mRNA_H-elongata_contig78957.15558.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: D7G7V3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V3_ECTSI) HSP 1 Score: 388 bits (996), Expect = 7.440e-127 Identity = 192/274 (70.07%), Postives = 225/274 (82.12%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRAESVESPLRSLGAETLTLAIDDALAPKM--KLESAVPQLPGLAIATRK 818
RG+FYPGVFQFSLEL+RYRVPSWQ PLSVAVLTARAREFLFALEI DTHEI++ FR CG+RNG+K WGRGPVLYGSVKEW+CPSRKS+RK +NF L+E D +GGRGRP+GAEGGYIF+GDTGEGDPRAGE+M+ +P+RMRAVFLHVVSD +QG+V VP DR VN VP+VYFRTYVGAA KAVELGLMDK GLENVI AAKE + VP +SSKW D+ DL+ A++ E+ L S+G +TLT A+DDAL K+ K AV + P + A K
Sbjct: 127 RRGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAMTKVPRQSSKWEDINRDLMMAQTSETQLPSIGVKTLTSALDDALGSKINTKRNGAVRRRPPVTTAATK 400
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A835YMG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG4_9STRA) HSP 1 Score: 236 bits (603), Expect = 3.080e-70 Identity = 125/232 (53.88%), Postives = 155/232 (66.81%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVV---SDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLV--NVPAKSSKWSDMMTDLVRA 683
RG FYPGVFQF LELA + VP PL +AVLTARA+E LFALE+ H +S +R CG NG++ WG GP+LYGSVKEWIC +RKS RK KNFR+L+E DG+ R E Y+F+GDTGEGD +AG M E +P +RA+FLH+V D K VPED VNGVP+++F+TYVGAA KA E GL+++ +E VI A E L P SSKWSD+ D+ A
Sbjct: 35 ERGQFYPGVFQFGLELAAHGVPRGLMPLPIAVLTARAKELLFALELDMEHPVSVAYRQCGAENGMEGWGLGPILYGSVKEWICWTRKSRRKVKNFRRLMELDGRNAIARGYMTE--YVFIGDTGEGDFKAGIKMCENFPRELRALFLHMVYCVDDVCK-----VPEDYAVNGVPVLFFKTYVGAARKAYEAGLLNRYAVERVIAKAVEELEYSGAPRTSSKWSDLEADIEAA 259
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A835YPL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL0_9STRA) HSP 1 Score: 234 bits (597), Expect = 7.110e-69 Identity = 122/229 (53.28%), Postives = 152/229 (66.38%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAA--KETLVNVPAKSSKWSDMMTDLVRA 683
RG FYPGVFQF+LELA + P PL VAVLTARA+EFLFALE+ H +S +R CG NG WG GPVLYGSVKEWI +RK RKFKNF++L+E DG R G YIF+GDTGEGD +AG M E +P +RA+F+H VS + P+D T+NGVP+++F+TYVGAA KA E GLMDK+G++ VI + + L P SKW DM D+ +A
Sbjct: 68 ERGQFYPGVFQFALELAAHGTPQGLLPLPVAVLTARAKEFLFALELKTEHPVSIAYRQCGTDNGFDGWGLGPVLYGSVKEWIVWTRKGRRKFKNFKRLMEIDGTHAAAR--GCATDYIFIGDTGEGDTKAGVKMCETFPRELRAMFMHAVSCDSEY--CITPDDYTINGVPVLFFKTYVGAARKAYEAGLMDKAGVQRVIDRSVMELELSGAPRDCSKWEDMEMDIEQA 292
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A7S0UKK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKK8_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.260e-60 Identity = 112/228 (49.12%), Postives = 146/228 (64.04%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRAE 686
+RG FYPGV +F L L++ + P ++A+LTARA EF ALEI + +++ R G++ G+ WG GPVLYGSV EWI RK RKF NF +L+E D P G YI+VGDTGE D AGE M YPE M+AVFLHVV+D +G +P + +NG P+++FRTYVGAA AV+LGLM GL++VI AA E L +VP S KW D+ D+ RA+
Sbjct: 85 DRGDFYPGVGEFMLALSQCGLTEEVNPANIAILTARAEEFKAALEIKEGSKLAVALRSAGEKVGINGWGVGPVLYGSVAEWIAQDRKGLRKFTNFERLIEQD-------PTGTIFQYIYVGDTGELDQEAGETMLREYPEVMKAVFLHVVTDD-VEGPPLIPPPKLINGHPVIFFRTYVGAAIDAVQLGLMSLDGLQSVIEAATEKLSDVPENSDKWKDIRKDMARAD 304
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A1E7FEW2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW2_9STRA) HSP 1 Score: 210 bits (534), Expect = 2.700e-59 Identity = 115/230 (50.00%), Postives = 148/230 (64.35%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQT--PLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRAE 686
RG FYPGV +F L+L+ Y++ + P ++A+LTARA EF ALEI D ++S R G++ G++ WG GPVLYGSV EWI RK RKF NF +L++ D P G YI+VGD GE D AGE M YPE ++AVFLHVV+D + +P + +NG PIV+FRTYVGAA AV+LGLM+ GL++VI AA E L +VP S KW D+ DL RAE
Sbjct: 93 GRGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQD-------PAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPI-IPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRAE 314
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A6V2PZW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PZW2_9STRA) HSP 1 Score: 209 bits (531), Expect = 9.540e-59 Identity = 115/241 (47.72%), Postives = 145/241 (60.17%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQT--------------PLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRA 683
RG FYPGVFQF LEL+ +++ P VAVLTARA EF ALE+ +++K FR G++ G++ WG GPVLYGSV EW+ RK RKF NF +L+E D P G Y++VGDTGE D AGE M YPE ++AVFLHVVSD +P + +NG PIV+FRTYVGAAAKAV+LGLM + GL VI+ A+ L VP + KW D+ D+ A
Sbjct: 92 ERGDFYPGVFQFMLELSMHKLGEGPNESEGDDTGEEDRLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIEDWGLGPVLYGSVAEWVIQDRKGLRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RIPPPKLINGRPIVFFRTYVGAAAKAVQLGLMYEEGLMRVIVEAEAALEGVPRSNEKWLDLERDISEA 322
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A7S4CYL7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CYL7_9EUGL) HSP 1 Score: 212 bits (539), Expect = 3.690e-58 Identity = 116/238 (48.74%), Postives = 153/238 (64.29%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRAESVESPLRSLG 716
RG+FYPGVF+F LELA Y + PLSVAVLTARAREFLFALE+ ++H I K FR G+ +G + WG G VLYGSV+EW+C RKS RK +NF+ L+ + P A ++FVGDTGE D AGE+M E +P M+A+FLHVV+ +P D+ +NG P+V+FRTYVGAA KAV+ GL+ GL V+ AA+ L + +S+ S DL R ++ PL + G
Sbjct: 246 RRGLFYPGVFRFMLELASYATT--EAPLSVAVLTARAREFLFALELDESHAICKAFRDTGRASGHEDWGIGEVLYGSVQEWVCQGRKSWRKVENFKLLLSS-------LPPDAARRFVFVGDTGELDQEAGEIMLEEFPSCMQALFLHVVAPDPALVPAPLPRDKLINGAPVVFFRTYVGAARKAVKYGLLGVDGLAAVVEAARADLERIEPESAGGSSRWADLNRDIALCQPLLAEG 474
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A7S2IAS8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAS8_9STRA) HSP 1 Score: 207 bits (527), Expect = 4.960e-58 Identity = 114/240 (47.50%), Postives = 144/240 (60.00%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPS-------------WQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRA 683
RG FYPGVFQF LEL+ + + + P VAVLTARA EF ALE+ +++K FR G++ G+ WG GPVLYGSV EW+ RK RKF NF +L+E D P G Y++VGDTGE D AGE M YPE ++AVFLHVVSD VP + +NG P+V+FRTYVGAAA+AV+LGLM + GL VI+ A+ L VP + KW D+ D+ A
Sbjct: 104 TRGEFYPGVFQFMLELSMPTLDNDDDENDTENEKSQFLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIDDWGLGPVLYGSVAEWVIQDRKGMRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RVPPPKLINGRPVVFFRTYVGAAARAVQLGLMQEEGLMRVIVEAEAALKGVPTSNEKWLDLERDISEA 333
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: W7UBU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBU9_9STRA) HSP 1 Score: 208 bits (530), Expect = 1.190e-57 Identity = 106/207 (51.21%), Postives = 139/207 (67.15%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETL 623
RG +YPG FQF+LEL+R+ VP + P VAVLTARAREF FALE+ +H++ + + G NG++ WG G VLYGSVKEW+C SRK RKF+NF L D R + + Y+FVGDTGE D +AGE M +YP R++A+F+H VS++R P DRT+ VP++YFRTYVGAA KA ELGL+ SG+E V+ E +
Sbjct: 137 KRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQD------RLDRTD--YVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSP--PPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEI 333
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Match: A0A1Z5KGY8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGY8_FISSO) HSP 1 Score: 200 bits (509), Expect = 3.220e-56 Identity = 107/227 (47.14%), Postives = 142/227 (62.56%), Query Frame = 3
Query: 3 NRGMFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISKRFRLCGQRNGLKAWGRGPVLYGSVKEWICPSRKSDRKFKNFRKLVEADGQGGRGRPNGAEGGYIFVGDTGEGDPRAGEMMTERYPERMRAVFLHVVSDTRKQGRVSVPEDRTVNGVPIVYFRTYVGAAAKAVELGLMDKSGLENVIIAAKETLVNVPAKSSKWSDMMTDLVRA 683
RG+ YPGV +F +L+ V TP VA+LTARA EF ALE+ + ++++F G+R G+ WG GPVLYGSV EW+ RK RKF NF +L++ D P G Y++VGDTGE D +A E M YPE ++AVFLHVVS + G V +P + +NG P+++FRTYVGAA AVELGLM + GL VI A+ +L + P S KW D+ D+ RA
Sbjct: 58 ERGVVYPGVAEFMFQLSSNNVA---TPAKVAILTARAEEFKAALELKASSSLARKFAQAGERAGVSGWGIGPVLYGSVAEWVIQDRKGLRKFTNFERLLQQD-------PTGEVLRYVYVGDTGELDQQAAETMLREYPEIVQAVFLHVVSG--ELGDVFIPPPKLINGRPVIFFRTYVGAALAAVELGLMPREGLVQVIDASVLSLADEPRSSDKWKDLEVDMERA 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78957.15558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78957.15558.1 >prot_H-elongata_contig78957.15558.1 ID=prot_H-elongata_contig78957.15558.1|Name=mRNA_H-elongata_contig78957.15558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp MFYPGVFQFSLELARYRVPSWQTPLSVAVLTARAREFLFALEICDTHEISback to top mRNA from alignment at H-elongata_contig78957:104..2231- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78957.15558.1 ID=mRNA_H-elongata_contig78957.15558.1|Name=mRNA_H-elongata_contig78957.15558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2128bp|location=Sequence derived from alignment at H-elongata_contig78957:104..2231- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78957:104..2231- >mRNA_H-elongata_contig78957.15558.1 ID=mRNA_H-elongata_contig78957.15558.1|Name=mRNA_H-elongata_contig78957.15558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig78957:104..2231- (Himanthalia elongata Himel1 dioecious)back to top |