mRNA_H-elongata_contig78435.15512.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI) HSP 1 Score: 265 bits (677), Expect = 2.010e-88 Identity = 126/154 (81.82%), Postives = 143/154 (92.86%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
S+VRNKVKYMQ+KKKRHNTNP RGPYHFRSP++IFWRTVRGMLP KT RG+EAL RLSCFEGIP P+DKKKRMVVPNALQVIR+APGRRFCVLGRLS EVGWPH +LIKRLEAQRK+KSEAYYVDKKA K++K+ A A+A+L++V PVLEE+GF
Sbjct: 45 SLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA) HSP 1 Score: 235 bits (599), Expect = 1.550e-76 Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
S+VRNKVKY QF+KKR NTNP+RGP+HFRSP++IFWRT+RGM+PHKT RGQ A+ RL FEGIP PFDK+KRMVVP AL+V+R+APGR+ CVLGRLSTEVGW HGDL++RLEA+RKV+SEA+Y KKAN +++ AEA ADLS+VTPVLE +G
Sbjct: 46 SLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP) HSP 1 Score: 209 bits (532), Expect = 2.330e-66 Identity = 103/151 (68.21%), Postives = 121/151 (80.13%), Query Frame = 1
Query: 7 VRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
+R K KY+ F +KR NTNPSRGP+HFR+PS+IFWRTVRGMLPHKTERGQEAL RL FEGIP P+DK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + D++ RLE +RKV S AYY KKA ++K A ADLS VTPVLE FG
Sbjct: 47 IRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA) HSP 1 Score: 201 bits (510), Expect = 4.520e-63 Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSS 432
S+ RNKVKY QF KKR NTNP+RGP+HFRSP++IFWRT+RGMLPHKT RGQ AL RL+CFEGIPEP+DKKKR+VVP+AL+ +R+ R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA +K A A ADLS+
Sbjct: 51 SLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S3H512_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H512_9STRA) HSP 1 Score: 198 bits (504), Expect = 4.060e-62 Identity = 96/154 (62.34%), Postives = 119/154 (77.27%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
S+ RNK+KY QF KKR NTNP RGP+HFRSP++IFWRT+RGMLPHKT +GQ AL RL+ FEGIPEP+DKKKR+VVP+AL+ +R+ R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA +K A A ADLS V +L G+
Sbjct: 44 SLTRNKIKYAQFIKKRMNTNPRRGPFHFRSPARIFWRTLRGMLPHKTVKGQLALGRLAAFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQIALKSKATASADLSPVNAILAPLGY 197
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA) HSP 1 Score: 196 bits (499), Expect = 3.870e-61 Identity = 95/155 (61.29%), Postives = 120/155 (77.42%), Query Frame = 1
Query: 4 VVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQA--DLSSVTPVLEEFGF 462
+VRN +YMQF +KR NTNP RGP+H+R+PS+I WRT+RGMLPHKT RG +AL RL+ FEGIP P+D KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RK+K+EAYY KKA K AE +A +LS+V VL FG+
Sbjct: 48 LVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD) HSP 1 Score: 195 bits (495), Expect = 9.770e-61 Identity = 91/152 (59.87%), Postives = 120/152 (78.95%), Query Frame = 1
Query: 7 VRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
+RNK KY+ F +KR NTNP+RGP HFRSPSK+FWRTVRGMLPHKT+RG +AL RL FEGIP P+DK KRMVVPNAL+V+R+ P R++C LGR+++EVGW + D++ RLEA+RKV SEAYY KKA +++ A+A A + + L+ +G+
Sbjct: 47 IRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: UPI000A2A5613 (60S ribosomal protein L13a n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5613) HSP 1 Score: 193 bits (490), Expect = 1.050e-59 Identity = 91/156 (58.33%), Postives = 121/156 (77.56%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQ--ADLSSVTPVLEEFGF 462
+ RNK+KY+ F +KR NT PS GP+HFR+PS+IFWRTVRGM+PHKT+RG EA+ RL F+G+P P+DK+KRMVVP+AL+VIR+ PGR+FCVLGRLS EVGW + D+I LE +RK KS Y+ KK +++K+ AE ++L SV VLE +G+
Sbjct: 63 NFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 218
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.350e-59 Identity = 92/154 (59.74%), Postives = 120/154 (77.92%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 462
S++RNKVK+ +++KRH TNP +GP H+RSP+++ WR VRGMLPHKT RGQ AL RL+ FEGIP P+DKKKR+VVP AL+V+R+ PGR+F VL L+ EVGW H DLI+RLE +RK++++A+Y KKA K A A DLS+VTPVLE G+
Sbjct: 46 SLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN) HSP 1 Score: 190 bits (483), Expect = 6.700e-59 Identity = 92/153 (60.13%), Postives = 114/153 (74.51%), Query Frame = 1
Query: 1 SVVRNKVKYMQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 459
S+VRNKVK+ F KKR NTNP RGP H+RSP+++ WRTVRGMLPHKT RGQ+AL RL CFEG+P P+DK K+MVVP AL+V+R+ PGRRF VL RL++E GW H LI ++E +R +S +Y KK+ +K A A ADLS V VLE FG
Sbjct: 46 SLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78435.15512.1 >prot_H-elongata_contig78435.15512.1 ID=prot_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCback to top mRNA from alignment at H-elongata_contig78435:1368..2889- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78435.15512.1 ID=mRNA_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1522bp|location=Sequence derived from alignment at H-elongata_contig78435:1368..2889- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78435:1368..2889- >mRNA_H-elongata_contig78435.15512.1 ID=mRNA_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig78435:1368..2889- (Himanthalia elongata Himel1 dioecious)back to top |