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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1511 |
| Cds size | 1023 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931194.329135-UTR-H-elongata_contig78989:5..347 | 1622931194.329135-UTR-H-elongata_contig78989:5..347 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig78989 6..347 - |
| 1691679736.5089555-UTR-H-elongata_contig78989:5..347 | 1691679736.5089555-UTR-H-elongata_contig78989:5..347 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig78989 6..347 - |
| 1622931194.3805792-UTR-H-elongata_contig78989:1985..2131 | 1622931194.3805792-UTR-H-elongata_contig78989:1985..2131 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig78989 1986..2131 - |
| 1691679736.5366058-UTR-H-elongata_contig78989:1985..2131 | 1691679736.5366058-UTR-H-elongata_contig78989:1985..2131 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig78989 1986..2131 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931194.3488474-CDS-H-elongata_contig78989:347..1285 | 1622931194.3488474-CDS-H-elongata_contig78989:347..1285 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig78989 348..1285 - |
| 1691679736.517019-CDS-H-elongata_contig78989:347..1285 | 1691679736.517019-CDS-H-elongata_contig78989:347..1285 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig78989 348..1285 - |
| 1622931194.3643997-CDS-H-elongata_contig78989:1900..1985 | 1622931194.3643997-CDS-H-elongata_contig78989:1900..1985 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig78989 1901..1985 - |
| 1691679736.5264983-CDS-H-elongata_contig78989:1900..1985 | 1691679736.5264983-CDS-H-elongata_contig78989:1900..1985 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig78989 1901..1985 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78989.15560.1 >prot_H-elongata_contig78989.15560.1 ID=prot_H-elongata_contig78989.15560.1|Name=mRNA_H-elongata_contig78989.15560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=341bp
MIQGLRTDGARAPAVGTVASSSSSTTLIGDDGSSRGDGTGLFDGIDTYAS
PRAPQHAAEEFGSRGSVDGGVVSRESTTVFDLSPLIKEPRASAGDEDAAA
FTGNQAAAAAAATADDEIDKIFSSDGVGHHDHKSGNGNRYQPFLVPSEHN
PVDDDDYNDFLSSPRDRGIVASVAGVASAGLDSTAGAAHIPPRGGCGDSL
FPDDDDNFRGNTEHDDDNIFSSPTAPKEGVVASYAGRGAKGLTATAFGGG
SDQKDLGGDDFGTSLFDRPEFSLEAVDDDDDADAAGRNVFGGLSGPEIAE
DRSGASSFLTALEDSAVVSQKQDRGQNGAPGRDGMVEVSL* back to topmRNA from alignment at H-elongata_contig78989:6..2131- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig78989.15560.1 ID=mRNA_H-elongata_contig78989.15560.1|Name=mRNA_H-elongata_contig78989.15560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2126bp|location=Sequence derived from alignment at H-elongata_contig78989:6..2131- (Himanthalia elongata Himel1 dioecious)
AGGAGGAAACCGGCGATCGGAGCAGCCTTTTCGGAAGCCTAGGTGCCGCG
TTGCCGGCGGGCGGAAGCGTTTTTGATGATGGTGGCAGCAGTAGGAGCAG
CGGCGTCGGTGGCAATCATTCGTCCGCTTCCGCTCCTGCTTCGGCGATGA
TTCAGGGTCTTCGGACGGACGGGGCCAGGGCTCCTGCCGTAGGCACGGTT
GCGTCGTCGTCATCGTCGACGACTTTGATCGGTGAGCCCGCGGCCCGCGT
CTTCGATGGGCGTCGTTTTTGTTAATGAGTACAACTCTTCGTTCCCGTGC
GTGCGTGCGTTCGTTATGGGCGGCAAATCTCTTAAAGTTGTCATAGTCGG
ATCCTGGTGTTGAGTCGCTCTTGGCATCCCGGCCGGTGGGTTTTTTTTTG
TCGGCATTTATAGTCTATAGAGAGAGAGAGAGAGAGAGAGACTGCAGCGT
TCTCTCGACACAGTAGATCCAAAACATGCAAACAATGCGTAAAGGTTTGA
AGGTCATTTGCCTGATTTTCCAAGCAGGCGGCCTATGTACACGACTGCAT
TATTACCTTTTTTTTAAAAAGAATGGTGCGTTTTTTGTTTTGTTTTCTTT
TTTGGTCTCCAATCCTCAGGAAGTCAGGGGTAAAAAATGCCCAAGTCACT
TTCCATCGTCGAGGTCTACCATAGCATGGATCTCGTTCAAGCGATTTCTT
GAAGATGAGGGTAATGACGTCAGAGCAGTGTCCCCCGTTCGGTATTAAAA
CATCCCCCGTGTAGTCCACTGTCTTCTAGCTCGACTCAGTACACGAGGCA
CCCTTAACGTATGTATTTGTCTTTCTCGTTTTTCTGGCCTTGTCAGGTGA
TGACGGAAGCAGCAGAGGAGACGGGACCGGTCTGTTTGACGGAATCGATA
CGTATGCCTCCCCTCGCGCACCACAGCATGCTGCGGAAGAGTTCGGGAGC
CGGGGCAGCGTCGATGGCGGTGTCGTCTCCAGAGAATCGACAACGGTCTT
TGATCTGTCGCCCTTGATCAAAGAGCCTCGGGCGTCCGCTGGTGATGAGG
ATGCTGCCGCTTTCACGGGCAACCAGGCAGCAGCAGCGGCAGCAGCAACA
GCAGACGACGAGATCGATAAAATTTTCAGCAGCGATGGAGTTGGGCATCA
CGACCACAAGAGCGGAAATGGCAATAGGTACCAGCCGTTTCTTGTACCGA
GCGAGCACAACCCCGTGGACGACGACGACTACAACGACTTCCTCTCGTCT
CCTCGTGATCGTGGCATCGTCGCGTCTGTCGCCGGTGTTGCTTCCGCCGG
GCTCGACTCGACCGCCGGCGCTGCTCACATCCCCCCCCGCGGCGGTTGCG
GCGATTCTCTCTTCCCAGATGACGACGACAATTTCCGCGGTAACACTGAA
CACGATGATGACAATATTTTCTCGTCTCCCACGGCACCCAAAGAAGGCGT
CGTCGCATCGTACGCCGGGCGCGGCGCGAAGGGACTGACGGCGACGGCCT
TCGGGGGTGGGTCGGATCAGAAGGACCTCGGCGGCGACGACTTCGGCACG
AGCCTCTTCGACCGGCCGGAGTTCTCGCTCGAGGCCGTTGATGACGACGA
CGACGCTGACGCCGCCGGGAGAAACGTGTTCGGCGGCCTCAGCGGACCAG
AGATTGCGGAAGATAGGAGCGGCGCGTCGTCGTTCTTGACGGCTCTTGAA
GACTCTGCTGTGGTGTCCCAGAAGCAAGATCGAGGGCAAAATGGTGCTCC
GGGCAGAGATGGCATGGTGGAGGTGAGCTTGTGATCCTTCCAGGGGAAGA
GAGACAAGCGAGCCAGAGACGACTCTCAAAAGATTATTAGAGAGCAGGCA
CTCGTTTCGAGCCCAGCCGTGTATCGCACACAGCTTCTTGCGCCTTGCGC
CTTAAGCTATCATACCAAAAGGCGTACGTGCGTGCTTGCTTCCGTGGACA
AGAATTTCTCGACTTGGGAACCTTGGATGGACTTGACGTCCTTAGCGGTC
ATGCTTCTCGAAACGAAATCGGGAGTGCCATGTTTTGTAGGTCCGCGGCT
CCGAGGGCTGTTTGTTGAGATCCCGCCTTCGTACAATAATGGTCAGGAAA
AAAATGTTTTGAGCACTACAGCATCA back to topCoding sequence (CDS) from alignment at H-elongata_contig78989:6..2131- >mRNA_H-elongata_contig78989.15560.1 ID=mRNA_H-elongata_contig78989.15560.1|Name=mRNA_H-elongata_contig78989.15560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2046bp|location=Sequence derived from alignment at H-elongata_contig78989:6..2131- (Himanthalia elongata Himel1 dioecious)
ATGATTCAGGGTCTTCGGACGGACGGGGCCAGGGCTCCTGCCGTAGGCAC
GGTTGCGTCGTCGTCATCGTCGACGACTTTGATCGATGATTCAGGGTCTT
CGGACGGACGGGGCCAGGGCTCCTGCCGTAGGCACGGTTGCGTCGTCGTC
ATCGTCGACGACTTTGATCGGTGATGACGGAAGCAGCAGAGGAGACGGGA
CCGGTCTGTTTGACGGAATCGATACGTATGCCTCCCCTCGCGCACCACAG
CATGCTGCGGAAGAGTTCGGGAGCCGGGGCAGCGTCGATGGCGGTGTCGT
CTCCAGAGAATCGACAACGGTCTTTGATCTGTCGCCCTTGATCAAAGAGC
CTCGGGCGTCCGCTGGTGATGAGGATGCTGCCGCTTTCACGGGCAACCAG
GCAGCAGCAGCGGCAGCAGCAACAGCAGACGACGAGATCGATAAAATTTT
CAGCAGCGATGGAGTTGGGCATCACGACCACAAGAGCGGAAATGGCAATA
GGTACCAGCCGTTTCTTGTACCGAGCGAGCACAACCCCGTGGACGACGAC
GACTACAACGACTTCCTCTCGTCTCCTCGTGATCGTGGCATCGTCGCGTC
TGTCGCCGGTGTTGCTTCCGCCGGGCTCGACTCGACCGCCGGCGCTGCTC
ACATCCCCCCCCGCGGCGGTTGCGGCGATTCTCTCTTCCCAGATGACGAC
GACAATTTCCGCGGTAACACTGAACACGATGATGACAATATTTTCTCGTC
TCCCACGGCACCCAAAGAAGGCGTCGTCGCATCGTACGCCGGGCGCGGCG
CGAAGGGACTGACGGCGACGGCCTTCGGGGGTGGGTCGGATCAGAAGGAC
CTCGGCGGCGACGACTTCGGCACGAGCCTCTTCGACCGGCCGGAGTTCTC
GCTCGAGGCCGTTGATGACGACGACGACGCTGACGCCGCCGGGAGAAACG
TGTTCGGCGGCCTCAGCGGACCAGAGATTGCGGAAGATAGGAGCGGCGCG
TCGTCGTTCTTGACGGCTCTTGAAGACTCTGCTGTGGTGTCCCAGAAGCA
AGATCGAGGGCAAAATGGTGCTCCGGGCAGAGATGGCATGGTGGAGGTGA
GCTTGTGAGTGATGACGGAAGCAGCAGAGGAGACGGGACCGGTCTGTTTG
ACGGAATCGATACGTATGCCTCCCCTCGCGCACCACAGCATGCTGCGGAA
GAGTTCGGGAGCCGGGGCAGCGTCGATGGCGGTGTCGTCTCCAGAGAATC
GACAACGGTCTTTGATCTGTCGCCCTTGATCAAAGAGCCTCGGGCGTCCG
CTGGTGATGAGGATGCTGCCGCTTTCACGGGCAACCAGGCAGCAGCAGCG
GCAGCAGCAACAGCAGACGACGAGATCGATAAAATTTTCAGCAGCGATGG
AGTTGGGCATCACGACCACAAGAGCGGAAATGGCAATAGGTACCAGCCGT
TTCTTGTACCGAGCGAGCACAACCCCGTGGACGACGACGACTACAACGAC
TTCCTCTCGTCTCCTCGTGATCGTGGCATCGTCGCGTCTGTCGCCGGTGT
TGCTTCCGCCGGGCTCGACTCGACCGCCGGCGCTGCTCACATCCCCCCCC
GCGGCGGTTGCGGCGATTCTCTCTTCCCAGATGACGACGACAATTTCCGC
GGTAACACTGAACACGATGATGACAATATTTTCTCGTCTCCCACGGCACC
CAAAGAAGGCGTCGTCGCATCGTACGCCGGGCGCGGCGCGAAGGGACTGA
CGGCGACGGCCTTCGGGGGTGGGTCGGATCAGAAGGACCTCGGCGGCGAC
GACTTCGGCACGAGCCTCTTCGACCGGCCGGAGTTCTCGCTCGAGGCCGT
TGATGACGACGACGACGCTGACGCCGCCGGGAGAAACGTGTTCGGCGGCC
TCAGCGGACCAGAGATTGCGGAAGATAGGAGCGGCGCGTCGTCGTTCTTG
ACGGCTCTTGAAGACTCTGCTGTGGTGTCCCAGAAGCAAGATCGAGGGCA
AAATGGTGCTCCGGGCAGAGATGGCATGGTGGAGGTGAGCTTGTGA back to top
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