mRNA_H-elongata_contig78575.15527.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A6H5K843_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K843_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.120e-95 Identity = 184/342 (53.80%), Postives = 218/342 (63.74%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLPEKGVLASVLGGG------VRAFSDKPNARTSQSRSATRRSAAAEQRE----GLDVSASRAMEALENPRKIRWWKSGCGNEDGE----GKGIEGVLSPVDRA---TAVERFDGRVLLCPDESYQLMYAIKASAESGV---GR-------GSAVPSCRDAV---FEEGTHTLGQIELRWLTTMGESGSVRSAPVIFEAPDRREVE 936
SVLN + TTVL N LSAKLQSP+ R DLEDRR RGAS R NP LL+PSENLDMIVEHTL+ELG HTLRVTV++ AG PEGSE RSMRKFYRFSVMNPV ++ C +++GSP VE+QL NTTQMDLLLESC F+PE GV AS+LGGG + D+ N T + R + E G+ SA+ A R WW+ G GN G G G EG P D TAVERFDGRVLL P+E +QLMY+++ E+ GR G A + DA F EG+HTLG++E+ W TT GESGS+R PV+FEAPDR EVE
Sbjct: 79 SVLNHMSTTVLVNASLSAKLQSPTGRVDLEDRRTARGASVSRPNPAPLLSPSENLDMIVEHTLEELGTHTLRVTVKYHVAGDPEGSEPRSMRKFYRFSVMNPVSVNPVCTAVRGSPFVEVQLVNTTQMDLLLESCHFIPEGGVEASLLGGGEGGDPLAASPWDEGNENTDTASDGGARPPLQGEGEAGCEGVRTSAATTKGAWRRDRC--WWRGGGGNGRGPSLGGGAGEEGKSPPHDDRCLLTAVERFDGRVLLRPEEGHQLMYSVRPREETTSPPPGREGSLGAVGGAARAGGDAGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVE 418
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: D8LQ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ16_ECTSI) HSP 1 Score: 291 bits (745), Expect = 1.360e-91 Identity = 176/343 (51.31%), Postives = 211/343 (61.52%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLPEKGVLASVLGGG------VRAFSDKPNARTSQSRSATRRSAAAEQRE----GLDVSASRAMEALENPRKIRWWKSGCGNEDGEGKGI----EGVLSPVDRA---TAVERFDGRVLLCPDESYQLMYAIKASAESGV-------------GRGSAVPSCRDAVFEEGTHTLGQIELRWLTTMGESGSVRSAPVIFEAPDRREVEV 939
SVLN + TTVL N LSAKLQSP+ R DLEDRR RGAS R NP LL+PSENLDMIVEHTL+ELG HTLRVTV++ AG PEGSE RSMRKFYRFSVMNPV ++ C +++GSP VE+QL NTTQMDLLLESC F+PE GV AS+LGGG + D+ N +R R + E G+ S + A R+ RWW+ G EG P D TAVERFDGRVLL P+E +QLMY+++ E+ G A + F EG+HTLG++E+ W TT GESGS+R PV+FEAPDR EVEV
Sbjct: 79 SVLNHMSTTVLVNASLSAKLQSPTGRVDLEDRRTARGASVSRPNPAPLLSPSENLDMIVEHTLEELGTHTLRVTVKYHVAGDPEGSEPRSMRKFYRFSVMNPVSVNPVCTAVRGSPFVEVQLVNTTQMDLLLESCHFIPEGGVEASLLGGGEGGDPLAASPWDEDNETADTARDGGARPPLQGEGEAESGGVRTSTATTKGAR---RRDRWWRGGXXXXXXXXXXXXXXAEGKAPPHDDRCLLTAVERFDGRVLLRPEEGHQLMYSVRPKEETTPPPPGKEGYLDAVRGDARAGGDAGEGGFGEGSHTLGRVEVCWRTTTGESGSIRGGPVVFEAPDRPEVEV 418
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A835ZFD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFD5_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.690e-59 Identity = 132/315 (41.90%), Postives = 165/315 (52.38%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLPE--KGVLASVLGGGVRAFSDKPNARTSQSRSATRRSAAAEQREGLDVSASRAMEALENPRKIRWWKSGCGNEDGEGKGIEGVLSPVDRATAVERFDGRVLLCPDESYQLMYAIKASAESGVGRGSAVPSCRDAVFEEGTHTLGQIELRWLTTMGESGSVRSAPVIFEAPDRREVEV 939
SVLN + T L + +SAKLQ+PS R DL DRR RG P NP LL ++LDMIVEHTL ELG HTLRV V + A P G EA+S+RKFYRF+V+NP+ MSS C ++G PLVE+ +RNTTQMDLLLES +F+PE G A ++G A+ A + P S VD +A+E FD R+LL PDE++Q +Y + E G GR GTHTLG IEL W TTMGESGSV S P++ + + VEV
Sbjct: 113 SVLNSVDTP-LVDVDMSAKLQTPSAREDLADRRQDRGGGPPPQNPAPLLLNGQHLDMIVEHTLHELGTHTLRVAVTYRDALTPLGQEAKSLRKFYRFNVLNPINMSSTCLLVRGVPLVEVSIRNTTQMDLLLESYDFIPEVDSGYAAELIGKNA------------------------------------AVGANDTPASP-----------------PSSQSDVDGVSALECFDSRILLAPDETHQFVYRVTKGGELG-GR-----------LSRGTHTLGHIELSWRTTMGESGSVLSGPLVCDVQGKEGVEV 361
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A485LRM5_9STRA (Aste57867_24862 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRM5_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.560e-24 Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLP 417
SV+NQ L L+AKLQ+P+ R+DL DRR+ RG ++P +NP ++L+ NLDM VE+ L E+G+HTLRV V + P SEA+S+RKFYRF V+NP ++ IK VE +++N TQ L +E+ F+P
Sbjct: 44 SVINQFSCD-LHQVGLTAKLQTPTTRSDLSDRRLARGGTTPPTNPAAVLSAGSNLDMAVEYELNEIGVHTLRVGVSYL---DPITSEAKSLRKFYRFQVLNPFTITFKHVLIKDESYVEAKIQNITQTPLHVETIAFVP 178
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A067BMW3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BMW3_SAPPC) HSP 1 Score: 107 bits (267), Expect = 6.430e-23 Identity = 64/138 (46.38%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFL 414
SV+NQ L L+AKLQ+P+NR+DL D R++RG SSP NP+ LL NLDM VE+ L E+G+HTLRV V + P EA+S+RKFYRF+V+NP+ ++ I+ VE +++N TQ L +E+ FL
Sbjct: 59 SVINQFACD-LQQVGLTAKLQTPTNRSDLADTRVSRGGSSPPPNPMPLLPSGGNLDMAVEYELNEVGVHTLRVGVSYL---DPITLEAKSLRKFYRFNVLNPLTITFKHLLIQEESFVEAKIQNITQAPLHVETVHFL 192
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A6G0WM05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM05_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.320e-22 Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLP 417
SV+NQ L L+AKLQ+P++R+DL D+R +RG ++P NP L+ NLDM VE+ L E+G+HTLRV V + P SE +S+RKFYRF V+NP+ ++ IK VE ++ N TQ L +++ EF+P
Sbjct: 58 SVINQFACD-LHQVGLTAKLQTPTSRSDLLDKRSSRGGATPPMNPTPTLSAGSNLDMAVEYELNEVGVHTLRVGVTYL---DPLTSEPKSLRKFYRFQVLNPLTITFKHVLIKEESYVEAKIHNITQTPLHIDTIEFVP 192
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A1V9ZS54_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZS54_9STRA) HSP 1 Score: 107 bits (266), Expect = 5.040e-22 Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFL 414
SV+NQ L L+AKLQ+P+ R+DL D R +RG S P NP+ +L+ S NLDM VE+ L E+G+HTLRV V + P SE +S+RKFYRF+V+NP+ ++ IK VE +++N TQ L +E+ FL
Sbjct: 59 SVINQFSCN-LQQVGLTAKLQTPTTRSDLIDTRASRGGSMPPPNPIPVLSSSTNLDMAVEYELNEVGVHTLRVGVSYL---DPITSEPKSLRKFYRFNVLNPLTITFKHLLIKDESFVESKIQNITQAPLHIETVHFL 192
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A024TLV2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLV2_9STRA) HSP 1 Score: 104 bits (260), Expect = 5.770e-22 Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLP 417
SV+NQ L L+AKLQ+P+ R+DL D+R+ RG ++P NP+ +L NLDM VE L E+G+HTLRV V + P SE +S+RKFYRF V+NP+ ++ I+ VE +++N TQ+ L +S FLP
Sbjct: 58 SVINQFACD-LNQVGLTAKLQTPTTRSDLSDKRLLRGGTTPPMNPMPVLPAGSNLDMAVEFELNEVGVHTLRVGVSYV---DPVTSEPKSLRKFYRFQVLNPLTITLKHVLIQDESFVEAKVQNITQIPLHADSILFLP 192
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: A0A1V9YJP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJP5_9STRA) HSP 1 Score: 104 bits (259), Expect = 8.560e-22 Identity = 62/138 (44.93%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFL 414
SV+NQ L L+AKLQ+P+ R+DL D R++RG S+P NP+ +L NLDM VE+ L E+G+HTLRV V + P EA+S+RKFYRF+V+NP+ ++ I+ VE +++N TQ LL+E+ FL
Sbjct: 59 SVINQFACE-LQQVGLTAKLQTPTTRSDLVDTRVSRGGSTPPPNPMPVLLSGGNLDMAVEYELNEVGVHTLRVGVSYL---DPVTLEAKSLRKFYRFNVLNPLTITFKHLLIQDESYVEAKIQNITQGPLLVETVHFL 192
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Match: W4FDK6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDK6_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.740e-20 Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 1 SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNPSENLDMIVEHTLQELGMHTLRVTVQFEFAGAPEGSEARSMRKFYRFSVMNPVEMSSFCASIKGSPLVELQLRNTTQMDLLLESCEFLP 417
SV+NQ L L+AKLQ+P+ R+DL D+R RG ++P NP ++L+ NLDM VE L E+G+HTLRV V + P +E +S+RKFYRF V+NP+ ++ I+ VE +++N TQ+ L ++ F+P
Sbjct: 58 SVINQFACD-LNQVGLTAKLQTPTTRSDLTDKRELRGGTTPPVNPAAVLSAGSNLDMAVEFELSEVGVHTLRVGVSYL---DPLTNEPKSLRKFYRFQVLNPLTITFKHVLIQDISFVEAKIQNITQIPLHADTIVFVP 192 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78575.15527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78575.15527.1 >prot_H-elongata_contig78575.15527.1 ID=prot_H-elongata_contig78575.15527.1|Name=mRNA_H-elongata_contig78575.15527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp SVLNQLPTTVLANTYLSAKLQSPSNRADLEDRRMTRGASSPRSNPVSLLNback to top mRNA from alignment at H-elongata_contig78575:402..2788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78575.15527.1 ID=mRNA_H-elongata_contig78575.15527.1|Name=mRNA_H-elongata_contig78575.15527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-elongata_contig78575:402..2788- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78575:402..2788- >mRNA_H-elongata_contig78575.15527.1 ID=mRNA_H-elongata_contig78575.15527.1|Name=mRNA_H-elongata_contig78575.15527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig78575:402..2788- (Himanthalia elongata Himel1 dioecious)back to top |