mRNA_H-elongata_contig78775.15546.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A6H5KYR4_9PHAE (V-type proton ATPase subunit a n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR4_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.260e-40 Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEVRHESV 548
MA+WFRSEDMAYVSIIVNEDAAHTCI DLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKL+FFG+EVR +V
Sbjct: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEVRFSTV 77
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: D7FPY6_ECTSI (V-type proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.860e-36 Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 3
Query: 315 TMAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEVR 536
TMA+WFRSEDMAYVSIIVNEDAAHTCI DLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKL+FFG+EV+
Sbjct: 83 TMARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEVK 156
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A6U2Q738_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2Q738_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.760e-32 Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
MAKWFRSE+M YVS+IVNEDAAH C+ DLGKLG++QFTDLNP+LT FQRRYV+Y+KR DELERKL +FG+E
Sbjct: 1 MAKWFRSEEMEYVSLIVNEDAAHQCLSDLGKLGVLQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFGNE 71
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S4JK70_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JK70_9STRA) HSP 1 Score: 117 bits (292), Expect = 8.440e-31 Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFG 524
MA+WFRSE+M Y+S+IVNEDAAH C+ DLG+LG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL FF
Sbjct: 1 MARWFRSEEMEYISLIVNEDAAHDCLADLGRLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFA 69
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A835ZAQ4_9STRA (V-type proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.790e-30 Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
MA WFRSEDM YVS+I+NEDAAH+CI DLGKLG++QFTDLNPELT FQRRYV +IKRIDELERK+ FFG+E+
Sbjct: 1 MASWFRSEDMTYVSLIMNEDAAHSCISDLGKLGVVQFTDLNPELTPFQRRYVNFIKRIDELERKIKFFGEEI 72
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: K0RXJ3_THAOC (V-type proton ATPase subunit a n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXJ3_THAOC) HSP 1 Score: 117 bits (292), Expect = 9.810e-30 Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
MA+WFRSE M Y+S+IVNEDAAH C+ DLGKL IQFTDLNP+LT FQRRYV+Y++R DELERKL FFG E
Sbjct: 1 MARWFRSEHMEYISLIVNEDAAHDCLADLGKLSAIQFTDLNPDLTPFQRRYVSYVRRCDELERKLRFFGSE 71
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S1BU79_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BU79_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.510e-28 Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
MA+WFRSE M Y+S+IVNEDAAH C+ DLG+LGMIQFTDLNP+LT FQRRYV+Y+KR DELERKL FFG E
Sbjct: 1 MARWFRSEPMEYISLIVNEDAAHDCLSDLGQLGMIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFGSE 71
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A7S2IB47_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IB47_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.790e-28 Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDE 530
M++WFRSE M Y+S+IVN DAAH C+ DLGKLG+IQFTDLNPELT FQRRYV+Y+KR DELERKL +F E
Sbjct: 28 MSRWFRSEPMEYISLIVNGDAAHDCLSDLGKLGVIQFTDLNPELTPFQRRYVSYVKRCDELERKLRYFSTE 98
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: B7G3I2_PHATC (V-type proton ATPase subunit a n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3I2_PHATC) HSP 1 Score: 119 bits (298), Expect = 7.100e-28 Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
MA+WFRSE M Y+S+IVNEDAAH C+ DLGKLG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL +F +E+
Sbjct: 1 MARWFRSEPMEYISLIVNEDAAHDCLADLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFSNEI 72
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Match: A0A4D9CU34_9STRA (V-type proton ATPase subunit a n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU34_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.180e-27 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 3
Query: 318 MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLSFFGDEV 533
MAKWFRSE+M YVS+IVNEDAAH + DLG LG+IQFTDLN E TAFQRRY++YIKR DELERKL + E+
Sbjct: 1 MAKWFRSEEMEYVSLIVNEDAAHGAVNDLGMLGIIQFTDLNHEQTAFQRRYISYIKRCDELERKLRYMRTEI 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78775.15546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78775.15546.1 >prot_H-elongata_contig78775.15546.1 ID=prot_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp MAKWFRSEDMAYVSIIVNEDAAHTCIFDLGKLGMIQFTDLNPELTAFQRRback to top mRNA from alignment at H-elongata_contig78775:1541..2088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78775.15546.1 ID=mRNA_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig78775:1541..2088+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78775:1541..2088+ >mRNA_H-elongata_contig78775.15546.1 ID=mRNA_H-elongata_contig78775.15546.1|Name=mRNA_H-elongata_contig78775.15546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig78775:1541..2088+ (Himanthalia elongata Himel1 dioecious)back to top |