mRNA_H-elongata_contig78597.15531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78597.15531.1
Unique NamemRNA_H-elongata_contig78597.15531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 1.440e-103
Identity = 178/316 (56.33%), Postives = 223/316 (70.57%), Query Frame = 1 
Query:    1 RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAEAEELMSRLDRRHDGRVFWEDFLEFFDDA-----DGRSSNGSTEPWFQLESKIAQKLVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRGGLSAKEVHRLFAALHDKT-----GVKYATLVEFLQSNNAKWYQTEKDIADKIIRAMGSDEPSRRAWLDRIRHRFMRLDAFRVGVMGASDFLQTLRENGCHLTFDDEARLLDALETEDSARYYSEGDVSYRELLLFCARRTGRWNETQPRLAQRLQEALRRQ 918
            RFRD+DID +GCLGRREF++ L L+L  E       S  F +GG++S+ EA ELM RLDR  DGRV WE F+++F DA      G    G  E WFQLE  IA+KL++ M+ QGG  ARR+W+NSL R F+  D++ TG L+++ F RC ++M   LSA+E  RLF +L   T     G +Y  LV FL+  NA WY  E DIADKI+ AMG D PSRRAWL+RIR RFM LDAFR GV+GASD LQ L++ GC+L  ++EARLLDALETE+SAR+ +EG VSYRELLLFCAR  G+W+E QP LA+RL+EALR Q
Sbjct: 1006 RFRDFDIDGDGCLGRREFMRALNLALACETGDDSDPSPYFTVGGVLSEQEAAELMDRLDRDRDGRVSWEGFVKYFADAVHGEEGGGRGGGHPESWFQLEVDIAEKLLQQMEAQGGSTARRAWVNSLRRRFQTADIHETGTLNRDEFFRCLRSMHVSLSAREGERLFLSLLPTTTDPMRGARYPELVNFLRGKNAMWYDVESDIADKILTAMGPDGPSRRAWLNRIRRRFMSLDAFRAGVLGASDLLQALKDGGCYLGLEEEARLLDALETEESARFDTEGGVSYRELLLFCARHAGKWSEGQPLLAERLREALRSQ 1321
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BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Match: A0A6H5JNM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM1_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 8.760e-54
Identity = 101/207 (48.79%), Postives = 133/207 (64.25%), Query Frame = 1 
Query:    1 RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAEAEELMSRLDRRHDGRVFWEDFLEFFDDA-----DGRSSNGSTEPWFQLESKIAQKLVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRGGLSAKEVHRLFAALHDKT-----GVKYATLVEFLQSNNAKWYQTEKDIADKI 591
            RF+D+DID +GCLGRREF++ L L+L  E       S  F +GG++S+ EA ELM RLDR  DGRV WE F+E+F DA      G    G  E WFQLE  IA+KL++ ++ QGG  ARR+W+NSL R F+  D++ TG L+++ F RC ++M   LSA+E  RLF +L   T     G +Y  LV FL+  NAKWY  E DIADK+
Sbjct:  995 RFQDFDIDGDGCLGRREFVRALNLALACETGDDSDPSPYFTVGGVLSEQEASELMGRLDRDRDGRVSWEGFVEYFADAVHGEEGGGRGGGHPESWFQLEVDIAEKLLQQLEAQGGCTARRAWVNSLRRRFQTADIHETGTLNRDAFFRCLRSMHVSLSAREGERLFLSLLPTTTDPTRGARYPELVNFLRGKNAKWYDVESDIADKV 1201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7I0_ECTSI1.440e-10356.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM1_9PHAE8.760e-5448.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78597contigH-elongata_contig78597:208..2588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.5
Seed ortholog evalue2.5e-92
Seed eggNOG ortholog2880.D7G7I0
KEGG koko:K02183,ko:K14684,ko:K15100,ko:K16466
KEGG TC1.I.1,2.A.29.23,2.A.29.7
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-02_000360.1
Exons7
Model size918
Cds size918
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.1155581-CDS-H-elongata_contig78597:207..3311622931191.1155581-CDS-H-elongata_contig78597:207..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 208..331 -
1691679735.1873646-CDS-H-elongata_contig78597:207..3311691679735.1873646-CDS-H-elongata_contig78597:207..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 208..331 -
1622931191.1300201-CDS-H-elongata_contig78597:567..7731622931191.1300201-CDS-H-elongata_contig78597:567..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 568..773 -
1691679735.2012432-CDS-H-elongata_contig78597:567..7731691679735.2012432-CDS-H-elongata_contig78597:567..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 568..773 -
1622931191.143976-CDS-H-elongata_contig78597:1140..12321622931191.143976-CDS-H-elongata_contig78597:1140..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1141..1232 -
1691679735.2146306-CDS-H-elongata_contig78597:1140..12321691679735.2146306-CDS-H-elongata_contig78597:1140..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1141..1232 -
1622931191.158056-CDS-H-elongata_contig78597:1462..15451622931191.158056-CDS-H-elongata_contig78597:1462..1545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1463..1545 -
1691679735.2259486-CDS-H-elongata_contig78597:1462..15451691679735.2259486-CDS-H-elongata_contig78597:1462..1545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1463..1545 -
1622931191.1831436-CDS-H-elongata_contig78597:1721..18341622931191.1831436-CDS-H-elongata_contig78597:1721..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1722..1834 -
1691679735.2383828-CDS-H-elongata_contig78597:1721..18341691679735.2383828-CDS-H-elongata_contig78597:1721..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 1722..1834 -
1622931191.2006288-CDS-H-elongata_contig78597:2035..21281622931191.2006288-CDS-H-elongata_contig78597:2035..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 2036..2128 -
1691679735.2470505-CDS-H-elongata_contig78597:2035..21281691679735.2470505-CDS-H-elongata_contig78597:2035..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 2036..2128 -
1622931191.2189462-CDS-H-elongata_contig78597:2381..25881622931191.2189462-CDS-H-elongata_contig78597:2381..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 2382..2588 -
1691679735.2551312-CDS-H-elongata_contig78597:2381..25881691679735.2551312-CDS-H-elongata_contig78597:2381..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78597 2382..2588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78597.15531.1prot_H-elongata_contig78597.15531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78597 208..2588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78597.15531.1

>prot_H-elongata_contig78597.15531.1 ID=prot_H-elongata_contig78597.15531.1|Name=mRNA_H-elongata_contig78597.15531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAE
AEELMSRLDRRHDGRVFWEDFLEFFDDADGRSSNGSTEPWFQLESKIAQK
LVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRG
GLSAKEVHRLFAALHDKTGVKYATLVEFLQSNNAKWYQTEKDIADKIIRA
MGSDEPSRRAWLDRIRHRFMRLDAFRVGVMGASDFLQTLRENGCHLTFDD
EARLLDALETEDSARYYSEGDVSYRELLLFCARRTGRWNETQPRLAQRLQ
EALRRQ
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mRNA from alignment at H-elongata_contig78597:208..2588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78597.15531.1 ID=mRNA_H-elongata_contig78597.15531.1|Name=mRNA_H-elongata_contig78597.15531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-elongata_contig78597:208..2588- (Himanthalia elongata Himel1 dioecious)
AGATTCCGAGACTATGACATTGATAACGAAGGATGCCTGGGAAGGCGGGA
GTTTATCAAGGTGCTTGCCCTATCGCTGACCGGCGAGGCCTGGAGCGTGG
GTCAATTATCCTCTGGTTTTCCTTTAGGGGGGCTCATTTCAGACGCCGAG
GCTGAAGAGCTCATGAGCAGACTTGATCGTCGTCACGATGGTAGAGTTTT
CTGGGAGGTACGTTGGTGTTTACAGGTCGTAAGTTTTCCAGGAAAGGTAC
GACACAGGTTTACGACACGTTCTGGTTATAAATATTACTTGCCAGCAATC
AATACGATTTGCTCGCCATTTCCAGATCGAGTATGATTTCTTGTCGTTCA
TGTACACTCTTTCCTGGGACCCCGAAGGAGCGCTGCAGTTGATTGCGCTC
CGGAGTTCATATACATTTTTAGAAAAAGTATTGCCCTTTATCGATATCGA
TGTGTGAAAGGATTTCTTGGAGTTCTTCGATGATGCCGACGGAAGGAGCT
CCAACGGGTCCACGGAGCCATGGTTCCAGCTGGAGAGCAAGATCGCACAG
AAGGTGCTCATTGAACCATTTTATTAGGACAAGTGGCAAGAGCACCTACC
ATAACCTATGGCACTCATCTGAGTTGTTTGAGAAAATTCCTTGTCGAGCA
ACTATCAACTCGCTCAACAGCCGGCTCGATCACGCTGTTTACCAGAAAAT
ATCAGACACAAATATCAAACCCCGCCATCCCAACCATGAACTAATCCATA
CCAGCTGGTGGAATACATGAAAGGGCAAGGAGGGGTGGCGGCCAGACGAT
CGTGGCTAAACAGCTTACATCGGTGTTTTCGGGATACCGACGTCAATCGA
ACTGGTGTGCTAGATAAGTGAGACTGAGTAACGCTGAAGTCGGTCTCCAA
CCATGCATTTTCTCTCTACTCGGTTCGTCTTCGACTGGTGATCACGTCCT
GCAAAAAAACTGCAGCAACATTCATTAAAAACTTCGAATGCATACCAAAC
TCTGTCCCTTTTTCAACTACTACCAACAATGCTGAATTAAAAGAGAGGGA
TTTTCGAGGTGCTTCCAGGCCATGCGCGGAGGACTGTCTGCCAAGGAAGT
GCACAGACTATTCGCGGCACTGCACGGTGAAGGAGGCGAGAATCCGGGGT
GTGCTATATCTTGACGCCACACGAATCTTCTCACCCGTCCTAAGACTTCA
TGATACATACCTGATATATAGGTGTTTGTTACGGAAATAATTCGGATACG
ATATTGTTCCGGTATATAGAGAGAAGGATATTTTCTTCGTCAGTCTTCCG
CAGTGGTCTTAAGGGAAGAGCGCTAACTTCGACATTCGCTCCGGTTGCGT
CTTGAGACAAAACAGGTGTTAAATATGCCACACTGGTCGAATTTCTTCAG
AGCAACAACGCAAAGTGGTATCAGACTGAGAAGGACATTGCAGACAAGGT
TAGGGGACTCAGCTATATATATATATTTCGAATATGTCAGTACTCTGTGG
CCACTTCACGCAACGATCCTCGTTGATCTCAACAAAACGGGGAACAAAGT
AAAATAAATAGTAAGTTAATGGAGTAAAGTGTTTTGTTGTCTGCAGCGCA
TGATGCGTTCGTACACCATATTAGGCTGTTTCCGTGGGAAAGACCTATGG
AGGAAGGCGTTACAAGAAACACTGGGATCATCGGGACAAGAGTGCAAATA
TAGTACAAGGTGTAAGGTCAGCTCGAGAAACCCATAAGATGTGAGATAGT
CTTTCGCTTGCTCCTCTCTCCCTTCGTATACATTCGGCTTGCGTCGGTCC
TTGGTTTGCCTGTAGATCATCCGAGCCATGGGTTCAGATGAACCCTCTAG
GCGAGCTTGGTTGGACCGTATAAGGCACCGCTTCATGAGATTGGATGCCT
TCCGCGTGGGAGTTATGGGAGCATCGGATTTTCTCCAGACGCTAAGGGAA
AACGGGTGTCATCTAACCTTTGACGATGAAGCGAGGCTCTTAGATGCTCT
GGAAACAGAAGATTCGGCGAGGTAAATCCCCCAACCTCATCAAGCAAGCA
TACTACAGTATCCTCTGCCAGTCTGGTCTTACAATACCTGGAGGCTATTT
TGACAATGGGCAGACCCTATGTACACACGTCAAACAGCGGACAGAACTAA
GTAGGGCTTCAGGCTCTCTTAAGAAAACAAATGATACAACCGTCGTAATT
GACTACCTAGTAGGATCGACAGTCAAGCGAACACCACTTGTACGGCTACA
TTTTCAGGTATTACAGCGAAGGAGATGTTTCTTACAGGGAACTACTTTTG
TTTTGCGCTAGGCGCACTGGAAGATGGAACGAAACCCAACCAAGACTTGC
CCAAAGACTCCAGGAAGCACTTAGACGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig78597:208..2588-

>mRNA_H-elongata_contig78597.15531.1 ID=mRNA_H-elongata_contig78597.15531.1|Name=mRNA_H-elongata_contig78597.15531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig78597:208..2588- (Himanthalia elongata Himel1 dioecious)
AGATTCCGAGACTATGACATTGATAACGAAGGATGCCTGGGAAGGCGGGA
GTTTATCAAGGTGCTTGCCCTATCGCTGACCGGCGAGGCCTGGAGCGTGG
GTCAATTATCCTCTGGTTTTCCTTTAGGGGGGCTCATTTCAGACGCCGAG
GCTGAAGAGCTCATGAGCAGACTTGATCGTCGTCACGATGGTAGAGTTTT
CTGGGAGAGATTCCGAGACTATGACATTGATAACGAAGGATGCCTGGGAA
GGCGGGAGTTTATCAAGGTGCTTGCCCTATCGCTGACCGGCGAGGCCTGG
AGCGTGGGTCAATTATCCTCTGGTTTTCCTTTAGGGGGGCTCATTTCAGA
CGCCGAGGCTGAAGAGCTCATGAGCAGACTTGATCGTCGTCACGATGGTA
GAGTTTTCTGGGAGGATTTCTTGGAGTTCTTCGATGATGCCGACGGAAGG
AGCTCCAACGGGTCCACGGAGCCATGGTTCCAGCTGGAGAGCAAGATCGC
ACAGAAGGATTTCTTGGAGTTCTTCGATGATGCCGACGGAAGGAGCTCCA
ACGGGTCCACGGAGCCATGGTTCCAGCTGGAGAGCAAGATCGCACAGAAG
CTGGTGGAATACATGAAAGGGCAAGGAGGGGTGGCGGCCAGACGATCGTG
GCTAAACAGCTTACATCGGTGTTTTCGGGATACCGACGTCAATCGAACTG
GTGTGCTAGATAACTGGTGGAATACATGAAAGGGCAAGGAGGGGTGGCGG
CCAGACGATCGTGGCTAAACAGCTTACATCGGTGTTTTCGGGATACCGAC
GTCAATCGAACTGGTGTGCTAGATAAAGAGGGATTTTCGAGGTGCTTCCA
GGCCATGCGCGGAGGACTGTCTGCCAAGGAAGTGCACAGACTATTCGCGG
CACTGCACGAGAGGGATTTTCGAGGTGCTTCCAGGCCATGCGCGGAGGAC
TGTCTGCCAAGGAAGTGCACAGACTATTCGCGGCACTGCACGACAAAACA
GGTGTTAAATATGCCACACTGGTCGAATTTCTTCAGAGCAACAACGCAAA
GTGGTATCAGACTGAGAAGGACATTGCAGACAAGACAAAACAGGTGTTAA
ATATGCCACACTGGTCGAATTTCTTCAGAGCAACAACGCAAAGTGGTATC
AGACTGAGAAGGACATTGCAGACAAGATCATCCGAGCCATGGGTTCAGAT
GAACCCTCTAGGCGAGCTTGGTTGGACCGTATAAGGCACCGCTTCATGAG
ATTGGATGCCTTCCGCGTGGGAGTTATGGGAGCATCGGATTTTCTCCAGA
CGCTAAGGGAAAACGGGTGTCATCTAACCTTTGACGATGAAGCGAGGCTC
TTAGATGCTCTGGAAACAGAAGATTCGGCGAGATCATCCGAGCCATGGGT
TCAGATGAACCCTCTAGGCGAGCTTGGTTGGACCGTATAAGGCACCGCTT
CATGAGATTGGATGCCTTCCGCGTGGGAGTTATGGGAGCATCGGATTTTC
TCCAGACGCTAAGGGAAAACGGGTGTCATCTAACCTTTGACGATGAAGCG
AGGCTCTTAGATGCTCTGGAAACAGAAGATTCGGCGAGGTATTACAGCGA
AGGAGATGTTTCTTACAGGGAACTACTTTTGTTTTGCGCTAGGCGCACTG
GAAGATGGAACGAAACCCAACCAAGACTTGCCCAAAGACTCCAGGAAGCA
CTTAGACGCCAGGTATTACAGCGAAGGAGATGTTTCTTACAGGGAACTAC
TTTTGTTTTGCGCTAGGCGCACTGGAAGATGGAACGAAACCCAACCAAGA
CTTGCCCAAAGACTCCAGGAAGCACTTAGACGCCAG
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