mRNA_H-elongata_contig786.15532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig786.15532.1
Unique NamemRNA_H-elongata_contig786.15532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: D7G583_ECTSI (Acetylornithine transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G583_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.130e-40
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    4 INRRGRIRSLFGRPRRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            INRRG+IRSLFGRPRR VAAI+ME LQGEGGVVPA+ EFFS VRELCDETGALM+VDEVQTG+GRTGK+WGY+N  VEPDV+T A
Sbjct:  239 INRRGKIRSLFGRPRRAVAAIMMEALQGEGGVVPATPEFFSTVRELCDETGALMIVDEVQTGMGRTGKVWGYQNFDVEPDVVTCA 323
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A835ZAE5_9STRA (Acetylornithine transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.760e-35
Identity = 61/85 (71.76%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    4 INRRGRIRSLFGRPRRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            IN R ++R+L G P+RGVA ILME LQGEGG+VPA++EFF+AVRE+C+ETGALMM DEVQTG+GRTG IWG+ENLGVEPD  ++A
Sbjct:  237 INGRAKLRALLGLPKRGVAGILMEALQGEGGIVPATREFFAAVREICNETGALMMCDEVQTGMGRTGTIWGFENLGVEPDTFSSA 321
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A6V1MZH1_HETAK (Acetylornithine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MZH1_HETAK)

HSP 1 Score: 126 bits (316), Expect = 1.490e-32
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    4 INRRGRIRSLFGRPRRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            +NR+G   + FGRPR GVAA+L+EPLQGEGG+ P  +E+F  VR LCDE GAL+M+DEVQ G+GRTGK+WG+ENLGVEPDV T A
Sbjct:  218 LNRQGAQAAQFGRPRAGVAAVLLEPLQGEGGINPGRREYFQGVRALCDEVGALLMLDEVQVGVGRTGKMWGHENLGVEPDVFTLA 302
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: K8YRG0_NANGC (Acetylornithine transaminase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRG0_NANGC)

HSP 1 Score: 123 bits (308), Expect = 2.590e-31
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    4 INRRGRIRS-LFGRPRRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            IN  GR+R  L G+ RRGVAAILME LQGEGG+ P S+ FF+  R LCDETGAL+MVDEVQTG+GRTG++WGYE LGVEPDV T+A
Sbjct:  238 INFWGRLRGWLPGKKRRGVAAILMEALQGEGGIRPGSRSFFAKARALCDETGALLMVDEVQTGVGRTGRLWGYEQLGVEPDVFTSA 323
[Close]
BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A2T1EC45_9CHRO (Acetylornithine aminotransferase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EC45_9CHRO)

HSP 1 Score: 114 bits (286), Expect = 2.130e-28
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   49 RGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            RGVAAIL+EPLQGEGGV P ++ +F  +R++CDETG L+M+DEVQ G+GRTGK+WGYENLG+EPDV T+A
Sbjct:  206 RGVAAILIEPLQGEGGVRPGNRAYFQRLRDICDETGILLMLDEVQVGVGRTGKLWGYENLGIEPDVFTSA 275
[Close]
BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A0D8ZWP0_9CYAN (Acetylornithine aminotransferase n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZWP0_9CYAN)

HSP 1 Score: 113 bits (283), Expect = 5.730e-28
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   49 RGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            RGVAAIL+EPLQGEGGV P    +F  +R++CDETG L+M+DEVQ G+GRTGK+WGYENLG+EPD+ T+A
Sbjct:  206 RGVAAILLEPLQGEGGVRPGDLAYFQRIRDICDETGILLMLDEVQVGVGRTGKLWGYENLGIEPDIFTSA 275
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: K0RPW4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RPW4_THAOC)

HSP 1 Score: 110 bits (275), Expect = 1.550e-27
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   46 RRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            +RG+AAI++EPLQGEGG+VP +KE+F   R+LCDE GAL++ DEVQ G+GR+G +WG+ENLGVEPDV T+A
Sbjct:   87 KRGLAAIMLEPLQGEGGIVPGNKEYFECARKLCDEHGALLICDEVQAGMGRSGTLWGHENLGVEPDVFTSA 157
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BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: B7GEJ6_PHATC (Acetylornithine transaminase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEJ6_PHATC)

HSP 1 Score: 112 bits (279), Expect = 3.440e-27
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   49 RGVAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            +G+AAI+ME LQGEGG++   +EFF  +RE+CDETGALMM DEVQ G+GR+G++WGYENLGVEPD+ T+A
Sbjct:  249 QGLAAIMMEALQGEGGIIAGDEEFFRTIREICDETGALMMCDEVQVGMGRSGRLWGYENLGVEPDIFTSA 318
[Close]
BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A1X6PBT5_PORUM (Acetylornithine transaminase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBT5_PORUM)

HSP 1 Score: 112 bits (279), Expect = 3.760e-27
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   55 VAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            VAAIL+EPLQGEGGV P +K FF A RELCD  GAL+MVDEVQTG+GRTG +WG+E+LGV+PDV+TTA
Sbjct:  262 VAAILLEPLQGEGGVNPGTKAFFGAARELCDSAGALLMVDEVQTGMGRTGLLWGHEHLGVKPDVVTTA 329
[Close]
BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Match: A0A6G3YW53_9CYAN (Acetylornithine aminotransferase n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3YW53_9CYAN)

HSP 1 Score: 110 bits (276), Expect = 4.100e-27
Identity = 47/68 (69.12%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   55 VAAILMEPLQGEGGVVPASKEFFSAVRELCDETGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA 258
            VAAIL+EPLQGEGGV P  +++F  VR+LCDETG L+++DEVQ G+GRTGK+WGYENLG+EPD+ T A
Sbjct:  176 VAAILLEPLQGEGGVNPGDRDYFQQVRQLCDETGILLILDEVQVGVGRTGKLWGYENLGIEPDIFTLA 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig786.15532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G583_ECTSI2.130e-4082.35Acetylornithine transaminase n=2 Tax=Ectocarpus Ta... [more]
A0A835ZAE5_9STRA9.760e-3571.76Acetylornithine transaminase n=1 Tax=Tribonema min... [more]
A0A6V1MZH1_HETAK1.490e-3267.06Acetylornithine transaminase n=1 Tax=Heterosigma a... [more]
K8YRG0_NANGC2.590e-3170.93Acetylornithine transaminase n=3 Tax=Monodopsidace... [more]
A0A2T1EC45_9CHRO2.130e-2870.00Acetylornithine aminotransferase n=3 Tax=Cyanobact... [more]
A0A0D8ZWP0_9CYAN5.730e-2868.57Acetylornithine aminotransferase n=1 Tax=Aliterell... [more]
K0RPW4_THAOC1.550e-2766.20Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7GEJ6_PHATC3.440e-2767.14Acetylornithine transaminase n=2 Tax=Phaeodactylum... [more]
A0A1X6PBT5_PORUM3.760e-2775.00Acetylornithine transaminase n=1 Tax=Porphyra umbi... [more]
A0A6G3YW53_9CYAN4.100e-2769.12Acetylornithine aminotransferase n=1 Tax=Leptolyng... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig786contigH-elongata_contig786:9214..10620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue9.7e-34
Seed eggNOG ortholog2880.D7G583
KEGG rclassRC00006,RC00062
KEGG koko:K00818
KEGG ReactionR02283
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
EggNOG free text desc.N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EggNOG OGsCOG4992@1,KOG1401@2759
EC2.6.1.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig786.15532.1prot_H-elongata_contig786.15532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig786 9214..10620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.2675667-CDS-H-elongata_contig786:9213..92971622931191.2675667-CDS-H-elongata_contig786:9213..9297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 9214..9297 +
1691679735.270108-CDS-H-elongata_contig786:9213..92971691679735.270108-CDS-H-elongata_contig786:9213..9297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 9214..9297 +
1622931191.2881935-CDS-H-elongata_contig786:9937..100361622931191.2881935-CDS-H-elongata_contig786:9937..10036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 9938..10036 +
1691679735.2800276-CDS-H-elongata_contig786:9937..100361691679735.2800276-CDS-H-elongata_contig786:9937..10036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 9938..10036 +
1622931191.3029768-CDS-H-elongata_contig786:10545..106201622931191.3029768-CDS-H-elongata_contig786:10545..10620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 10546..10620 +
1691679735.2902887-CDS-H-elongata_contig786:10545..106201691679735.2902887-CDS-H-elongata_contig786:10545..10620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig786 10546..10620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig786.15532.1

>prot_H-elongata_contig786.15532.1 ID=prot_H-elongata_contig786.15532.1|Name=mRNA_H-elongata_contig786.15532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MINRRGRIRSLFGRPRRGVAAILMEPLQGEGGVVPASKEFFSAVRELCDE
TGALMMVDEVQTGIGRTGKIWGYENLGVEPDVITTA
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mRNA from alignment at H-elongata_contig786:9214..10620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig786.15532.1 ID=mRNA_H-elongata_contig786.15532.1|Name=mRNA_H-elongata_contig786.15532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1407bp|location=Sequence derived from alignment at H-elongata_contig786:9214..10620+ (Himanthalia elongata Himel1 dioecious)
ATGATAAACCGGCGGGGGAGAATCAGGAGTCTCTTCGGGCGGCCTCGTCG
TGGCGTCGCGGCTATCCTGATGGAGCCACTGCAGGTCAGCCAGCGCAAAG
CTGTAACAACGCAAAACGCCTCGATATTGAGTTCATCCAAATGAATGGGT
GTATGAGTTTAGGTCAAAGTTTGCGCGTTTTTTTTACGACCTCAAATTAA
GCCGACTGAGCCGATTCCCAACCCCGCTTGGCTCGCCAAACAAAAAGAAA
TAAAATAAAAATTAATCACTTTTCTCTCCGCGAGCTCAATACAGACAAAA
AGAGACAAAGCAATGCGCACGGCAAGTGCGGTCAGTAAGCTTTAACTGAG
AAAGGCGTCTGAAAATTGCGCACCTTTGCGAATGGAGTGAAGCGCAGCGT
CGAAAACTGCTGCTGGAATCTAGGTTTTACATGCTAACACGGGCGAAGTA
TGATATCCAGGGCGCTCGAATCACGTCCGTTGTTGGATACACGAGATGCC
TGCGTCACCGTGGATTTCCTTAGGGTAAACTATGAAATTCACTTGACGCA
AGACACGGGTGGACTAGAAATGTACTACTATATGGCTCAGCTCAAAGGCA
CGTTTAGGGGCGAGTATTTATATGCTACAAGTAAAACATGTTTTTGAGCT
AAAAGGGAGGGTACACCTATACTTGGTAAATATGTAGTATATACTGCTTC
TTGTACACGCTCATGTGGGAGCAGGGAGAGGGGGGAGTTGTCCCGGCCTC
TAAGGAGTTCTTCTCGGCTGTGCGCGAGCTCTGTGACGAGACTGGCGCGC
TCATGATGGTCGACGAGGTTCAGGTCAGCCCTTTCTGTCGAAGACAGCTG
CTAAACGGGACCGCGCAATGCTCGGCACCCCGACCTTTACTATCCGCGTG
GTCTCGGGATCGGGAGGCTGGCCACAACTTCGCACTGTTTTTTGCTGTGC
TTTTGTTTTTCGTACCCCCTGCCTCGTCCTCCAGTCATCTGGATCACTGG
TGAATGCTAGAATATATTTTCCAATCAAGTATTTATTTCATTTTCTCTTG
CCGATGCTGATAATCTTGTTGGCTCTGGGCACCGTGGTCGATTATTCTTC
CTGGTTGCACGTTAACCTTTCTCCGAAAAGTACTAGTAGGGATATGTCCT
TCGTGTCAGTGCATCGCTGCGCCAGTTGAACCTCTGCAGAAGGTCAGGTA
CATTTCCACACCAATCACATCTCTGCGCGGTTCCAATATCTGCACGAGTT
ACATATCGAGACCTGCCTTCGCAGGTCATTCATGTTTTAACGAATTTGTC
CCGTCTCGTCCCGTGTCACGGCCCTACCGCAGACAGGCATAGGGCGCACC
GGAAAGATTTGGGGCTATGAAAACTTGGGCGTAGAACCCGACGTCATCAC
TACCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig786:9214..10620+

>mRNA_H-elongata_contig786.15532.1 ID=mRNA_H-elongata_contig786.15532.1|Name=mRNA_H-elongata_contig786.15532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig786:9214..10620+ (Himanthalia elongata Himel1 dioecious)
ATGATAAACCGGCGGGGGAGAATCAGGAGTCTCTTCGGGCGGCCTCGTCG
TGGCGTCGCGGCTATCCTGATGGAGCCACTGCAGATGATAAACCGGCGGG
GGAGAATCAGGAGTCTCTTCGGGCGGCCTCGTCGTGGCGTCGCGGCTATC
CTGATGGAGCCACTGCAGGGAGAGGGGGGAGTTGTCCCGGCCTCTAAGGA
GTTCTTCTCGGCTGTGCGCGAGCTCTGTGACGAGACTGGCGCGCTCATGA
TGGTCGACGAGGTTCAGGGAGAGGGGGGAGTTGTCCCGGCCTCTAAGGAG
TTCTTCTCGGCTGTGCGCGAGCTCTGTGACGAGACTGGCGCGCTCATGAT
GGTCGACGAGGTTCAGACAGGCATAGGGCGCACCGGAAAGATTTGGGGCT
ATGAAAACTTGGGCGTAGAACCCGACGTCATCACTACCGCGACAGGCATA
GGGCGCACCGGAAAGATTTGGGGCTATGAAAACTTGGGCGTAGAACCCGA
CGTCATCACTACCGCG
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