mRNA_H-elongata_contig78978.15559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78978.15559.1
Unique NamemRNA_H-elongata_contig78978.15559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.370e-13
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK   HG +  L + D NNKI+ V+  + DKE+  +Y + L+   ++       +S ++T +IDGHKGSP AL+  LP A
Sbjct:  164 MDAGHLKGSWHGVMYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRAVLPQA 248
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5KQH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.420e-12
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G L+    G +  L + + NNKI+ V+  + DKE+  +Y + L+   ++       +S ++T +IDGHKGSP AL+  LP A
Sbjct:    4 MDAGHLRDSWKGVMYALCMHNSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRPVLPQA 88
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BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.770e-12
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK    G +  L + D NNKI+ V+  + DKE+  +Y + L+   ++       +S ++T FIDGHKGSP AL+  LP A
Sbjct:  250 MDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLPQA 334
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5KCE5_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCE5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.310e-12
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK    G +  L + D NNKI+ V+  + DKE   +Y + L+   ++       +S ++T FIDGHKGSP AL+  +P A
Sbjct:    4 MDAGHLKGSWKGVMYFLCMHDSNNKIIHVSTVLADKEIATNYRFLLQQTFRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQA 88
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.820e-11
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            +D+G L+   +G +  L + D NNKI  V+  + DKE+ A+Y + L+   ++       +S ++T +IDGHKGSP AL+  LP A
Sbjct:   20 LDAGHLRGSWNGVMYVLCMHDSNNKITHVSTVLADKENAANYKFLLQEICQNEHMQRLLSSGEVTFYIDGHKGSPAALRVVLPQA 104
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.450e-11
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK    G +  L + D NNKI+ V   + DKE+  +Y + L+   ++       +S ++T  IDGHKGSP AL+  +P A
Sbjct:   82 MDAGHLKGSWKGVMYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVIDGHKGSPAALRAVVPQA 166
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.970e-11
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK    G +  L + D NNKI+  +  I DKE   ++ + L+   ++       +S ++T FIDGHKGSP AL+  +P A
Sbjct:   28 MDAGHLKGSWKGVMYVLCMHDSNNKIIHFSTVIADKEHATNFKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQA 112
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5KDH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.690e-10
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQL-TTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA 255
            MD+G LK    G +   L + +  NKI+ V   + DKE+  +Y + L+   ++       +S ++T FIDGHKGSP AL+  +P A
Sbjct:    4 MDAGHLKGSWKGVMYDVLCMHESKNKIIHVNTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQA 89
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-8
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   49 LGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLP 249
            L + D NNKI+ V+  + DKE+  +Y + L+   ++       +S ++T FIDGHKGSP AL+  LP
Sbjct:    4 LCMHDSNNKIIHVSTVLADKENATNYKFLLQQICRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLP 70
[Close]
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Match: UPI001ABC6C57 (uncharacterized protein LOC109780584 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC6C57)

HSP 1 Score: 52.8 bits (125), Expect = 4.920e-6
Identity = 32/84 (38.10%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    1 MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDGHKGSPPALKKCLPN 252
            +D  F+K     Q+     RD NN I  +AFAIVDKED AS+++FL   +K A    +    + TI  D  KG   A+    PN
Sbjct:   81 VDGCFVKLTTGQQILAATGRDGNNNIFPIAFAIVDKEDTASWSWFLTQ-LKYALGGESGKYGNYTIISDRQKGLLKAINNVFPN 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78978.15559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G6Q0_ECTSI2.370e-1340.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KQH4_9PHAE1.420e-1236.47MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JC04_9PHAE1.770e-1240.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCE5_9PHAE5.310e-1238.82MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FMJ7_ECTSI1.820e-1137.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9F2_9PHAE6.450e-1137.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K7Q3_9PHAE6.970e-1137.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KDH4_9PHAE9.690e-1036.05MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9J4_9PHAE1.290e-840.30MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI001ABC6C574.920e-638.10uncharacterized protein LOC109780584 n=1 Tax=Aegil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78978contigH-elongata_contig78978:562..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.268417-CDS-H-elongata_contig78978:561..8191622931194.268417-CDS-H-elongata_contig78978:561..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78978 562..819 -
1691679736.5001435-CDS-H-elongata_contig78978:561..8191691679736.5001435-CDS-H-elongata_contig78978:561..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78978 562..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78978.15559.1prot_H-elongata_contig78978.15559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78978 562..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78978.15559.1

>prot_H-elongata_contig78978.15559.1 ID=prot_H-elongata_contig78978.15559.1|Name=mRNA_H-elongata_contig78978.15559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MDSGFLKTYHHGQLTTLGVRDDNNKILLVAFAIVDKEDEASYTYFLRNCM
KSAAFASTFNSADMTIFIDGHKGSPPALKKCLPNA*
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mRNA from alignment at H-elongata_contig78978:562..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78978.15559.1 ID=mRNA_H-elongata_contig78978.15559.1|Name=mRNA_H-elongata_contig78978.15559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig78978:562..819- (Himanthalia elongata Himel1 dioecious)
ATGGACTCGGGATTCTTGAAGACGTATCACCATGGGCAGCTCACCACGTT
GGGCGTGAGGGATGACAACAACAAGATCCTGCTCGTAGCTTTCGCCATAG
TCGATAAGGAGGACGAGGCCAGCTATACGTACTTCCTGCGCAACTGCATG
AAAAGTGCGGCCTTTGCTTCCACGTTCAACAGCGCTGACATGACCATCTT
CATCGACGGCCACAAGGGTTCCCCTCCCGCTCTCAAGAAGTGCCTCCCGA
ACGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig78978:562..819-

>mRNA_H-elongata_contig78978.15559.1 ID=mRNA_H-elongata_contig78978.15559.1|Name=mRNA_H-elongata_contig78978.15559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig78978:562..819- (Himanthalia elongata Himel1 dioecious)
ATGGACTCGGGATTCTTGAAGACGTATCACCATGGGCAGCTCACCACGTT
GGGCGTGAGGGATGACAACAACAAGATCCTGCTCGTAGCTTTCGCCATAG
TCGATAAGGAGGACGAGGCCAGCTATACGTACTTCCTGCGCAACTGCATG
AAAAGTGCGGCCTTTGCTTCCACGTTCAACAGCGCTGACATGACCATCTT
CATCGACGGCCACAAGGGTTCCCCTCCCGCTCTCAAGAAGTGCCTCCCGA
ACGCGTAGATGGACTCGGGATTCTTGAAGACGTATCACCATGGGCAGCTC
ACCACGTTGGGCGTGAGGGATGACAACAACAAGATCCTGCTCGTAGCTTT
CGCCATAGTCGATAAGGAGGACGAGGCCAGCTATACGTACTTCCTGCGCA
ACTGCATGAAAAGTGCGGCCTTTGCTTCCACGTTCAACAGCGCTGACATG
ACCATCTTCATCGACGGCCACAAGGGTTCCCCTCCCGCTCTCAAGAAGTG
CCTCCCGAACGCGTAG
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