mRNA_H-elongata_contig78917.15555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78917.15555.1
Unique NamemRNA_H-elongata_contig78917.15555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: D7G758_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G758_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.800e-113
Identity = 171/215 (79.53%), Postives = 195/215 (90.70%), Query Frame = 1 
Query:   16 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 660
            VNRQIKIEEIVNAEVSAL  ++LH+ ++FRY    LE  MEAAWRHTD+LIFQSRYQEILLLVQDDPLEDL+R+II+VDDE LA++AHR KSGV RD LGYLRGVS++L+KLRT RLSSEGRVLPP HFGIL+ILASMLLFGFTLASA+PP+ +G V  AFES+VLFTLLLFSFS+LLEFALDLTNPF+GRYKVRRTTTTA++VKIRSEIV+V G
Sbjct:   78 VNRQIKIEEIVNAEVSALLAILLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLLFSFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMG 292
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BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: A0A6H5JLZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ7_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 5.260e-111
Identity = 170/215 (79.07%), Postives = 195/215 (90.70%), Query Frame = 1 
Query:   16 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 660
            VNRQIKIEEIVNAEVSAL  +VLH+ ++FRY    LE  MEAAWRHTD+LIFQSRYQEILLLVQDDPLEDL+R+II+VDDE LA++AHR KSGV RD LGYLRGVS++L+KLRT RLSSEGRVLPP HFGIL+ILASMLLFGFTLASA+PP+ +G V  AFES+VLFTLL+F+FS+LLEFALDLTNPF+GRYKVRRTTTTA++VKIRSEIV+V G
Sbjct:  200 VNRQIKIEEIVNAEVSALLSIVLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLVFNFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMG 414
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BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: A0A835YX84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX84_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.650e-68
Identity = 123/220 (55.91%), Postives = 158/220 (71.82%), Query Frame = 1 
Query:   16 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGS-----VPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 660
            VNRQ +IEE+VN E++A++ L+ HL +FF  D +  E  ++A WRHTD LIF SRYQEIL LVQ D +E+L+RMII VD++  A   H  K  ++R+LLGYLR + AE+ +LR  R+S+EGRVLPP HF IL  LA +LLFGFTL S + P  + +     VP   ES++LF LL+ +FS LL FALDLTNPF GRYKVRRTT TA L+KIR++IV   G
Sbjct:  120 VNRQNRIEELVNQELAAMTTLLWHLIDFFDGDPEKREQALKAVWRHTDQLIFNSRYQEILALVQGDSIEELMRMIIRVDEKDTAQNTH--KPNINRELLGYLRPLGAEINRLRAMRISAEGRVLPPVHFFILGSLAMLLLFGFTLTSMQAPLVDDTAAVLQVPQ--ESRILFALLVNAFSALLGFALDLTNPFNGRYKVRRTTATAYLIKIRNDIVQTLG 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G758_ECTSI1.800e-11379.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ7_9PHAE5.260e-11179.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX84_9STRA2.650e-6855.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78917contigH-elongata_contig78917:420..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.2e-90
Seed eggNOG ortholog2880.D7G758
EggNOG free text desc.Protein of unknown function (DUF4239)
EggNOG OGs2E8UB@1,2SF9E@2759
Ec32 ortholog descriptionProtein of unknown function DUF4239
Ec32 orthologEc-01_010950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size660
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78917.15555.1prot_H-elongata_contig78917.15555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78917 420..2785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.7624366-CDS-H-elongata_contig78917:419..5181622931193.7624366-CDS-H-elongata_contig78917:419..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 420..518 -
1691679736.2848663-CDS-H-elongata_contig78917:419..5181691679736.2848663-CDS-H-elongata_contig78917:419..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 420..518 -
1622931193.7755826-CDS-H-elongata_contig78917:1145..12811622931193.7755826-CDS-H-elongata_contig78917:1145..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1146..1281 -
1691679736.2953374-CDS-H-elongata_contig78917:1145..12811691679736.2953374-CDS-H-elongata_contig78917:1145..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1146..1281 -
1622931193.7926612-CDS-H-elongata_contig78917:1504..16231622931193.7926612-CDS-H-elongata_contig78917:1504..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1505..1623 -
1691679736.3062148-CDS-H-elongata_contig78917:1504..16231691679736.3062148-CDS-H-elongata_contig78917:1504..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1505..1623 -
1622931193.8117685-CDS-H-elongata_contig78917:1829..19011622931193.8117685-CDS-H-elongata_contig78917:1829..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1830..1901 -
1691679736.3159602-CDS-H-elongata_contig78917:1829..19011691679736.3159602-CDS-H-elongata_contig78917:1829..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 1830..1901 -
1622931193.8286514-CDS-H-elongata_contig78917:2347..24771622931193.8286514-CDS-H-elongata_contig78917:2347..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 2348..2477 -
1691679736.3252108-CDS-H-elongata_contig78917:2347..24771691679736.3252108-CDS-H-elongata_contig78917:2347..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 2348..2477 -
1622931193.8521597-CDS-H-elongata_contig78917:2681..27851622931193.8521597-CDS-H-elongata_contig78917:2681..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 2682..2785 -
1691679736.334258-CDS-H-elongata_contig78917:2681..27851691679736.334258-CDS-H-elongata_contig78917:2681..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78917 2682..2785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78917.15555.1

>prot_H-elongata_contig78917.15555.1 ID=prot_H-elongata_contig78917.15555.1|Name=mRNA_H-elongata_contig78917.15555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp
MLVGKVNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWR
HTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVD
RDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTL
ASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVR
RTTTTAVLVKIRSEIVSVRG
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mRNA from alignment at H-elongata_contig78917:420..2785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78917.15555.1 ID=mRNA_H-elongata_contig78917.15555.1|Name=mRNA_H-elongata_contig78917.15555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2366bp|location=Sequence derived from alignment at H-elongata_contig78917:420..2785- (Himanthalia elongata Himel1 dioecious)
ATGCTTGTTGGAAAGGTTAACCGGCAGATCAAGATCGAGGAGATTGTCAA
TGCCGAAGTCTCGGCGCTGTCTGTCCTGGTCCTGCACCTGCGGGAGTTCT
TTCGGTGCGTGAGGGAGGCTCGCGTGTTTGTTTACCGTACCCTCCCACTG
CACCACGTTGTCCCGCACGAAACCCTATCGTGAACCGTGAGGCATTGTGT
CGCCGGTTTGGCGGTTTATCGGAACAGTTGGCCGAGGTGTTTTGTCTGTT
CTTGGCGTTTAAGCATCGGGGCGCTACCGCGGGCATGTCTTAACCCCCTG
CGACAAAGGTACGACCGGGACGATCTTGAGTTGTGCATGGAAGCAGCATG
GAGGCACACGGACTCGCTCATTTTTCAAAGCCGGTATCAGGAGATCCTAC
TCTTGGTTCAGGACGATCCGCTTGAGGATCTTTTGAGGGTGAGGGCTCGA
GAAAACCTTCAGCAAAGTAGGGTAACCTCGCGTGTTTCTGGGGCCGGTGA
CAAAAGCAAAAGCTGAGCTAAGCGCGTAGCAAAACCACGCGAATGCAAAA
AATCAGACCCCAACGTAAACATCGGTTGCACAAATCAAAGAACGGGTTGA
GATACACACGGGTGCGCGAGATTCAGGATGTTAGTGATGTGCTGCGTGAT
AAAAACACGAACCGCTAGTAGAGCTGTTTCTCGCCGAGCGTACTGCGAGG
CTTTCTGCGAGAGTTCCACCGCACGCGCGGCGTGTCAAAGTTGAGAAAAC
ACCGCTGGTATACGGATATGTTTTCGCTGTGTTTGACGGCGTGTGTCCTC
TTCGTCCTCTTTCTTGGGCTCGCTTATCCGTTGGGTTACCTCCCCGTTGG
ATTGTGCTAAATTCTCGCCGATTCGTTCAACCAGATGATCATTTCGGTGG
ACGACGAAACGCTGGCGACCGAGGCTCACCGTGGAAAATCCGGTGTCGAT
CGAGACGTGAGATAATTTTGGCCATTCGGATTTTCCTTACTCCCCCCCAC
CACCGTTCTGTCCCTCAAAAGAGAGGCATGTCCCTGCGTACCCCTCACCC
CTACAGTGGATCTATTTTGAGTAGCGCGTATGTTTTTGAAACACGCCCTT
TCAACTTCGACTCCCTCCCGCGTATACACCGCACCAAATCCGTCGTGACG
CATCTGTGCCAGCTTCTGGGCTACCTCAGGGGTGTCTCCGCGGAGCTGAT
CAAGCTGCGCACGAACAGGTTATCCTCCGAGGGAAGAGTCCTCCCTCCCG
CCCACTTCGGCATCCTTATAATCCTCGCAAGGTATATCAACATAACACAG
CTAACACAGCTGGTGGCTGGAAGAATTGTAGGGGACGAAAGCAAGCGAAC
ACACCGGCGTGCGTTTGGCCGCTATCGATACACACACACAAACACACAAA
AATGTTCTGGCGTGCATCGTCTCGTGAAGCTGTTCCGCCTGTGGCCTTCC
GTTTCCTTTCCCTCCGTGTCGTCTGCCCGCACGGCGCCCCGCATCGCGAA
AAAGCATGTTGCTGTTCGGTTTCACGCTGGCGTCTGCTCGGCCGCCATCA
CCGGAAGGCTCCGTGCCGACTGCCTTCGAAAGTCAAGTGCTCTTCACTCT
ACTGCTCTTCAGCTTTTCGGTGCTGCTGGAGTTCGCACTGGTGAGCCAGG
TTTTAACCCACCCCCCGCCCCCCGCCCACCTATCCCCTGTGTACATCACA
GGACGCCTGCCGGCTTTGTACCAAAACATGTGTGAACTTGCGTCGAGGCC
AGGGCATGCCTCTTCTCGCTATATAAATACATAGACGCGCGTGGCCAGGG
TCGAGGCTTGCGTGTTGCCGCAGTCAGTCTGCTTCACTTGATACATGGTG
GAGCTAGCGTCTTCGTCGTCGCCCTGAGGGAAATCGCAACCGACTTACCC
AACCGTCACTGCCGGCATATCACCACCCCGATGGTGGCGTGGCTCCTTGT
TTTCTGTCGACACGCGCGTTTCCGCTTCCGACGGCTGACGAGTAAACAAC
AGGTCGTAGAAATATCGGGACTGTCGCTTCCGCCGCCGCCTTTGGCAGAA
ATCGCATCAGGCGAGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ACCCCCCAAATACAAACTTTTTCTTTCCATAAAAATTAAGAAACAACNNN
NNNNNNNCCCACTGGCCAAAAACCCCACCAGCCGAGCCCCCCCCCCCCCC
CCCTACCGAAGCTACCAAATACATATTACATATTATCTTTCCAAATATTG
AACTTTGGCGAATACAGGACTTGACGAATCCGTTCATGGGGAGATACAAG
GTGCGACGGACCACAACAACTGCGGTTCTGGTCAAGATTAGGAGCGAGAT
AGTCTCGGTGAGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig78917:420..2785-

>mRNA_H-elongata_contig78917.15555.1 ID=mRNA_H-elongata_contig78917.15555.1|Name=mRNA_H-elongata_contig78917.15555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig78917:420..2785- (Himanthalia elongata Himel1 dioecious)
ATGCTTGTTGGAAAGGTTAACCGGCAGATCAAGATCGAGGAGATTGTCAA
TGCCGAAGTCTCGGCGCTGTCTGTCCTGGTCCTGCACCTGCGGGAGTTCT
TTCGATGCTTGTTGGAAAGGTTAACCGGCAGATCAAGATCGAGGAGATTG
TCAATGCCGAAGTCTCGGCGCTGTCTGTCCTGGTCCTGCACCTGCGGGAG
TTCTTTCGGTACGACCGGGACGATCTTGAGTTGTGCATGGAAGCAGCATG
GAGGCACACGGACTCGCTCATTTTTCAAAGCCGGTATCAGGAGATCCTAC
TCTTGGTTCAGGACGATCCGCTTGAGGATCTTTTGAGGGTACGACCGGGA
CGATCTTGAGTTGTGCATGGAAGCAGCATGGAGGCACACGGACTCGCTCA
TTTTTCAAAGCCGGTATCAGGAGATCCTACTCTTGGTTCAGGACGATCCG
CTTGAGGATCTTTTGAGGATGATCATTTCGGTGGACGACGAAACGCTGGC
GACCGAGGCTCACCGTGGAAAATCCGGTGTCGATCGAGACATGATCATTT
CGGTGGACGACGAAACGCTGGCGACCGAGGCTCACCGTGGAAAATCCGGT
GTCGATCGAGACCTTCTGGGCTACCTCAGGGGTGTCTCCGCGGAGCTGAT
CAAGCTGCGCACGAACAGGTTATCCTCCGAGGGAAGAGTCCTCCCTCCCG
CCCACTTCGGCATCCTTATAATCCTCGCAAGCTTCTGGGCTACCTCAGGG
GTGTCTCCGCGGAGCTGATCAAGCTGCGCACGAACAGGTTATCCTCCGAG
GGAAGAGTCCTCCCTCCCGCCCACTTCGGCATCCTTATAATCCTCGCAAG
CATGTTGCTGTTCGGTTTCACGCTGGCGTCTGCTCGGCCGCCATCACCGG
AAGGCTCCGTGCCGACTGCCTTCGAAAGTCAAGTGCTCTTCACTCTACTG
CTCTTCAGCTTTTCGGTGCTGCTGGAGTTCGCACTGCATGTTGCTGTTCG
GTTTCACGCTGGCGTCTGCTCGGCCGCCATCACCGGAAGGCTCCGTGCCG
ACTGCCTTCGAAAGTCAAGTGCTCTTCACTCTACTGCTCTTCAGCTTTTC
GGTGCTGCTGGAGTTCGCACTGGACTTGACGAATCCGTTCATGGGGAGAT
ACAAGGTGCGACGGACCACAACAACTGCGGTTCTGGTCAAGATTAGGAGC
GAGATAGTCTCGGTGAGAGGTGACTTGACGAATCCGTTCATGGGGAGATA
CAAGGTGCGACGGACCACAACAACTGCGGTTCTGGTCAAGATTAGGAGCG
AGATAGTCTCGGTGAGAGGT
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