mRNA_H-elongata_contig7876.15544.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE) HSP 1 Score: 155 bits (392), Expect = 6.990e-41 Identity = 105/276 (38.04%), Postives = 134/276 (48.55%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+G+LLR + I +RWA +F TLLN KSPTL P+I E Q P D QR ++E+ L KA G D + EL I ++ V V G ++P++ +DA GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S WF V + V QGCV++P + NI
Sbjct: 252 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNI 525
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J7L3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7L3_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.230e-40 Identity = 104/276 (37.68%), Postives = 134/276 (48.55%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+G+LLR + I +RWA +F TLLN KSPTL P+I E Q P D QR ++E+ L KA G D ++ EL I ++ V V G ++P++ +DA GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S WF V + V QGCV++ + NI
Sbjct: 121 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGYDSIAAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVSIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSLLLFNI 394
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5K3W7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.370e-40 Identity = 104/276 (37.68%), Postives = 133/276 (48.19%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+G+LLR + I +RWA +F TLLN KSPTL P+I E Q P D QR ++E+ L KA G D + EL I ++ V V G ++P++ +DA GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S W V + V QGCV++P + NI
Sbjct: 190 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPHIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFNEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWLFVTQGVRQGCVLSPLLFNI 463
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5KHS8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS8_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.340e-40 Identity = 86/220 (39.09%), Postives = 117/220 (53.18%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLND-----------CSVSSLVLEGDEVPQQCR--------DAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQG 603
DG +LR I + WA WF LLN KSP + + + +WP PLD ++ E+ + +A KAVGP + EL + L+ S L + + C +GFRP RST DM+ ++RL +LARKK ++AC +DLTKA DSVDR LL VL FG+P K + IR F++ MRA VR+ DG S WF VG+ + QG
Sbjct: 122 DGKVLRNPTFIPQLWARWFHKLLNTKSPIIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREIANRKAVGPGDLPAELIKLFLDGDQDGGRTTAPHASKVLLKVVATRLNHHCERKGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQG 341
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.380e-40 Identity = 104/274 (37.96%), Postives = 131/274 (47.81%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNIS--------------------------LNDCSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAP 618
+G+LLR + I +RWA +F TLLN KSPTL P+I E Q P D QR ++E+ L KA G D + EL I D ++ L +G+ +VP +QC GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S WF V + V QGCV++P
Sbjct: 29 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNREDNPRDWKDTTIKVLYKKGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSP 297
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5KA63_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA63_9PHAE) HSP 1 Score: 155 bits (392), Expect = 5.130e-40 Identity = 93/237 (39.24%), Postives = 125/237 (52.74%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLND------------------CSVSSLVLEGDEVPQQCR-------DAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNIL 636
DG +LR I +RWA WF LLN KSPT+ + + +WP PLD + E+ G + +A KAVGPD + +L + C V V+ P R +GFRP RST DM+ ++RL +LARKK ++AC +DLTKA DSVDR LL VL FG+P K + IR F++ MRA VR+ DG CS F VG+ + Q C +AP + +L
Sbjct: 445 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDISSPLEVEGAVLEMADRKAVGPDDLPAKLIKLLFKKGDTMECGNYRGIFLVAHACKVLLKVVVTRLSPYCERKGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQCSELFDVGQGLRQVCNLAPVLFKLL 681
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5L9D6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.450e-39 Identity = 93/260 (35.77%), Postives = 128/260 (49.23%), Query Frame = 1
Query: 37 ERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLNDC--------SVSSLVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+RWA WFR LLN KSPT+ + + +WP PLD ++ E+ + +A KAVGPD + EL + L+ ++ V + +VPQQ +DA GFRP RST DM+ ++RL +LARKK ++AC +DLTKA DSVDR LL VL FG+P K + IR F++ MRA VR+ DG S WF VG+ + QGC +AP + N+
Sbjct: 63 QRWARWFRKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVALFGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNL 322
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J8S3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S3_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.030e-38 Identity = 104/279 (37.28%), Postives = 132/279 (47.31%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLND--------------------------CSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+G+LL + I +RWA +F T LN KSPTL P+I E Q P D QR ++E+ L KA G D + EL I ++ ++ L GD +VP +QC GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S WF V + V QGCV++P + NI
Sbjct: 29 NGVLLLNRDDILQRWARFFSTPLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKGWNGGDIPRVWKNATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNI 302
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.320e-38 Identity = 106/279 (37.99%), Postives = 134/279 (48.03%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVEL--------------------------FNISLNDCSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
DG+LLR + I +RWA +F TLLN KSPTL P+I E Q D QR ++E+ L KA G D + EL F + D +++ L +GD +VP +QC GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+P K I IRQF+D MRA VR DG S W V + V QGCV++P + NI
Sbjct: 499 DGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQ--RQATRDTQRLGDVPKLEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDFPLEWKDATITVLYNKGDRSNCNNYRRISLLSHVGKVPIKIITNRLSAFGEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWLFVTQRVRQGCVLSPLLFNI 772
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.500e-38 Identity = 102/273 (37.36%), Postives = 132/273 (48.35%), Query Frame = 1
Query: 1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSV-----SSLVLEGDEVPQQCRDA----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 633
+G+LLR + I +RWA +F TLLN KSPTL P+I E Q P D QR ++E+ L KA G D + EL I ++ V + V G ++ ++ +DA GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L VLA G+ K I IRQF+D MRA VR DG S WF V + QGCV++P + NI
Sbjct: 29 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKDLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTIKVWNGGDILREWKDATIKVLYKGDRSNCNNYGGISLLSHVGKVPIMIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGERQGCVLSPLLFNI 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7876.15544.1 >prot_H-elongata_contig7876.15544.1 ID=prot_H-elongata_contig7876.15544.1|Name=mRNA_H-elongata_contig7876.15544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQback to top mRNA from alignment at H-elongata_contig7876:1453..2192+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7876.15544.1 ID=mRNA_H-elongata_contig7876.15544.1|Name=mRNA_H-elongata_contig7876.15544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=740bp|location=Sequence derived from alignment at H-elongata_contig7876:1453..2192+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7876:1453..2192+ >mRNA_H-elongata_contig7876.15544.1 ID=mRNA_H-elongata_contig7876.15544.1|Name=mRNA_H-elongata_contig7876.15544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig7876:1453..2192+ (Himanthalia elongata Himel1 dioecious)back to top |