mRNA_H-elongata_contig78836.15552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78836.15552.1
Unique NamemRNA_H-elongata_contig78836.15552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: D7FSZ0_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ0_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.150e-47
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 DPSIDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRR-----------SGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            D SIDT  SGTTLVSVC+RGT+L+LTN+GDSR TLGRRR            GSLVAQ LTEDHKPD PAEK+RI+ AGGRVFS+EY+DG+DGPPRVWL + DTPGLAMSR
Sbjct:   94 DSSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRGEGGSANDGGGSLVAQALTEDHKPDIPAEKERIVRAGGRVFSIEYSDGVDGPPRVWLADKDTPGLAMSR 203
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A835ZAZ3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.890e-41
Identity = 67/101 (66.34%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 DPSIDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRR--SGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            D S+DTDFSG+TLV+ CIRG+ + + N+GDSR  LG ++   G+LVA+PL+ DHKPD  AE++RIL AGGRVF+VEY DG+DGPPRVWLG+MD PGLAMSR
Sbjct:  184 DHSVDTDFSGSTLVAACIRGSSITVANVGDSRAVLGIQQVPGGALVAEPLSVDHKPDAEAERERILAAGGRVFAVEYEDGLDGPPRVWLGHMDVPGLAMSR 284
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: F0XW26_AURAN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW26_AURAN)

HSP 1 Score: 141 bits (355), Expect = 3.510e-40
Identity = 63/97 (64.95%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    7 SIDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            ++DT+FSG+T V   +RG  L+++N+GDSR+TLG    G++VA+P++ DHKPD PAEK RIL AGGRVF+VEY DG+DGPPRVWLG+MD PGLAMSR
Sbjct:   57 AVDTEFSGSTYVFAALRGGALLVSNVGDSRVTLGVEVDGAIVARPVSIDHKPDAPAEKARILGAGGRVFAVEYDDGVDGPPRVWLGHMDVPGLAMSR 153
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: K0SMM4_THAOC (PPM-type phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMM4_THAOC)

HSP 1 Score: 143 bits (360), Expect = 1.030e-39
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            IDT+FSGTTL    IRG +L   NIGDSR+ LG  + G L+A+  T DHKPDTP EK+RI+ AGGRVF+VEY DGIDGPPRVWLG+MD PGLAMSR
Sbjct:  140 IDTEFSGTTLSMAIIRGNKLTGVNIGDSRVILGLEKDGKLMAEEFTHDHKPDTPKEKERIIAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 235
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A7S2W7E2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W7E2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.390e-39
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            IDT+FSGTTL    IRG  +   NIGDSR+ +G+ + G +V++  T DHKPD+P EK+RIL AGGRVF+VEY DGIDGPPRVWLG+MD PGLAMSR
Sbjct:   82 IDTEFSGTTLSMAIIRGNMMTGVNIGDSRVIIGKEKDGKIVSEEFTHDHKPDSPKEKERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 177
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A6S8ZMK7_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZMK7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.100e-39
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            IDT+FSGTTL    IRG ++   NIGDSR+ +G+   G LVA+  T DHKPDTP E++RIL AGGRVF+VEY DGIDGPPRVWLG+MD PGLAMSR
Sbjct:  184 IDTEFSGTTLSMAIIRGNKITGVNIGDSRVIIGKDEGGKLVAEEFTHDHKPDTPKEQERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 279
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A7S2W6R9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6R9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.380e-39
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            IDT+FSGTTL    IRG  +   NIGDSR+ +G+ + G +V++  T DHKPD+P EK+RIL AGGRVF+VEY DGIDGPPRVWLG+MD PGLAMSR
Sbjct:  165 IDTEFSGTTLSMAIIRGNMMTGVNIGDSRVIIGKEKDGKIVSEEFTHDHKPDSPKEKERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 260
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A1Z5J9I2_FISSO (PPM-type phosphatase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9I2_FISSO)

HSP 1 Score: 140 bits (353), Expect = 1.510e-38
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            ID++FSGTTL    +RG  +   NIGDSR+ LG++  G+L  Q +T DHKPD+PAEK+RIL  GGRVF+VEY DGIDGPPRVWLGNMD PGLAMSR
Sbjct:  154 IDSEFSGTTLSMAIVRGNTVTGVNIGDSRVILGKQEGGNLTYQEITYDHKPDSPAEKERILACGGRVFAVEYDDGIDGPPRVWLGNMDIPGLAMSR 249
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A7S1D593_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D593_CYCTE)

HSP 1 Score: 138 bits (348), Expect = 2.430e-38
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:   10 IDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            IDT+FSGTTL    +RG QL   N+GDSR+ LG   +GSL +  +T DHKPD+P EK+RIL  GGRVF+VEY DGIDGPPRVWLG+MD PGLAMSR
Sbjct:   99 IDTEFSGTTLSMAIVRGNQLTGVNVGDSRVILGLEENGSLGSAEITFDHKPDSPKEKERILACGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 194
[Close]
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Match: A0A7S2UGJ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGJ7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.580e-38
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 DPSIDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTEDHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR 297
            D  IDT+FSGTTL    IRG  +   NIGDSR+ +G+   G +VA+ LT+DHKPDTP E +RIL AGGRVF+VEY DGIDGPPRVWLG+MD PGLAM+R
Sbjct:  195 DFRIDTEFSGTTLSMAIIRGNTITGVNIGDSRVIIGKEVDGKMVAEELTQDHKPDTPKEMERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMAR 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78836.15552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSZ0_ECTSI2.150e-4771.82PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZAZ3_9STRA9.890e-4166.34Phosphatase 2C-like domain-containing protein n=1 ... [more]
F0XW26_AURAN3.510e-4064.95PPM-type phosphatase domain-containing protein (Fr... [more]
K0SMM4_THAOC1.030e-3968.75PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2W7E2_9STRA1.390e-3965.63Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6S8ZMK7_9STRA7.100e-3967.71Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A7S2W6R9_9STRA9.380e-3965.63Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5J9I2_FISSO1.510e-3866.67PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S1D593_CYCTE2.430e-3866.67Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2UGJ7_9STRA2.580e-3865.66Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78836contigH-elongata_contig78836:1417..2287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.4e-38
Seed eggNOG ortholog2880.D7FSZ0
KEGG koko:K04403,ko:K14803
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78836.15552.1prot_H-elongata_contig78836.15552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78836 1417..2287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.3082907-CDS-H-elongata_contig78836:1416..15391622931193.3082907-CDS-H-elongata_contig78836:1416..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 1417..1539 -
1691679736.1470077-CDS-H-elongata_contig78836:1416..15391691679736.1470077-CDS-H-elongata_contig78836:1416..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 1417..1539 -
1622931193.327914-CDS-H-elongata_contig78836:2053..21111622931193.327914-CDS-H-elongata_contig78836:2053..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 2054..2111 -
1691679736.1598198-CDS-H-elongata_contig78836:2053..21111691679736.1598198-CDS-H-elongata_contig78836:2053..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 2054..2111 -
1622931193.3480222-CDS-H-elongata_contig78836:2168..22871622931193.3480222-CDS-H-elongata_contig78836:2168..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 2169..2287 -
1691679736.1686287-CDS-H-elongata_contig78836:2168..22871691679736.1686287-CDS-H-elongata_contig78836:2168..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78836 2169..2287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78836.15552.1

>prot_H-elongata_contig78836.15552.1 ID=prot_H-elongata_contig78836.15552.1|Name=mRNA_H-elongata_contig78836.15552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
DPSIDTDFSGTTLVSVCIRGTQLVLTNIGDSRITLGRRRSGSLVAQPLTE
DHKPDTPAEKQRILCAGGRVFSVEYADGIDGPPRVWLGNMDTPGLAMSR*
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mRNA from alignment at H-elongata_contig78836:1417..2287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78836.15552.1 ID=mRNA_H-elongata_contig78836.15552.1|Name=mRNA_H-elongata_contig78836.15552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=871bp|location=Sequence derived from alignment at H-elongata_contig78836:1417..2287- (Himanthalia elongata Himel1 dioecious)
GACCCCTCGATCGACACGGATTTCAGCGGGACGACGCTCGTCTCCGTCTG
CATCCGAGGGACGCAGCTCGTGCTCACCAACATCGGAGACTCCCGCATTA
CCCTGGGAAGGCGTCGCTCGTCGAGGCAGGGGGAAGGGAGGCCTGGAAGA
GGGGGGGGGGCGGCGTGTTGGGGGAGGGGATCGCTCGTGGCACAGCCCCT
GACCGAGGATCACAAGCCCGACACGCCCGCGGAGGTGAGGGATGGATGAA
TGAAAAAATCGAGGTTCGGCGATTCGCGCTTTCGGGAAGGAAGGACTTGA
AAAATACTGGTATTATACATAATTGTCTCAATTGTCTTTTTATATATTGA
ATGAAGCGTGTGTGTGTGTGTCAACACATCTGAATGCGCCCCCTGCATGC
AATACAATGGCGTACAGTGGCATGAAAGAGCTCGAGCTGAGCGAGCGATC
CCTCTCCTGTGGGGAGCAATTTCGATACCTTCGTAGTCAGCCCATTGGTA
CATTCCTACAGTACCTCCTATGGACACAAAATCTTCACACACACACACAC
AGACACACAAAAATAGTTTGCATTACTAGGGGTAGTTATTATAGTATTTT
TATTTAAAAGACTTTAGGCTCATTATTATAGTATGGTATTCAATCCCCGG
AAATCGGAAACATCCTCTTGTTCCTGAAACCTTTTACTACGACATCATCC
CCTTGTTTGTTTCTTTGGTGGGGGCGGGGGGGCGGCGGACGAGAGCAGAA
ACAGCGTATCCTGTGCGCCGGCGGAAGGGTGTTCTCGGTCGAGTACGCGG
ACGGCATCGACGGCCCGCCGAGGGTGTGGCTTGGTAACATGGACACACCG
GGACTCGCCATGTCCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig78836:1417..2287-

>mRNA_H-elongata_contig78836.15552.1 ID=mRNA_H-elongata_contig78836.15552.1|Name=mRNA_H-elongata_contig78836.15552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig78836:1417..2287- (Himanthalia elongata Himel1 dioecious)
GACCCCTCGATCGACACGGATTTCAGCGGGACGACGCTCGTCTCCGTCTG
CATCCGAGGGACGCAGCTCGTGCTCACCAACATCGGAGACTCCCGCATTA
CCCTGGGAAGGCGTCGCTCGACCCCTCGATCGACACGGATTTCAGCGGGA
CGACGCTCGTCTCCGTCTGCATCCGAGGGACGCAGCTCGTGCTCACCAAC
ATCGGAGACTCCCGCATTACCCTGGGAAGGCGTCGCTCGGGATCGCTCGT
GGCACAGCCCCTGACCGAGGATCACAAGCCCGACACGCCCGCGGAGGGGA
TCGCTCGTGGCACAGCCCCTGACCGAGGATCACAAGCCCGACACGCCCGC
GGAGAAACAGCGTATCCTGTGCGCCGGCGGAAGGGTGTTCTCGGTCGAGT
ACGCGGACGGCATCGACGGCCCGCCGAGGGTGTGGCTTGGTAACATGGAC
ACACCGGGACTCGCCATGTCCAGGTAAAAACAGCGTATCCTGTGCGCCGG
CGGAAGGGTGTTCTCGGTCGAGTACGCGGACGGCATCGACGGCCCGCCGA
GGGTGTGGCTTGGTAACATGGACACACCGGGACTCGCCATGTCCAGGTAA
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