mRNA_H-elongata_contig78398.15508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78398.15508.1
Unique NamemRNA_H-elongata_contig78398.15508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: D8LS99_ECTSI (NPL4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS99_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.110e-33
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 243
            MIIRVRTHAG+WRV+ + P+TTI +LR++LSTEHNANLSD  RQPLTL PNPRG+++ L L +TLQSLGL HGDM+HL+LD
Sbjct:    1 MIIRVRTHAGVWRVNDVAPDTTIKELRQRLSTEHNANLSDDTRQPLTLKPNPRGDQDTLALESTLQSLGLGHGDMIHLNLD 81
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A2D4BKB6_PYTIN (NPL4-like protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKB6_PYTIN)

HSP 1 Score: 53.9 bits (128), Expect = 2.920e-7
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 243
            M+IRVR+  G+WRV+GLT ++TIAD+++ +  EH A   D  R  L        + E      TL+ L L HGDM+ L  D
Sbjct:    1 MLIRVRSKNGIWRVNGLTSQSTIADIKQWVENEH-AIARDTQRLALDQQGTRVAQNE-----QTLRDLRLGHGDMLFLDYD 75
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A329S327_9STRA (MPN domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A329S327_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-6
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 243
            M+IRVR+  G WRV GLTP +TI D++R +  +H+      A+Q LTL  + +G ++      TL+ L + HGDM+ L  D
Sbjct:    1 MLIRVRSKNGTWRVGGLTPSSTITDIKRWIFEQHSIAP---AQQQLTL--DQQGVQQTTD-TQTLRELRVGHGDMLFLDYD 75
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A662YIT1_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIT1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-6
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 243
            M+IRVR+  G WRV+G+TP +T+AD++R +S +H       A +   L  + +G +     + TL+ L + HGDM+ L  D
Sbjct:    1 MLIRVRSKTGTWRVEGVTPSSTVADVKRWISEQHAI-----APELQQLSLDQQGTRPATD-SQTLRELKVGHGDMLFLAYD 75
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A3M6V929_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V929_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 243
            M++RVR+  G WRV+ LTP +TIAD++R +  +H+ +     +Q LTL      +        TL+ L + HGDM+ L  D
Sbjct:    1 MLVRVRSKNGTWRVEDLTPSSTIADIKRWIFEQHSISPQ---KQHLTLDLQSMQKTTD---TQTLRELRVGHGDMLFLDYD 75
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BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A0P1A5Q7_PLAHL (Nuclear pore complex, rNpl4 component (Sc Npl4) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5Q7_PLAHL)

HSP 1 Score: 49.3 bits (116), Expect = 6.670e-5
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLA--ATLQSLGLRHGDMVHLHLD 243
            MIIRVR+  G+WR++ LTP +TIAD++  +  +H+   +    Q LTL      ++  +  A   TL++L L HGDM+ L  +
Sbjct:    1 MIIRVRSKNGIWRIENLTPSSTIADIKLWIFEQHSIAPT---HQRLTL-----DQQATMQTADTQTLRTLQLGHGDMLFLDYE 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LS99_ECTSI5.110e-3371.60NPL4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2D4BKB6_PYTIN2.920e-740.74NPL4-like protein (Fragment) n=1 Tax=Pythium insid... [more]
A0A329S327_9STRA1.140e-640.74MPN domain-containing protein n=19 Tax=Phytophthor... [more]
A0A662YIT1_9STRA1.150e-637.04Ubiquitin-like domain-containing protein (Fragment... [more]
A0A3M6V929_9STRA1.910e-537.04Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1A5Q7_PLAHL6.670e-537.35Nuclear pore complex, rNpl4 component (Sc Npl4) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78398contigH-elongata_contig78398:1944..2186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.4e-27
Seed eggNOG ortholog2880.D8LS99
KEGG koko:K14015
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0032182,GO:0033554,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.modification-dependent protein catabolic process
EggNOG OGsCOG5100@1,KOG2834@2759
COG Functional cat.Y
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-12_004310.1
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.7799575-CDS-H-elongata_contig78398:1943..21861622931188.7799575-CDS-H-elongata_contig78398:1943..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78398 1944..2186 -
1691679734.2222922-CDS-H-elongata_contig78398:1943..21861691679734.2222922-CDS-H-elongata_contig78398:1943..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78398 1944..2186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78398.15508.1prot_H-elongata_contig78398.15508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78398 1944..2186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78398.15508.1

>prot_H-elongata_contig78398.15508.1 ID=prot_H-elongata_contig78398.15508.1|Name=mRNA_H-elongata_contig78398.15508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVP
NPRGEKECLPLAATLQSLGLRHGDMVHLHLD
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mRNA from alignment at H-elongata_contig78398:1944..2186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78398.15508.1 ID=mRNA_H-elongata_contig78398.15508.1|Name=mRNA_H-elongata_contig78398.15508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig78398:1944..2186- (Himanthalia elongata Himel1 dioecious)
ATGATTATTCGAGTTAGGACACACGCTGGAATGTGGCGTGTCGACGGCCT
AACCCCAGAAACGACCATCGCCGACTTGCGACGGAAGTTGAGCACGGAGC
ACAATGCGAACCTGTCCGACGGTGCCCGACAGCCGCTGACACTGGTGCCA
AACCCTAGGGGGGAGAAGGAGTGTCTTCCACTGGCGGCAACTCTTCAGTC
TCTAGGGCTTAGACATGGGGATATGGTGCATCTTCACCTTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig78398:1944..2186-

>mRNA_H-elongata_contig78398.15508.1 ID=mRNA_H-elongata_contig78398.15508.1|Name=mRNA_H-elongata_contig78398.15508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig78398:1944..2186- (Himanthalia elongata Himel1 dioecious)
ATGATTATTCGAGTTAGGACACACGCTGGAATGTGGCGTGTCGACGGCCT
AACCCCAGAAACGACCATCGCCGACTTGCGACGGAAGTTGAGCACGGAGC
ACAATGCGAACCTGTCCGACGGTGCCCGACAGCCGCTGACACTGGTGCCA
AACCCTAGGGGGGAGAAGGAGTGTCTTCCACTGGCGGCAACTCTTCAGTC
TCTAGGGCTTAGACATGGGGATATGGTGCATCTTCACCTTGACATGATTA
TTCGAGTTAGGACACACGCTGGAATGTGGCGTGTCGACGGCCTAACCCCA
GAAACGACCATCGCCGACTTGCGACGGAAGTTGAGCACGGAGCACAATGC
GAACCTGTCCGACGGTGCCCGACAGCCGCTGACACTGGTGCCAAACCCTA
GGGGGGAGAAGGAGTGTCTTCCACTGGCGGCAACTCTTCAGTCTCTAGGG
CTTAGACATGGGGATATGGTGCATCTTCACCTTGAC
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