mRNA_H-elongata_contig7858.15528.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.290e-29 Identity = 159/386 (41.19%), Postives = 202/386 (52.33%), Query Frame = 1
Query: 1 RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCRYGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAS---TGSPEA-VXXXXXXXXXXXXXXXXXXXXXXXXXSNAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGLEGNSGDSSSSVVAWTLGL-HEGVFRTVMLFL 1137
RG LRG E+ I DL E +PK A ++ L AA G L +L+ AGA+ G A+H A+RGG+ ++ +L S D++G TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + RYG RE+S LD+ RT+I G DV A++ ALH A A+ T + A + + AGK G+V++VD LLRWGADE +G+ D +G P R+ + E V KLL NAPADRAWRRR V+CR+ + + S D + + A LGL EG+FRT++ F+
Sbjct: 7 RGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQL----------SSDRIARLEARVLGLVEEGIFRTIVRFI 382
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 102 bits (253), Expect = 2.220e-20 Identity = 197/400 (49.25%), Postives = 241/400 (60.25%), Query Frame = 1
Query: 31 IVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCRYGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASTGSPEAVXXXXXXXXXXXXXXXXXXXXXXXXXSN-AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRS---------LLRTVHVENLSR------------GLEGNS------GDSSSSVVAWTLGLHE-GVFRTVMLFL 1137
+VD +FE L+ + LA L L AAA G+++L RL+ AGA+ G A+H A+ GG+ +VSD+L E L+ D DG TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R + A R +I G DV A D+ TA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX AG+ G ++V++LLR GADE A+V G D++G + R+ DVERV +LL NAPADRAWRRRG+ +MCR+ + H N++R G+ G S G + + VV+ + L E G+FRT++ +L
Sbjct: 1 MVDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRSTQFKCPATHAAALEGHVEILRAIIEHGADVDAVDAQQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSLLTPLMKAGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 9.000e-14 Identity = 54/151 (35.76%), Postives = 75/151 (49.67%), Query Frame = 1
Query: 784 NAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVER--DVERVFKLLENAPADRAWRRRGFFVMCR-------------------------SLLRTVHVENLSRG------LEGNSGDSSSSVVAWTLGLHEGVFRTVMLFL 1137
+AG G V++VD LLRW ADE D G P ++VG P +V+RV+KLL+ AP DRAWRRRG V+CR S + V E ++ G +G + S++V LGL EG+FRT++ +L
Sbjct: 249 SAGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 399
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 3.690e-13 Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 787 AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVG-----ANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSL 1008
AG+ GV IVD LLR GADE A + DG +VVG A CP ++DVERV LLENAP DRAWRRRGF V+CR+
Sbjct: 216 AGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLN-KQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.760e-12 Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 787 AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVG-----ANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSL 1008
AG+ GV IVD LLR GADE A + DG +VVG A CP ++D+ERV LLENAPADRAWRRRG V+CR+
Sbjct: 265 AGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLN-KQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.630e-12 Identity = 187/418 (44.74%), Postives = 223/418 (53.35%), Query Frame = 1
Query: 1 RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCR--YGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASTGSP--EAVXXXXXXXXXXXXXXXXXXXXXXXXXSNAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVE----RDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVEN---------LSRGL---------------------EGNSGDSSSSVVAWTLGLHE-GVFRTVMLFL 1137
R LRG ++DLV +P+ AAWL+VPL A GDR+L + L+ GA+ G A++ AI G ++S +L + +S D +G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R Y S XXXXXXXXX V A D++ ALH A AS P E+ XXXXXXXXXXXXXXXXXXXXXX S AG+ G ++VD LLR GADE D +G P D VG +C + +V V +LL NAPADRAWRRRG V+CR+ LR + LSR EG +GD S + L E G+FR+V+ FL
Sbjct: 6 RKPLRGAALRVLDLVSAASTPEEWAAWLKVPLEIAVRTGDRDLASMLVRGGAEAGTAVNEAIACGDTEVMSLLLDNGASVSATDAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREWYDGAHRSXXXXXXXXXXXXXXXXXXXXXXXVNAGDNLFVPALHLAVAFNKVKAVKVLLEAGADIQGHSFSRSTPLHLASFKQPSVESAVXXXXXXXXXXXXXXXXXXXXXXAASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVG-HCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 3.770e-10 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 784 NAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRG 1044
+AG G V++VD LLRW ADEA D G P+++V P R+ +V+RV+K L+ AP DRAWR RG V+CR VH E L G
Sbjct: 461 SAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCR-----VHPERLVYG 544
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 4.560e-9 Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 799 GVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVERDVERV--FKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGL 1047
GV+++VD LLRWGA E A + G P +V HR + ER LL APADRAWRRRG+ VM R+ T + RGL
Sbjct: 286 GVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIAAQRRGL 370
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.070e-7 Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = 1
Query: 817 DTLLRWGADEAAADVDGLIPKD-VVGANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGLEG-----------NSGDSSS------SVVAWTLGLHEGVFRTVMLFL 1137
D LLRWGADE A D +G PK +VG++ + R +L+ AP DRAWRRRG +MCR+L V + RG GDS S ++A + L + VFRTV+ FL
Sbjct: 378 DLLLRWGADETAIDNEGYTPKARIVGSSNGSQALRH------MLDKAPVDRAWRRRGTLIMCRALPGIVSTTS-RRGXXXXXXXXXXXXXXRGGDSVSRRRGLGGLLARVVELDDAVFRTVVGFL 495
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G316_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 1.320e-7 Identity = 49/129 (37.98%), Postives = 61/129 (47.29%), Query Frame = 1
Query: 805 VKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRS------------------LLRTVHVENLSRGLEGNSGDSSSSVVAWTLGLHEGVFRTVMLFL 1137
V+ V LL+WGADE A D DG P D++ + P E V LL APADRAWRRRG+ VM S R+V + +RG G + VA + EGVFR V+ FL
Sbjct: 585 VEHVSLLLQWGADETALDRDGKTPADLIDESRPQH-----EAVRLLLARAPADRAWRRRGWLVMVFSRTPKAGGSXXXXXXXXXXXARSVKQQCGARG--GKESFDLFAAVAQLRVVEEGVFRNVVGFL 706 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7858.15528.1 >prot_H-elongata_contig7858.15528.1 ID=prot_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAback to top mRNA from alignment at H-elongata_contig7858:8335..9474- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7858.15528.1 ID=mRNA_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig7858:8335..9474- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7858:8335..9474- >mRNA_H-elongata_contig7858.15528.1 ID=mRNA_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig7858:8335..9474- (Himanthalia elongata Himel1 dioecious)back to top |