mRNA_H-elongata_contig7851.15521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7851.15521.1
Unique NamemRNA_H-elongata_contig7851.15521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: D7FIA4_ECTSI (Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA4_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 1.040e-109
Identity = 192/343 (55.98%), Postives = 241/343 (70.26%), Query Frame = 1
Query:    1 QGGEDACFLLEND-----MGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTI---GKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGIILPRYSIE---ESQGKGGFELAASLWGFALDLGVLSGLKTRRGGGKKFTKRQNDSRMRAVSEKDALRFRGGKVDDITVVVATVQQ 996
            +GG+DA F+   D     +G+FDGVG WAS GHDPG F+RGFA+A A NITAQR EE+ S  ++  EG    R  +GV+L+QALEYAT N      +GTCTAC+VT+DP   +L+GVN+GDSGALLVRRDA GTPFVALR+ TQRH FNQPYQLGT SRDK  DA  F F+VREGD++VLATDGLLDNM+E+DI+RCI +A + +AE+ +       +P       DLA  LAR+AF LSRD +R+TPWEEEAVAAG+I  R S++     +GK   E  AS WG AL+  V +GL + R G     K Q+D R   + E+D   FRGGK+DDITV+VATV++
Sbjct:   65 RGGDDAYFVNVGDSGALDLGVFDGVGGWASLGHDPGVFSRGFAKATAANITAQRAEEAVSLRRSQLEGEPLPRIAQGVDLQQALEYATTNAALAGTQGTCTACVVTFDPVYGMLNGVNVGDSGALLVRRDARGTPFVALRTATQRHNFNQPYQLGTGSRDKAHDARDFLFYVREGDLVVLATDGLLDNMFESDILRCIEEAFEGDAETTAHEA--CDKP------VDLASALARKAFNLSRDKERLTPWEEEAVAAGVIPTRGSVDGPSTDRGKRRLEWDASKWGLALERSVTAGLNSFRRGAAGAPK-QDDRRDSIMPEEDTTSFRGGKMDDITVLVATVRR 398          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: A0A835Z8H6_9STRA (Protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H6_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.290e-57
Identity = 136/333 (40.84%), Postives = 178/333 (53.45%), Query Frame = 1
Query:    4 GGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGT----CTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGIILPRYSIEESQGKGGFELAASLWGFALDLGVLSGLKTRRGGGKKFTKRQNDSRMRAVSEKDALRFRGGKVDDITVVVATV 990
            GGEDA FLL  D+G+FDGVG +   G DP  F+R FA A A NITAQR    A        G       KGV+L  ALE+A  + + +GT    CTAC+ ++D    LL+G N+GDSG  ++RRD     FVA R+  Q+H FN PYQLGT S D P DAV F F+ R GDV+VLATDGL DN+++ DIV  +A A  R   +  A+  ++ +         +A  L  RA ELS D +R +PW   A  A +   R      +  G    AA+   F   LG L G              + +   RA++  +   + GGK+DDITVVVA V
Sbjct:   25 GGEDAFFLLPKDIGVFDGVGGFRKLGVDPAAFSRAFAAAAAHNITAQRARWEAIGGGGGGSGAQTVATFKGVDLRLALEHALSSAL-RGTRGGGCTACVASFDAASGLLTGANLGDSGLAVLRRDLSKRMFVAYRTTPQQHRFNMPYQLGTNSTDTPADAVQFRFYTRPGDVIVLATDGLFDNLFDEDIVETVA-ALLRRKHAGHAAAPVTPEA--------IAACLVLRAVELSADRERESPWHRAAAQARLAARR----RRRASG----AAAWRSFTRRLGELLG--------------ELEPGTRALAAYEGPAYEGGKLDDITVVVACV 325          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: A0A6S9M3S8_HETAK (Protein phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M3S8_HETAK)

HSP 1 Score: 179 bits (453), Expect = 1.140e-47
Identity = 107/250 (42.80%), Postives = 131/250 (52.40%), Query Frame = 1
Query:    4 GGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGII 753
            GGEDACF+  + +G+FDGVG WA+ G D G ++R  A   A NI  QR    +                  V+L  ALEYA  N    G+ TA +  +DPR  LL G N+GDSGAL +RRDA G  FV LR+  Q HGFN PYQLGT   D P DA  F F  R GDVLVLA+DG+LDN++E DI+ C+ +        A                   A   A  AF  S D +R  PWEE A  AG +
Sbjct:  110 GGEDACFVSSHSVGVFDGVGGWATLGVDTGLYSRELARLTALNIEEQRNTTGSD----------------AVDLVSALEYALKNNPNTGSTTAVVAAWDPRGGLLRGANLGDSGALCLRRDAAGEYFVLLRTAAQEHGFNFPYQLGTNCTDMPSDAELFEFAPRAGDVLVLASDGVLDNLFEQDIIDCVVETLASNNPEAVRRC---------------AKKCAETAFNFSIDAERKGPWEEGARKAGKL 328          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: A0A0M0JPE7_9EUKA (Protein phosphatase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JPE7_9EUKA)

HSP 1 Score: 134 bits (336), Expect = 6.250e-32
Identity = 90/260 (34.62%), Postives = 130/260 (50.00%), Query Frame = 1
Query:    4 GGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRR--DAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGIILPRYSIEE 777
            GGEDA F+  N  G+FDGVGSWAS G D G F+R  +       TA RL E   H+               + LE+ALE +       G+CTAC++  D     LS +N+GDSG  L R+     G P + + S  Q+H FN P+QLG  + D+PR+   +   V+ GD++VLATDGL DN+++ +I   +A                      GG    L+  +A  A ++S D  R +P+  EA A G  +P   +++
Sbjct:   28 GGEDAFFVQNNVFGVFDGVGSWASHGVDAGAFSRALSAG-----TASRLPERVGHSS-----------YSVLELEKALEASLSQVSVLGSCTACMLCVDCSSSTLSALNLGDSGFRLFRQLDSEAGAPRLEMGSRPQQHFFNCPFQLGGDNADRPRNGDRYTHAVQPGDLIVLATDGLFDNLFDDEIGALLAK---------------------GGTIEQLSERVASTARKVSFDTKRRSPFTVEARAQGYNMPGGKVDD 250          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: A0A7J7IP48_9RHOD (Protein phosphatase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP48_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 3.840e-31
Identity = 110/346 (31.79%), Postives = 163/346 (47.11%), Query Frame = 1
Query:    1 QGGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTY---------DPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVA-AGIILPRYSIEESQGKGGFELAASLWGFALDLGVLSGLKTRRGGGKKFTKRQNDSRMR--AVSEKDA-LRFRGGKVDDITVVVATVQQT 999
            +GGEDA F+ +   G+FDGVG W++ G DPG ++R  AE V     +  ++ ++S                   L   LE A       G+CTAC+V           D RR +L+ VN+GDSG +++R+       +  RS  Q+H FN PYQLGT S+D P DA      V+ GD LVL TDGL DN+++ +IV CI D C    E  +A+ +  L           AGT +  A  L  + D  T  E  + A     +   ++  +      ELA  L   A+                  T  ++++RM   A++ + A   + GGK+DD+TV+V  V +T
Sbjct:   95 RGGEDAFFITKRAAGVFDGVGGWSALGIDPGLYSRRLAELVRAGTES--MDATSS-------------------LVSVLERAAQTNEAVGSCTACVVALSTLMEAAEPDKRRSVLTCVNLGDSGMMVLRKGK-----IIFRSKEQQHYFNCPYQLGTQSKDTPYDAFVDRIDVQVGDWLVLGTDGLFDNVFDEEIVDCIRDWCRERTERRAAAPDDPLSAN--------AGTASPMASSLKTEADGRTAREMHSAADVDRAMTAPALLTAGAPALRELAERLARMAV------------------TCAEDENRMSPFALNARSAGFWYYGGKLDDVTVIVGRVSRT 388          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: M2WW57_GALSU (Protein phosphatase n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WW57_GALSU)

HSP 1 Score: 126 bits (316), Expect = 3.410e-29
Identity = 90/249 (36.14%), Postives = 124/249 (49.80%), Query Frame = 1
Query:    7 GEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGII 753
            GEDA F+ EN  G+FDGVG W +KG DP  +A   A     N TA+               + + R      +  ALEYA  +T   G+ TA +V Y   ++ L G+N+GDSG L VR+ +     V  R+  Q+H FN P+QLGT SR++ +D       +  GD L+L TDGL DNM   +I+  I   C  E          ++ P L      LA  LA+ A E S D ++ +P+ E A  AG I
Sbjct:   58 GEDAYFVEENAAGVFDGVGGWEAKGVDPSLYANELA-----NKTAE---------------LRKVRIKGSCQIVDALEYAAQSTTFMGSSTATVVAYCEEKDSLIGLNLGDSGFLQVRKGS-----VLFRTTEQQHFFNCPFQLGTGSRNRVQDGEFIDLRIEVGDWLILGTDGLFDNMKTEEILELIG--CYDE----------NVDPPL------LAHRLAQTAMEFSMDENKTSPFAENANEAGFI 263          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: R1DXK5_EMIHU (Protein phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DXK5_EMIHU)

HSP 1 Score: 122 bits (305), Expect = 7.110e-28
Identity = 89/252 (35.32%), Postives = 113/252 (44.84%), Query Frame = 1
Query:    4 GGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPF---VALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGI 750
            GGEDA F   +  G+FDGVG WA +G DPG F+R  A   A  +      E+A                   +L +AL+ A       GTCTACLV       L + +N+GDSG  L+R      P    V LRS  Q+H FN P+QLG  S D   D   +   VR GD+L+L TDG+ DN+ E  I   +A    R                 G  A  LA  LA  A E S    R +P+   A  AG+
Sbjct:   23 GGEDAWFARGSTFGVFDGVGGWAEQGIDPGLFSRALAVETAREVAGIEGAEAAEE-----------------DLARALDTARSRVTAVGTCTACLVHLSASGSLTA-LNLGDSGFRLLRPSRVSPPHRLAVTLRSREQQHRFNCPFQLGVGSGDSAADGAVYSGVVRAGDLLLLVTDGVTDNLSERQICEALAGPLAR-----------------GEPARSLAAALAASAHEASLQPGRSSPFAAAAQNAGL 239          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: J9IEU2_9SPIT (Protein phosphatase n=3 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IEU2_9SPIT)

HSP 1 Score: 122 bits (307), Expect = 5.610e-27
Identity = 89/253 (35.18%), Postives = 128/253 (50.59%), Query Frame = 1
Query:    1 QGGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPF--VALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLA--ADLAGTLARRAFELSRDNDRITPWEEEAVAAG 747
            +GGEDA     N + + DGVG W SKG DPG FAR     V T +   +L  S   N    + +     V  +NL + L      T  +GT T  L + D + ++++G+N+GDS  ++VR D        V  RS  Q++ FN PYQ GT + D P  A      V+  D++VL TDG+ DN+Y+ D+++C+    D   ES +AS   S Q  L  L    + +  LA  A +LS D    +P+   A AAG
Sbjct:  124 RGGEDAWIFTSNLLAVADGVGGWNSKGVDPGIFARELCSHVQT-VFFDKLSNSTGTNVEENKEVIADVRVMDINLIEVLCEGVRRTQARGTSTFVLTSIDQQSQVINGLNLGDSAYMIVRPDPNEESGFQVLFRSKEQQYRFNYPYQCGT-NYDLPTHADLNQHPVQHNDLIVLGTDGVFDNLYDIDVLKCLKPEVDYTNESNAASPTYSSQYDLYNLIHPQEASNCLANTAEKLSYDKTYDSPFSVGARAAG 374          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: A0A7S0BL10_9RHOD (Protein phosphatase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL10_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 1.600e-26
Identity = 68/192 (35.42%), Postives = 110/192 (57.29%), Query Frame = 1
Query:    1 QGGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIAD 576
            +GGEDA F+LE  MG+FDGVG WAS+G DPG ++R       + +T ++++E                   G +L +AL++A  N   +G+ TAC+    P  ++   +N+GDSG + +R   G    +  ++  Q+H FN P+QLG+   DK +D +     V+ GD L+LATDGLLDN+++ ++ + + D
Sbjct:   66 KGGEDAFFVLETAMGVFDGVGGWASQGIDPGLYSR-----KLSRLTEEQIKE-------------------GKDLAEALDHAHKNNDLQGSTTACIARILPGGKIAL-LNVGDSGLIAIRPSQG----IYFKTPDQQHYFNCPFQLGSTFEDKVKDGIAGEIPVQSGDYLILATDGLLDNLHDIELEKIVKD 228          
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Match: R1F9U6_EMIHU (Protein phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F9U6_EMIHU)

HSP 1 Score: 122 bits (305), Expect = 1.710e-26
Identity = 89/252 (35.32%), Postives = 113/252 (44.84%), Query Frame = 1
Query:    4 GGEDACFLLENDMGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEGMSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGDSGALLVRRDAGGTPF---VALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFFVREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGLGGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGI 750
            GGEDA F   +  G+FDGVG WA +G DPG F+R  A   A  +      E+A                   +L +AL+ A       GTCTACLV       L + +N+GDSG  L+R      P    V LRS  Q+H FN P+QLG  S D   D   +   VR GD+L+L TDG+ DN+ E  I   +A    R                 G  A  LA  LA  A E S    R +P+   A  AG+
Sbjct:   23 GGEDAWFARGSTFGVFDGVGGWAEQGIDPGLFSRALAVETAREVAGIEGAEAAEE-----------------DLARALDTARSRVTAVGTCTACLVHLSASGSLTA-LNLGDSGFRLLRPSRVSPPHRLAVTLRSREQQHRFNCPFQLGVGSGDSAADGAVYSGVVRAGDLLLLVTDGVTDNLSERQICEALAGPLAR-----------------GEPARSLAAALAASAHEASLQPGRSSPFAAAAQNAGL 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7851.15521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIA4_ECTSI1.040e-10955.98Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z8H6_9STRA2.290e-5740.84Protein phosphatase n=1 Tax=Tribonema minus TaxID=... [more]
A0A6S9M3S8_HETAK1.140e-4742.80Protein phosphatase n=1 Tax=Heterosigma akashiwo T... [more]
A0A0M0JPE7_9EUKA6.250e-3234.62Protein phosphatase n=1 Tax=Chrysochromulina tobin... [more]
A0A7J7IP48_9RHOD3.840e-3131.79Protein phosphatase n=1 Tax=Cyanidiococcus yangmin... [more]
M2WW57_GALSU3.410e-2936.14Protein phosphatase n=2 Tax=Galdieria sulphuraria ... [more]
R1DXK5_EMIHU7.110e-2835.32Protein phosphatase n=1 Tax=Emiliania huxleyi TaxI... [more]
J9IEU2_9SPIT5.610e-2735.18Protein phosphatase n=3 Tax=Oxytricha trifallax Ta... [more]
A0A7S0BL10_9RHOD1.600e-2635.42Protein phosphatase n=1 Tax=Rhodosorus marinus Tax... [more]
R1F9U6_EMIHU1.710e-2635.32Protein phosphatase n=1 Tax=Emiliania huxleyi TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7851contigH-elongata_contig7851:3727..7290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue2.7e-90
Seed eggNOG ortholog2880.D7FIA4
KEGG koko:K12815,ko:K14773,ko:K17508
KEGG Pathwayko03040,map03040
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0016043,GO:0016311,GO:0019538,GO:0035970,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0061024,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0104004,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0631@1,KOG1379@2759
EC3.1.3.16,3.6.4.13
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-11_001160.1
Exons5
Model size1538
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.1804805-UTR-H-elongata_contig7851:3726..37651622931190.1804805-UTR-H-elongata_contig7851:3726..3765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7851 3727..3765 +
1691679734.8101513-UTR-H-elongata_contig7851:3726..37651691679734.8101513-UTR-H-elongata_contig7851:3726..3765Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7851 3727..3765 +
1622931190.264632-UTR-H-elongata_contig7851:6841..72901622931190.264632-UTR-H-elongata_contig7851:6841..7290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7851 6842..7290 +
1691679734.8745015-UTR-H-elongata_contig7851:6841..72901691679734.8745015-UTR-H-elongata_contig7851:6841..7290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7851 6842..7290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.196155-CDS-H-elongata_contig7851:3765..38531622931190.196155-CDS-H-elongata_contig7851:3765..3853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 3766..3853 +
1691679734.8229196-CDS-H-elongata_contig7851:3765..38531691679734.8229196-CDS-H-elongata_contig7851:3765..3853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 3766..3853 +
1622931190.2083714-CDS-H-elongata_contig7851:4467..46281622931190.2083714-CDS-H-elongata_contig7851:4467..4628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 4468..4628 +
1691679734.8328748-CDS-H-elongata_contig7851:4467..46281691679734.8328748-CDS-H-elongata_contig7851:4467..4628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 4468..4628 +
1622931190.2190034-CDS-H-elongata_contig7851:5323..53971622931190.2190034-CDS-H-elongata_contig7851:5323..5397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 5324..5397 +
1691679734.842873-CDS-H-elongata_contig7851:5323..53971691679734.842873-CDS-H-elongata_contig7851:5323..5397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 5324..5397 +
1622931190.2346914-CDS-H-elongata_contig7851:5567..56991622931190.2346914-CDS-H-elongata_contig7851:5567..5699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 5568..5699 +
1691679734.8524697-CDS-H-elongata_contig7851:5567..56991691679734.8524697-CDS-H-elongata_contig7851:5567..5699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 5568..5699 +
1622931190.2505643-CDS-H-elongata_contig7851:6246..68411622931190.2505643-CDS-H-elongata_contig7851:6246..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 6247..6841 +
1691679734.861922-CDS-H-elongata_contig7851:6246..68411691679734.861922-CDS-H-elongata_contig7851:6246..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 6247..6841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7851.15521.1prot_H-elongata_contig7851.15521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7851 3766..6841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7851.15521.1

>prot_H-elongata_contig7851.15521.1 ID=prot_H-elongata_contig7851.15521.1|Name=mRNA_H-elongata_contig7851.15521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MGIFDGVGSWASKGHDPGEFARGFAEAVATNITAQRLEESASHNQNMKEG
MSRQRFVKGVNLEQALEYATVNTIGKGTCTACLVTYDPRRELLSGVNIGD
SGALLVRRDAGGTPFVALRSVTQRHGFNQPYQLGTASRDKPRDAVPFGFF
VREGDVLVLATDGLLDNMYETDIVRCIADACDREAESASASVNISLQPGL
GGLAADLAGTLARRAFELSRDNDRITPWEEEAVAAGIILPRYSIEESQGK
GGFELAASLWGFALDLGVLSGLKTRRGGGKKFTKRQNDSRMRAVSEKDAL
RFRGGKVDDITVVVATVQQTRALRSVDSAKVDQNSGLAATDGGRGFSGT*
back to top

mRNA from alignment at H-elongata_contig7851:3727..7290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7851.15521.1 ID=mRNA_H-elongata_contig7851.15521.1|Name=mRNA_H-elongata_contig7851.15521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3564bp|location=Sequence derived from alignment at H-elongata_contig7851:3727..7290+ (Himanthalia elongata Himel1 dioecious)
CAAGGAGGAGAAGACGCCTGCTTTCTGTTGGAGAACGACATGGGAATATT TGACGGCGTGGGAAGTTGGGCGTCAAAAGGGCATGATCCCGGGGAATTTG CGCGGGGTTTCGCGGAGGCCGTGGCAAGTGAGGGAAAGCGACTGTTGAAT ATTGAATATTTGACACTGCGTCGAGGCGAGCAGTATGCGGAACGCACTAT TATATTAGTGTACTGTTTCAAAATATCTTCTAACGAATCTTCTAACGAAA ACTTTATCAAAAGAAGGCCGGGCTATGGTGAATATTCACCATCAACTGAA TAGTTGTACTATAGCTCTTATCTCTTATTACCAAACGTAGGGAGCAGAAC GGAGGGTGATTAGGTCCAAGCGGGAGCTGTTGGGTGTTAAAACACATAGT CTATATGTTGTCGAGCGCGATCGATGCTATTTCATACTCAAAATGATGTA CTGTGGTTTGTATTTTTCTCCTTCGCCAGAGACCTTGTAGAGCTTCTTGT TGTACGTACAGTATTAATAGTAGACTACAGTATTATTAGTAGACTACAGT ATTAATAGTAGACTACAGTATTAATAGTGTAGCTGGTGCTATTACAGTCA AGGTCCAAATAAGTTAAATATTTATCATTACATATATATATATATCCTGT GTCCTGTTGAAACTTGCTTGGATTGGACCTGTGCCGTAAGGGTCGGCGTG CACCCAGGAATCATTCGCGTGCTCTTTGACGTGCCATGCAGCAAACATAA CAGCTCAGAGGTTAGAGGAGTCAGCTTCGCATAATCAAAACATGAAGGAG GGAATGAGTCGACAACGGTTCGTGAAAGGAGTCAACCTAGAGCAGGCGCT GGAATACGCCACAGTCAATACGATCGGCAAGGGAACCTGCACAGCCTGCT TGGTGAGGGTCAACGCCAACGCCGAAAACTTGACCGATTATAACCGCTCT AGCTATCTTCAGCCGCCACAATTAACTATGAAGTATACTTGAATATCCCC CCCCCCCCGGAATTTGTCGTACTTTGTCCCCTGGACTTGATTGTGCATGG CGTTAAGGTGTGGATTTTTTGGAGTATTTGAATGAGTTCATATGTTTTAA ATACATAGGTAGGATGCGGCATTGTGAATGTTTCTCTCGGGTCAAATATA ATAAACACCAAAACACGCGAATAGACTCGAAGATGCGCCATAAACATATT ATGATGAGAAACGAAGATGCGCCATAAACATATTATGATGACGTGGGGGC GATGTGTGTGTGTATGTTGTCATCCCATTTTATTCTGGACGTCAGACATA TGGACACATCAACCGAGGTCACACAGGAGGAAGGTCACACCAGATTTCTC TACTTTCCCTTGTCGACCGTAAAGTCGAATTTTGTGTACCCACGAAATAA TCGTTTTCCACTTGTTGGGCATGATGTGAGATAAAATCCCAGTTCGTGTG ACTGCGCCAAAATTCGAACTCACGTCCCAACGTCAGAAGGTTTCGAGGTT ACCAACTGAACCACCGGGGCGACCGGTGTGTGGTAGACTGATTATTCTTG TCAGTTCCGAGACATGGATCCCGTACGTCCGTTCGTGCTACTGACAGGTG ACATACGATCCGCGGCGCGAGTTGCTCAGCGGCGTGAACATTGGCGACTC CGGTGCCCTTCTTGTCCGCAGGTGCCACCAATGTTGATAGGAAATAAGCA TCATGACCTTATTACGTCTAGCTCTTCGCTGACGATGTTTTCGGTGGCTG GATCGGTTTGTACACAGAAGATATACAGGTGCAAAAAACAGTCCTCAAGA GACGCCTTGTGTTCGTTCATCATCGCATCTGCTGTATTAAGGGACGCCGG AGGGACGCCGTTCGTTGCATTGAGGTCCGTGACACAACGCCACGGGTTCA ACCAGCCCTACCAGCTTGGAACGGCAAGCCGAGACAAACCGAGGGATGCC GTTCCTTTTGGATTTTTTGTCAGGTGGGTGTGTTGTGTGTGTAATTATAA AATTGCACATAACCGCGCAATCCGGCCCTGTCATGCTAGTCATTCTAGGC TACACGCATTCATAGGACCTCCCAATGGGGGGTCAGTCATAAGTGTATGT ATGTGTGTGTGTATTTATTACATTGCACATAGCCGCGCAATCGAGCCCTG CCATGCTTGTCATTCAAGGCTACTCGCGTTGGTCTTAAAAATCGATGATC AGTCATATTTGTTACGAAAGCTCTGATCAGACGTGTCCTACATCAATATA CACGGTGGTAGGACTATGATATGATATGTCTTGAATGGTTCTGTCGTGCG AAGTGTGGTTATTGATACCGCACTACGATGATAGTTGAGCTATGGTTCAT GGCTAGGCCTGGCTGAATCGCCCACTGCTGGATCGTCGCTTTCCTGGTCT CCAAAAGGTAATGATGTAATGAGCGTGACACCATTTGTCATTTGCCGCAA ATAATACTTTCTGGTTTAACACGTGTGCTTCCATAAATTTTCGTCTCTCT CTCTCTATATATATATAAAGGGAGGGAGATGTGTTGGTATTGGCGACCGA CGGGCTTCTCGACAACATGTACGAGACTGACATCGTGCGCTGCATTGCCG ACGCCTGTGATCGCGAGGCCGAGTCAGCGTCAGCTTCTGTCAACATATCC CTCCAGCCAGGGTTGGGTGGACTGGCCGCCGATTTGGCGGGCACCTTAGC GCGTCGAGCCTTCGAGCTCTCGCGAGACAATGACAGGATTACTCCGTGGG AAGAGGAAGCCGTAGCAGCAGGGATCATTCTCCCGCGGTATTCGATTGAA GAATCTCAGGGAAAAGGCGGTTTTGAATTGGCTGCGTCGTTGTGGGGGTT TGCCCTTGACCTTGGCGTGTTGTCGGGGTTAAAGACTCGCCGGGGTGGTG GGAAGAAGTTCACGAAAAGACAGAACGACTCGCGAATGCGGGCAGTCTCA GAGAAGGATGCTCTCAGGTTTCGAGGAGGGAAGGTAGACGACATTACAGT AGTCGTGGCGACCGTACAGCAAACGCGAGCTCTAAGGTCAGTGGACAGCG CCAAGGTAGATCAAAATAGCGGTCTTGCGGCGACGGACGGGGGCAGAGGT TTTAGTGGTACATAGGGATGATAACACATTGGGATGAGGTTTAGAGAAAG CTTCATAGGACATATGATAACGGAGCACAAGTTGCGGATTGAGGTCATGT CATTACATGCTAGGGTACAATAGGCAGTTGGTTTAATCGTCCCGTGATCA CTTGTTGCCATACGGTTTTGACAGCAAACGAGGGCGGTGGGTACCCCTAC AGATGCTTTCATTCTGAGAATCGCAAGCGTGGTGGCCGTGGCATTTTTAA ACTCCGCCACGAGTAGGGAGCGACACCTGAGGGATGGAAAAAGCTTCACG GCTTTCGTTAGCGCTTCCTCATTATAATTATAATTTAACGTTGCGACGGT GTAAATATTATTCTAACATTGTTTTAGCTGTATGTAATGCCATTTAGGGG ATGAGTAAAGAAGGGAGAGAGAGGCCTGCACTATCGGCAAAAATGACAAA AAAGATCTCGCGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7851:3727..7290+

>mRNA_H-elongata_contig7851.15521.1 ID=mRNA_H-elongata_contig7851.15521.1|Name=mRNA_H-elongata_contig7851.15521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig7851:3727..7290+ (Himanthalia elongata Himel1 dioecious)
ATGGGAATATTTGACGGCGTGGGAAGTTGGGCGTCAAAAGGGCATGATCC
CGGGGAATTTGCGCGGGGTTTCGCGGAGGCCGTGGCAAATGGGAATATTT
GACGGCGTGGGAAGTTGGGCGTCAAAAGGGCATGATCCCGGGGAATTTGC
GCGGGGTTTCGCGGAGGCCGTGGCAACAAACATAACAGCTCAGAGGTTAG
AGGAGTCAGCTTCGCATAATCAAAACATGAAGGAGGGAATGAGTCGACAA
CGGTTCGTGAAAGGAGTCAACCTAGAGCAGGCGCTGGAATACGCCACAGT
CAATACGATCGGCAAGGGAACCTGCACAGCCTGCTTGCAAACATAACAGC
TCAGAGGTTAGAGGAGTCAGCTTCGCATAATCAAAACATGAAGGAGGGAA
TGAGTCGACAACGGTTCGTGAAAGGAGTCAACCTAGAGCAGGCGCTGGAA
TACGCCACAGTCAATACGATCGGCAAGGGAACCTGCACAGCCTGCTTGGT
GACATACGATCCGCGGCGCGAGTTGCTCAGCGGCGTGAACATTGGCGACT
CCGGTGCCCTTCTTGTCCGCAGGTGACATACGATCCGCGGCGCGAGTTGC
TCAGCGGCGTGAACATTGGCGACTCCGGTGCCCTTCTTGTCCGCAGGGAC
GCCGGAGGGACGCCGTTCGTTGCATTGAGGTCCGTGACACAACGCCACGG
GTTCAACCAGCCCTACCAGCTTGGAACGGCAAGCCGAGACAAACCGAGGG
ATGCCGTTCCTTTTGGATTTTTTGTCAGGGACGCCGGAGGGACGCCGTTC
GTTGCATTGAGGTCCGTGACACAACGCCACGGGTTCAACCAGCCCTACCA
GCTTGGAACGGCAAGCCGAGACAAACCGAGGGATGCCGTTCCTTTTGGAT
TTTTTGTCAGGGAGGGAGATGTGTTGGTATTGGCGACCGACGGGCTTCTC
GACAACATGTACGAGACTGACATCGTGCGCTGCATTGCCGACGCCTGTGA
TCGCGAGGCCGAGTCAGCGTCAGCTTCTGTCAACATATCCCTCCAGCCAG
GGTTGGGTGGACTGGCCGCCGATTTGGCGGGCACCTTAGCGCGTCGAGCC
TTCGAGCTCTCGCGAGACAATGACAGGATTACTCCGTGGGAAGAGGAAGC
CGTAGCAGCAGGGATCATTCTCCCGCGGTATTCGATTGAAGAATCTCAGG
GAAAAGGCGGTTTTGAATTGGCTGCGTCGTTGTGGGGGTTTGCCCTTGAC
CTTGGCGTGTTGTCGGGGTTAAAGACTCGCCGGGGTGGTGGGAAGAAGTT
CACGAAAAGACAGAACGACTCGCGAATGCGGGCAGTCTCAGAGAAGGATG
CTCTCAGGTTTCGAGGAGGGAAGGTAGACGACATTACAGTAGTCGTGGCG
ACCGTACAGCAAACGCGAGCTCTAAGGTCAGTGGACAGCGCCAAGGTAGA
TCAAAATAGCGGTCTTGCGGCGACGGACGGGGGCAGAGGTTTTAGTGGTA
CATAGGGAGGGAGATGTGTTGGTATTGGCGACCGACGGGCTTCTCGACAA
CATGTACGAGACTGACATCGTGCGCTGCATTGCCGACGCCTGTGATCGCG
AGGCCGAGTCAGCGTCAGCTTCTGTCAACATATCCCTCCAGCCAGGGTTG
GGTGGACTGGCCGCCGATTTGGCGGGCACCTTAGCGCGTCGAGCCTTCGA
GCTCTCGCGAGACAATGACAGGATTACTCCGTGGGAAGAGGAAGCCGTAG
CAGCAGGGATCATTCTCCCGCGGTATTCGATTGAAGAATCTCAGGGAAAA
GGCGGTTTTGAATTGGCTGCGTCGTTGTGGGGGTTTGCCCTTGACCTTGG
CGTGTTGTCGGGGTTAAAGACTCGCCGGGGTGGTGGGAAGAAGTTCACGA
AAAGACAGAACGACTCGCGAATGCGGGCAGTCTCAGAGAAGGATGCTCTC
AGGTTTCGAGGAGGGAAGGTAGACGACATTACAGTAGTCGTGGCGACCGT
ACAGCAAACGCGAGCTCTAAGGTCAGTGGACAGCGCCAAGGTAGATCAAA
ATAGCGGTCTTGCGGCGACGGACGGGGGCAGAGGTTTTAGTGGTACATAG
back to top