mRNA_H-elongata_contig78721.15539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78721.15539.1
Unique NamemRNA_H-elongata_contig78721.15539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78721.15539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78721contigH-elongata_contig78721:1753..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size654
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.082913-UTR-H-elongata_contig78721:1752..17911622931192.082913-UTR-H-elongata_contig78721:1752..1791Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78721 1753..1791 +
1691679735.6325662-UTR-H-elongata_contig78721:1752..17911691679735.6325662-UTR-H-elongata_contig78721:1752..1791Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78721 1753..1791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.0982978-CDS-H-elongata_contig78721:1791..24451622931192.0982978-CDS-H-elongata_contig78721:1791..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78721 1792..2445 +
1691679735.640842-CDS-H-elongata_contig78721:1791..24451691679735.640842-CDS-H-elongata_contig78721:1791..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78721 1792..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78721.15539.1prot_H-elongata_contig78721.15539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78721 1792..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78721.15539.1

>prot_H-elongata_contig78721.15539.1 ID=prot_H-elongata_contig78721.15539.1|Name=mRNA_H-elongata_contig78721.15539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MMSSVQPSFDVSLYGVAFASPGSLCARLVLPSVSYVRCRVKHDDADSETS
SRRGGWHIAFPVRSITTRPSLRWAIRHHWWSRHYPRHRPVVHVIRATDQD
NASDYGGLHYQRRDSGWRHWRSRTTLKFPWQPSPHQPMPKIVVQKREHEG
SEPIDLGVKSRSASANVSPSVQIDKIPVDLHRRQASPTITGNRALLNHRE
RAPSGIPCGEGETGKQEA
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mRNA from alignment at H-elongata_contig78721:1753..2445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78721.15539.1 ID=mRNA_H-elongata_contig78721.15539.1|Name=mRNA_H-elongata_contig78721.15539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig78721:1753..2445+ (Himanthalia elongata Himel1 dioecious)
CATCTGGCCTAAAGCCTATCGCAGGATGAGACTCGAAGAATGATGTCATC
AGTACAACCATCTTTTGACGTAAGCCTTTATGGCGTGGCGTTTGCAAGCC
CGGGTTCGTTGTGCGCAAGGTTAGTATTGCCATCAGTTTCCTACGTGCGA
TGCAGGGTCAAACATGATGATGCTGATTCTGAGACTTCAAGCAGGCGCGG
CGGGTGGCATATCGCTTTCCCTGTCAGATCTATCACAACGCGACCATCGT
TGCGCTGGGCTATTCGCCATCATTGGTGGTCGAGGCATTATCCTCGACAT
AGACCTGTCGTACACGTCATTCGCGCGACTGATCAGGATAACGCCAGTGA
TTATGGTGGATTGCATTATCAACGTCGAGATTCAGGTTGGCGACATTGGC
GTTCAAGAACTACCCTAAAATTTCCTTGGCAGCCATCTCCTCATCAACCT
ATGCCAAAGATCGTGGTCCAAAAACGAGAGCATGAGGGATCCGAGCCCAT
AGATCTCGGGGTAAAGTCCAGATCTGCCTCTGCCAATGTTTCACCATCAG
TTCAAATCGATAAGATCCCTGTTGATCTTCATCGGCGGCAAGCATCCCCA
ACTATAACCGGTAATAGAGCTCTCCTCAACCACCGCGAGCGGGCTCCGTC
TGGCATTCCTTGTGGCGAAGGGGAGACAGGAAAGCAGGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig78721:1753..2445+

>mRNA_H-elongata_contig78721.15539.1 ID=mRNA_H-elongata_contig78721.15539.1|Name=mRNA_H-elongata_contig78721.15539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig78721:1753..2445+ (Himanthalia elongata Himel1 dioecious)
ATGATGTCATCAGTACAACCATCTTTTGACGTAAGCCTTTATGGCGTGGC
GTTTGCAAGCCCGGGTTCGTTGTGCGCAAGGTTAGTATTGCCATCAGTTT
CCTACGTGCGATGCAGGGTCAAACATGATGATGCTGATTCTGAGACTTCA
AGCAGGCGCGGCGGGTGGCATATCGCTTTCCCTGTCAGATCTATCACAAC
GCGACCATCGTTGCGCTGGGCTATTCGCCATCATTGGTGGTCGAGGCATT
ATCCTCGACATAGACCTGTCGTACACGTCATTCGCGCGACTGATCAGGAT
AACGCCAGTGATTATGGTGGATTGCATTATCAACGTCGAGATTCAGGTTG
GCGACATTGGCGTTCAAGAACTACCCTAAAATTTCCTTGGCAGCCATCTC
CTCATCAACCTATGCCAAAGATCGTGGTCCAAAAACGAGAGCATGAGGGA
TCCGAGCCCATAGATCTCGGGGTAAAGTCCAGATCTGCCTCTGCCAATGT
TTCACCATCAGTTCAAATCGATAAGATCCCTGTTGATCTTCATCGGCGGC
AAGCATCCCCAACTATAACCGGTAATAGAGCTCTCCTCAACCACCGCGAG
CGGGCTCCGTCTGGCATTCCTTGTGGCGAAGGGGAGACAGGAAAGCAGGA
GGCGATGATGTCATCAGTACAACCATCTTTTGACGTAAGCCTTTATGGCG
TGGCGTTTGCAAGCCCGGGTTCGTTGTGCGCAAGGTTAGTATTGCCATCA
GTTTCCTACGTGCGATGCAGGGTCAAACATGATGATGCTGATTCTGAGAC
TTCAAGCAGGCGCGGCGGGTGGCATATCGCTTTCCCTGTCAGATCTATCA
CAACGCGACCATCGTTGCGCTGGGCTATTCGCCATCATTGGTGGTCGAGG
CATTATCCTCGACATAGACCTGTCGTACACGTCATTCGCGCGACTGATCA
GGATAACGCCAGTGATTATGGTGGATTGCATTATCAACGTCGAGATTCAG
GTTGGCGACATTGGCGTTCAAGAACTACCCTAAAATTTCCTTGGCAGCCA
TCTCCTCATCAACCTATGCCAAAGATCGTGGTCCAAAAACGAGAGCATGA
GGGATCCGAGCCCATAGATCTCGGGGTAAAGTCCAGATCTGCCTCTGCCA
ATGTTTCACCATCAGTTCAAATCGATAAGATCCCTGTTGATCTTCATCGG
CGGCAAGCATCCCCAACTATAACCGGTAATAGAGCTCTCCTCAACCACCG
CGAGCGGGCTCCGTCTGGCATTCCTTGTGGCGAAGGGGAGACAGGAAAGC
AGGAGGCG
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