTECGIQLLCYGTLLGGFLSDKWVGKPAPAKAQFETVSQQK 294          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A350YDP9_9CYAN (Aldo/keto reductase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350YDP9_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 6.020e-41
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y  P Y+DALNY+ E +++GKIKHL LTNFD++HL+ ITD G+KI SNQ     VQYS++D+RP   M + C E  +KLL YGT+ GGLLSEK+LG P P  A+ +TVS RK
Sbjct:  123 LQFHWWEYRDPNYLDALNYMVELQQEGKIKHLALTNFDTEHLKIITDAGIKIVSNQ-----VQYSLIDRRPEVNMVQFCEENDIKLLTYGTLCGGLLSEKYLGQPEPRGAELATVSLRK 236          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A3N5V343_9ARCH (Aldo/keto reductase n=1 Tax=Nitrosopumilales archaeon TaxID=2026768 RepID=A0A3N5V343_9ARCH)

HSP 1 Score: 146 bits (369), Expect = 1.090e-40
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y+ PYYMDAL YL + R+KG IKHLGLTNFD+ HL+ ITD GV IASNQ     VQYSI+D+RP  +M   C +  + LL YG++ GGLLSE+++G P PS  D +T+S +K
Sbjct:  120 LQFHWWDYNNPYYMDALKYLSDLRDKGSIKHLGLTNFDTDHLQIITDSGVPIASNQ-----VQYSIIDRRPEVKMIPFCRKHNISLLTYGSICGGLLSERYVGKPEPSITDLNTLSLQK 233          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: UPI00101C1DDB (aldo/keto reductase n=1 Tax=Candidatus Chloroploca sp. Khr17 TaxID=2496869 RepID=UPI00101C1DDB)

HSP 1 Score: 145 bits (365), Expect = 4.610e-40
Identity = 70/119 (58.82%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y  P Y+ AL++L E RE+G I HL LTNFD++ L EI D+G+ I SNQ     VQYS++D RP +QMA+LC ERGV LL YGT+ GGLLSE+++G P PS+AD +T S+RK
Sbjct:  122 LQFHWWEYADPGYLTALDHLAELRERGWIAHLALTNFDTQRLREILDRGIPIVSNQ-----VQYSLVDLRPSRQMAQLCAERGVGLLAYGTLCGGLLSERYVGAPEPSRADLTTASQRK 235          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: UPI001881B4F2 (aldo/keto reductase n=1 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001881B4F2)

HSP 1 Score: 145 bits (365), Expect = 4.710e-40
Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            +QFHWW Y  P Y+DAL Y+ E +E+GKIKHL LTNFD++HL+ ITD G+KI SNQ     VQYS++D+RP   M K C E+ +KL  YGT+ GGLLSEK+LGHP P   + +T S RK
Sbjct:  123 MQFHWWEYRDPSYLDALKYMTELQEEGKIKHLALTNFDTEHLKIITDAGIKIVSNQ-----VQYSLIDRRPEVSMVKFCQEQDIKLFTYGTLGGGLLSEKYLGHPEPKGTEVTTASLRK 236          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A432HXD9_9ARCH (Aldo/keto reductase n=6 Tax=cellular organisms TaxID=131567 RepID=A0A432HXD9_9ARCH)

HSP 1 Score: 144 bits (363), Expect = 9.160e-40
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y+ P Y DAL +L   RE+GKI+HL LTNFD++HL +ITD+G+++ SNQ     VQYS++D+RP  QMA+ C E  +KLL YGTV GGLLS+++LG PAPS A  +T S  K
Sbjct:  123 LQFHWWDYNDPRYTDALTHLASLREEGKIRHLALTNFDTEHLRQITDQGIRVVSNQ-----VQYSLIDRRPMIQMAQYCQEHDIKLLAYGTVCGGLLSKRYLGQPAPSGAALNTASLHK 236          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A3N5RRC4_9ARCH (Aldo/keto reductase n=1 Tax=Nitrosopumilales archaeon TaxID=2026768 RepID=A0A3N5RRC4_9ARCH)

HSP 1 Score: 143 bits (360), Expect = 2.560e-39
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y+ PYYMDAL YL + + KG I+HLGLTNFD++HL+ IT+ G+ IASNQ     +QYSI+D+RP  +M   C +  + LL YGT+ GGLLSEK+LG P P  +D  T+S +K
Sbjct:  123 LQFHWWDYNNPYYMDALKYLSDLKAKGNIRHLGLTNFDTEHLQMITESGIAIASNQ-----IQYSIIDKRPEVKMIPFCKKHNISLLTYGTLCGGLLSEKYLGKPEPPISDLDTLSLQK 236          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: UPI0019D8B3C1 (Aldo/keto reductase n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019D8B3C1)

HSP 1 Score: 142 bits (358), Expect = 5.190e-39
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y    Y+DAL Y+ E +E+GKIK+LGLTNFD+ HL+ I D G+KI SNQ     VQ+SI+D+RP QQM K C E  +KLL YGTV GGLLSEK+LG P P +A  +T S  K
Sbjct:  123 LQFHWWEYRDQNYLDALRYMTELQEEGKIKYLGLTNFDTSHLKIILDCGIKIVSNQ-----VQFSIIDRRPEQQMIKFCLEHNIKLLAYGTVCGGLLSEKYLGQPEPKRAMLATASLNK 236          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A521TT64_9ARCH (Aldo/keto reductase n=1 Tax=Nitrosarchaeum sp. TaxID=2026886 RepID=A0A521TT64_9ARCH)

HSP 1 Score: 139 bits (350), Expect = 6.770e-38
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            +QFHWW Y+ P Y+DALN+L + R++GKIKHLGLTNFD++ ++ + +KG K+ SNQ     VQYSILDQRP + MA  C + G+ LL YGT+LGG LSEK+L  P P +AD  T S +K
Sbjct:  116 VQFHWWDYNNPSYLDALNHLSKLRDEGKIKHLGLTNFDTQRIKIMIEKGFKLVSNQ-----VQYSILDQRPEKLMAPFCQKHGISLLTYGTLLGGFLSEKYLNSPDPHRADLVTSSLQK 229          
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Match: A0A3M1PPA6_9CYAN (Aldo/keto reductase n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PPA6_9CYAN)

HSP 1 Score: 139 bits (350), Expect = 8.040e-38
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 LQFHWWAYDMPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARGQGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSKADFSTVSERK 357
            LQFHWW Y    Y+DAL ++ + + +GKI+HL LTNFD++HL+ I D G++I SNQ     VQYS++D+RP   MAKLC ERGV LL YGT+ GG LSE++LG P P ++D +TVS++K
Sbjct:  123 LQFHWWDYRDRGYLDALKHMTDLQTEGKIRHLALTNFDTEHLQIILDSGIRIVSNQ-----VQYSLVDRRPEAYMAKLCQERGVHLLTYGTLCGGFLSERYLGKPEPRRSDLATVSQQK 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78997.15562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKF2_9STRA1.860e-4560.50Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
A0A350YDP9_9CYAN6.020e-4158.82Aldo/keto reductase n=2 Tax=unclassified Cyanobact... [more]
A0A3N5V343_9ARCH1.090e-4057.98Aldo/keto reductase n=1 Tax=Nitrosopumilales archa... [more]
UPI00101C1DDB4.610e-4058.82aldo/keto reductase n=1 Tax=Candidatus Chloroploca... [more]
UPI001881B4F24.710e-4057.14aldo/keto reductase n=1 Tax=unclassified Coleofasc... [more]
A0A432HXD9_9ARCH9.160e-4057.14Aldo/keto reductase n=6 Tax=cellular organisms Tax... [more]
A0A3N5RRC4_9ARCH2.560e-3955.46Aldo/keto reductase n=1 Tax=Nitrosopumilales archa... [more]
UPI0019D8B3C15.190e-3958.82Aldo/keto reductase n=1 Tax=Oscillatoriaceae cyano... [more]
A0A521TT64_9ARCH6.770e-3855.46Aldo/keto reductase n=1 Tax=Nitrosarchaeum sp. Tax... [more]
A0A3M1PPA6_9CYAN8.040e-3854.62Aldo/keto reductase n=1 Tax=Cyanobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78997contigH-elongata_contig78997:71..1267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.1
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog1469607.KK073768_gene4729
EggNOG free text desc.PFAM aldo keto reductase
EggNOG OGs1G1XK@1117,1HISY@1161,COG0667@1,COG0667@2
COG Functional cat.C
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78997.15562.1prot_H-elongata_contig78997.15562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78997 98..1267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.4636939-UTR-H-elongata_contig78997:70..971622931194.4636939-UTR-H-elongata_contig78997:70..97Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78997 71..97 +
1691679736.5572195-UTR-H-elongata_contig78997:70..971691679736.5572195-UTR-H-elongata_contig78997:70..97Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78997 71..97 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.4927258-CDS-H-elongata_contig78997:97..2531622931194.4927258-CDS-H-elongata_contig78997:97..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78997 98..253 +
1691679736.5704317-CDS-H-elongata_contig78997:97..2531691679736.5704317-CDS-H-elongata_contig78997:97..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78997 98..253 +
1622931194.521068-CDS-H-elongata_contig78997:1093..12671622931194.521068-CDS-H-elongata_contig78997:1093..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78997 1094..1267 +
1691679736.5782945-CDS-H-elongata_contig78997:1093..12671691679736.5782945-CDS-H-elongata_contig78997:1093..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78997 1094..1267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78997.15562.1

>prot_H-elongata_contig78997.15562.1 ID=prot_H-elongata_contig78997.15562.1|Name=mRNA_H-elongata_contig78997.15562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MPYYMDALNYLQETREKGKIKHLGLTNFDSKHLEEITDKGVKIASNQARG
QGVQYSILDQRPGQQMAKLCNERGVKLLCYGTVLGGLLSEKWLGHPAPSK
ADFSTVSERK
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mRNA from alignment at H-elongata_contig78997:71..1267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78997.15562.1 ID=mRNA_H-elongata_contig78997.15562.1|Name=mRNA_H-elongata_contig78997.15562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-elongata_contig78997:71..1267+ (Himanthalia elongata Himel1 dioecious)
CTCCAGTTCCATTGGTGGGCGTACGACATGCCATACTATATGGACGCCCT AAACTACCTCCAGGAGACGAGGGAGAAGGGAAAGATAAAGCATCTAGGCC TCACGAACTTCGACTCCAAACATCTAGAAGAGATCACGGACAAGGGAGTC AAGATCGCGTCCAATCAGGCACGTGGGCAAGGGGTGATGGACTGTGATTT TTTGTTTTTCTTTTAGTTTTTTCTTTTCGCCGAGACAATGTTTGGATACG CAGAAGCACATCGGCAGGCGACAACTTGTGTGTGTGTGTGTGTGTGTGTG TGTGTACGTACGGGAAAATATCGTGGTGATTGATGTCTAGTTATCATCGA CCAGCGGCGTCTTGGAATAGACAAGACCACGACCTACGGCTTCTTGGAGA AATGCGGGTCTGTTTTGTGTACCAAACGGAACGCCGAGTTTGTTTGATTG ATTATTCCAAACGGCACACGGTATGGGTAACTACACCAGTGATTAGGTAA GCAGGTAGGTGGGTCGGTAGATATATAGGTAGGTCGTCGTTGCGTTTAGT ATTTTGTCGATCACCAATAAATCGCTCTTACCCCTTCCTACTCCCCCCAC CCTCACCTATTATAGTCTCTTGGTCCATTTCCTGACGTCGATTCGGTAGT TCCAGCTCCCCTTTAATGAAATCTTCCCCCACCCCCTTCGATGCCCGACA CCCGTCCCCCCTCCAGCCTTAGACAGAAAAATGCGTTTTCCTTTAATCGT GTTCGGTTTTCCTGGCCTCTCTTTTTTTCTTGTATGAATTTTCTCTGGCC CCAGAATGATTCATATTGGATAATAAAAAATGAATCACCGGTAATGAAAA TAACGAACAGTGAAAGTCACGAATAAACGAAAATCACGGACAAGAAACAA TTACGAGCAACGAAAGTCGCGAATAACGAGCAAAGAAAATCACGAATCAC GAATAACGGCTAGTGAATCACGAACAAACGAATCACGAACAACGGCTAGT GAATCACGAACCCGTCAAACCAGGTCCAGTACAGCATCCTCGACCAGCGT CCCGGGCAGCAAATGGCCAAGCTTTGCAACGAACGCGGGGTGAAGCTCTT GTGCTACGGCACTGTACTGGGGGGGCTTCTCTCGGAGAAGTGGCTGGGAC ACCCCGCGCCGTCGAAGGCCGACTTCTCCACCGTTTCGGAGAGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig78997:71..1267+

>mRNA_H-elongata_contig78997.15562.1 ID=mRNA_H-elongata_contig78997.15562.1|Name=mRNA_H-elongata_contig78997.15562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig78997:71..1267+ (Himanthalia elongata Himel1 dioecious)
ATGCCATACTATATGGACGCCCTAAACTACCTCCAGGAGACGAGGGAGAA
GGGAAAGATAAAGCATCTAGGCCTCACGAACTTCGACTCCAAACATCTAG
AAGAGATCACGGACAAGGGAGTCAAGATCGCGTCCAATCAGGCACGTGGG
CAAGGGATGCCATACTATATGGACGCCCTAAACTACCTCCAGGAGACGAG
GGAGAAGGGAAAGATAAAGCATCTAGGCCTCACGAACTTCGACTCCAAAC
ATCTAGAAGAGATCACGGACAAGGGAGTCAAGATCGCGTCCAATCAGGCA
CGTGGGCAAGGGGTCCAGTACAGCATCCTCGACCAGCGTCCCGGGCAGCA
AATGGCCAAGCTTTGCAACGAACGCGGGGTGAAGCTCTTGTGCTACGGCA
CTGTACTGGGGGGGCTTCTCTCGGAGAAGTGGCTGGGACACCCCGCGCCG
TCGAAGGCCGACTTCTCCACCGTTTCGGAGAGAAAGGTCCAGTACAGCAT
CCTCGACCAGCGTCCCGGGCAGCAAATGGCCAAGCTTTGCAACGAACGCG
GGGTGAAGCTCTTGTGCTACGGCACTGTACTGGGGGGGCTTCTCTCGGAG
AAGTGGCTGGGACACCCCGCGCCGTCGAAGGCCGACTTCTCCACCGTTTC
GGAGAGAAAG
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