mRNA_H-elongata_contig78350.15505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78350.15505.1
Unique NamemRNA_H-elongata_contig78350.15505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.070e-121
Identity = 189/205 (92.20%), Postives = 200/205 (97.56%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSLV 615
            QNTAAKSLLYECIHTMTLALPFTRKADGTESKA+PAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHR+LVLACLSDDD+TIRTRALELL+GMVTKRNLEDLVLNLLQHVARAEG+YRDELI KII VCSRDKYAYLSNFRWYTGVL+DLS VEGSKHGDALALQ+ DVSLRVEEVREYA+HK+VGLLL+ SL+
Sbjct:  256 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAVPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRALVLACLSDDDITIRTRALELLTGMVTKRNLEDLVLNLLQHVARAEGTYRDELIAKIILVCSRDKYAYLSNFRWYTGVLIDLSRVEGSKHGDALALQLTDVSLRVEEVREYALHKSVGLLLEPSLI 460
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: F0YKL7_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKL7_AURAN)

HSP 1 Score: 291 bits (746), Expect = 2.000e-92
Identity = 141/204 (69.12%), Postives = 170/204 (83.33%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSL 612
            QNTAAKSL YECIHT+TLALPFT+KADGTES+ +P  VRLC++HLR+F +D DQNLKYLGLVGFV LM+SHP+AV EH+ LVL CLSDDDVTIRTRALELL+GMVT++NLE+LV+ LL HV RAEG+YRDELI +I+ +CSRDKY+YLS+F WY  VLV L+H+ GS HG  LA Q++D+++RV  VR YA    V LLLD  L
Sbjct:  247 QNTAAKSLQYECIHTLTLALPFTKKADGTESRNVPGVVRLCADHLRQFIDDADQNLKYLGLVGFVELMKSHPKAVVEHKELVLLCLSDDDVTIRTRALELLTGMVTRKNLEELVVKLLAHVNRAEGAYRDELISRIVHMCSRDKYSYLSDFVWYLSVLVRLAHLRGSAHGALLAEQLVDITMRVRPVRRYAARDMVCLLLDDKL 450
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A835Z6U0_9STRA (Clathrin/coatomer adaptor, adaptin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U0_9STRA)

HSP 1 Score: 281 bits (719), Expect = 9.410e-90
Identity = 138/205 (67.32%), Postives = 173/205 (84.39%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVE----GSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLD 603
            QNTAAKSLLYECIHT+TLALPFT+K DG+ES+A+P  V+LC+++LR F +DPDQNLKYLGLVG+VNLM+SHPRAVAE R LVLACL+DDDVTIRTRALELL+GMVTKR LE+LV+ LL+HV  AEG+YR++LI KI+ +CSRDKYA+L +F+WYTG LV+L+ ++     +  G  LA Q++DV+LRVE VR +AV    GLLL+
Sbjct:  256 QNTAAKSLLYECIHTVTLALPFTKKEDGSESRAVPVVVKLCADNLRNFIQDPDQNLKYLGLVGYVNLMQSHPRAVAESRELVLACLTDDDVTIRTRALELLTGMVTKRTLEELVVQLLKHVVAAEGAYREDLIAKIVLMCSRDKYAFLVDFQWYTGALVELARMDHGCRSAATGALLASQLIDVALRVESVRAFAVEAMAGLLLE 460
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A7S3ZNU4_9STRA (AP-3 complex subunit delta n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNU4_9STRA)

HSP 1 Score: 287 bits (735), Expect = 1.800e-87
Identity = 140/205 (68.29%), Postives = 170/205 (82.93%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGS-KHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSL 612
            QNTAAKSL YECIHT+TLALP+T+KADG++S+  P  VRLC++HLR+F +DPDQNLKYLGLVGFV LM+SHPRAV EHR LVL CLSDDDVTIRTRALELL+GMVT++ LEDLVL LL HV +A+G+YRDEL+ +II VCSRDKYAYLS+F WY  VLV L+ + G+ KHG  LA Q++D+++RV  VR +A   A+ LLLD  L
Sbjct:  256 QNTAAKSLQYECIHTLTLALPYTKKADGSDSRNAPGVVRLCADHLRQFVDDPDQNLKYLGLVGFVELMKSHPRAVVEHRELVLLCLSDDDVTIRTRALELLTGMVTRKTLEDLVLKLLAHVRQADGAYRDELVSRIILVCSRDKYAYLSDFVWYLNVLVQLARLRGAQKHGALLASQLVDITMRVRPVRAFAARDALRLLLDDKL 460
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A7S2MSV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSV1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 7.410e-86
Identity = 137/205 (66.83%), Postives = 172/205 (83.90%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSLV 615
            QNTAAKSL YECIHT+TLALP+T+++DG++SK +PA V+LC+EHLR+F ED DQNLKYLGLVGFV LMRSHPR V EH+ LVL+CLSDDDVTIR RALELL+GMVTKRN+E+LV  LL+ V  +EG+YRDELI KIIF+CSR+KY +L++F WY  VLVDL+ V+GS HG  +A Q++DV++RVE VR +AV   +GLL +  L+
Sbjct:  255 QNTAAKSLQYECIHTVTLALPYTKRSDGSDSKNVPAVVKLCAEHLRQFVEDDDQNLKYLGLVGFVQLMRSHPRTVVEHKELVLSCLSDDDVTIRMRALELLTGMVTKRNMEELVHKLLRFVLLSEGTYRDELISKIIFMCSRNKYEFLTDFAWYLSVLVDLATVQGSFHGKNVADQLIDVTVRVEPVRVFAVESMIGLLTNVKLM 459
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A7S2UXN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXN7_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.810e-85
Identity = 131/203 (64.53%), Postives = 163/203 (80.30%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGS--KHGDALALQVMDVSLRVEEVREYAVHKAVGLLLD 603
            QNTAAKSLLYECIHT+TLALPFT+K+DG+E+K +P  VRLC E+L+ F ED DQNLKYLGLV  V LMRSHPRAV E +  +L CL DDD+TIRT+ALELLSGM TKRNLE+LV   LQHV +AEGSYR EL+ KI+F+CSRDKY +L +F WY  VLVDL+H++G+   HG+ +A Q++D+++RV+ VR Y V   + LLLD
Sbjct:  258 QNTAAKSLLYECIHTITLALPFTKKSDGSEAKGVPGIVRLCMENLQGFVEDTDQNLKYLGLVALVELMRSHPRAVLEQKENILRCLKDDDITIRTKALELLSGMATKRNLEELVHKFLQHVYQAEGSYRTELVAKILFMCSRDKYNFLEDFAWYMSVLVDLAHLQGTGRAHGERIAQQLVDINMRVDSVRAYTVEAMLKLLLD 460
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A6S9KYZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYZ5_HETAK)

HSP 1 Score: 268 bits (684), Expect = 5.100e-83
Identity = 132/206 (64.08%), Postives = 161/206 (78.16%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGS-KHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSLV 615
            QNT AKSLLYECI+T+T ALP TRKADGT+++  PA VRLCSE LR   EDPD NLKYLGLV    LM+SHPR    H+  +L CL+D+DVTIRTRALELL+GMVTKRNLE+LV   LQHVA AEG+YRD L+ KI+F+C+RDKYAYL +F WY  VLVDL+H++GS KHG  LA Q+ DV++RVE VR Y V   + L+LD +++
Sbjct:  256 QNTGAKSLLYECIYTVTKALPHTRKADGTDARNAPAVVRLCSEQLRLLIEDPDANLKYLGLVALSELMKSHPREAVGHKDNILKCLNDEDVTIRTRALELLTGMVTKRNLEELVHKFLQHVATAEGTYRDTLVEKILFMCARDKYAYLEDFAWYMSVLVDLAHLQGSDKHGAQLAAQIRDVAMRVESVRAYTVEAMLKLVLDPTVI 461
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: W7TQ06_9STRA (Ap-3 complex subunit delta-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ06_9STRA)

HSP 1 Score: 270 bits (689), Expect = 3.620e-81
Identity = 137/207 (66.18%), Postives = 165/207 (79.71%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRK----ADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQS 609
            QNTAAKSLLYECIHT+TLALP+ RK    A+G   + + A V LC++HLR+F EDPDQNLKYLGLVGFVNLM+S PRAV EH+ LVL CLSDDDVTIR RALELL+GMVT+RNL +LV  L+QHV  AEG YRDE++ KI+F+CSRD+YAYLS+  WY  VLVDL++V+G  HG  +A Q++DVS+R E VR YAV   +GLL D S
Sbjct:  256 QNTAAKSLLYECIHTVTLALPYARKPGESAEG--GRNLQAVVALCADHLRQFVEDPDQNLKYLGLVGFVNLMKSFPRAVVEHKELVLLCLSDDDVTIRMRALELLTGMVTRRNLTELVHKLMQHVLLAEGPYRDEIVRKILFMCSRDRYAYLSDVSWYLSVLVDLAYVQGPVHGPLVAAQLIDVSVRAEVVRGYAVRCMLGLLRDSS 460
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BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A7S4DBC7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBC7_HETAK)

HSP 1 Score: 268 bits (684), Expect = 3.450e-80
Identity = 132/206 (64.08%), Postives = 161/206 (78.16%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGS-KHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQSLV 615
            QNT AKSLLYECI+T+T ALP TRKADGT+++  PA VRLCSE LR   EDPD NLKYLGLV    LM+SHPR    H+  +L CL+D+DVTIRTRALELL+GMVTKRNLE+LV   LQHVA AEG+YRD L+ KI+F+C+RDKYAYL +F WY  VLVDL+H++GS KHG  LA Q+ DV++RVE VR Y V   + L+LD +++
Sbjct:  256 QNTGAKSLLYECIYTVTKALPHTRKADGTDARNAPAVVRLCSEQLRLLIEDPDANLKYLGLVALSELMKSHPREAVGHKDNILKCLNDEDVTIRTRALELLTGMVTKRNLEELVHKFLQHVATAEGTYRDTLVEKILFMCARDKYAYLEDFAWYMSVLVDLAHLQGSDKHGAQLAAQIRDVAMRVESVRAYTVEAMLKLVLDPTVI 461
[Close]
BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Match: A0A4D9D9W4_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9W4_9STRA)

HSP 1 Score: 270 bits (689), Expect = 4.260e-80
Identity = 137/207 (66.18%), Postives = 165/207 (79.71%), Query Frame = 1 
Query:    1 QNTAAKSLLYECIHTMTLALPFTRK----ADGTESKAMPAAVRLCSEHLRKFTEDPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALELLSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSNFRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLLDQS 609
            QNTAAKSLLYECIHT+TLALP+ RK    A+G   + + A V LC++HLR+F EDPDQNLKYLGLVGFVNLM+S PRAV EH+ LVL CLSDDDVTIR RALELL+GMVT+RNL +LV  L+QHV  AEG YRDE++ KI+F+CSRD+YAYLS+  WY  VLVDL++V+G  HG  +A Q++DVS+R E VR YAV   +GLL D S
Sbjct:  256 QNTAAKSLLYECIHTVTLALPYARKPGESAEG--GRNLQAVVALCADHLRQFVEDPDQNLKYLGLVGFVNLMKSFPRAVVEHKELVLLCLSDDDVTIRMRALELLTGMVTRRNLTELVHKLMQHVLLAEGPYRDEIVRKILFMCSRDRYAYLSDVSWYLSVLVDLAYVQGPVHGPLVAAQLIDVSVRAEVVRGYAVRCMLGLLRDSS 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78350.15505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI1.070e-12192.20AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
F0YKL7_AURAN2.000e-9269.12Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A835Z6U0_9STRA9.410e-9067.32Clathrin/coatomer adaptor, adaptin-like protein n=... [more]
A0A7S3ZNU4_9STRA1.800e-8768.29AP-3 complex subunit delta n=4 Tax=Pelagomonas cal... [more]
A0A7S2MSV1_9STRA7.410e-8666.83Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2UXN7_9STRA1.810e-8564.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6S9KYZ5_HETAK5.100e-8364.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TQ06_9STRA3.620e-8166.18Ap-3 complex subunit delta-1 n=2 Tax=Nannochlorops... [more]
A0A7S4DBC7_HETAK3.450e-8064.08Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9W4_9STRA4.260e-8066.18Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78350contigH-elongata_contig78350:333..2587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue6.2e-103
Seed eggNOG ortholog2880.D7FZK5
Preferred nameAP3D1
KEGG koko:K12396
KEGG Pathwayko04142,map04142
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1059@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCoatomer protein complex,delta sub-unit
Ec32 orthologEc-01_010090.1
Exons5
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78350.15505.1prot_H-elongata_contig78350.15505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78350 333..2587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.408296-CDS-H-elongata_contig78350:332..5091622931188.408296-CDS-H-elongata_contig78350:332..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 333..509 +
1691679734.0742304-CDS-H-elongata_contig78350:332..5091691679734.0742304-CDS-H-elongata_contig78350:332..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 333..509 +
1622931188.4222336-CDS-H-elongata_contig78350:1120..12501622931188.4222336-CDS-H-elongata_contig78350:1120..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 1121..1250 +
1691679734.0917523-CDS-H-elongata_contig78350:1120..12501691679734.0917523-CDS-H-elongata_contig78350:1120..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 1121..1250 +
1622931188.434026-CDS-H-elongata_contig78350:1501..16101622931188.434026-CDS-H-elongata_contig78350:1501..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 1502..1610 +
1691679734.1056216-CDS-H-elongata_contig78350:1501..16101691679734.1056216-CDS-H-elongata_contig78350:1501..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 1502..1610 +
1622931188.4474673-CDS-H-elongata_contig78350:2134..22131622931188.4474673-CDS-H-elongata_contig78350:2134..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 2135..2213 +
1691679734.1241095-CDS-H-elongata_contig78350:2134..22131691679734.1241095-CDS-H-elongata_contig78350:2134..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 2135..2213 +
1622931188.4660633-CDS-H-elongata_contig78350:2467..25871622931188.4660633-CDS-H-elongata_contig78350:2467..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 2468..2587 +
1691679734.138113-CDS-H-elongata_contig78350:2467..25871691679734.138113-CDS-H-elongata_contig78350:2467..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78350 2468..2587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78350.15505.1

>prot_H-elongata_contig78350.15505.1 ID=prot_H-elongata_contig78350.15505.1|Name=mRNA_H-elongata_contig78350.15505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
QNTAAKSLLYECIHTMTLALPFTRKADGTESKAMPAAVRLCSEHLRKFTE
DPDQNLKYLGLVGFVNLMRSHPRAVAEHRSLVLACLSDDDVTIRTRALEL
LSGMVTKRNLEDLVLNLLQHVARAEGSYRDELIGKIIFVCSRDKYAYLSN
FRWYTGVLVDLSHVEGSKHGDALALQVMDVSLRVEEVREYAVHKAVGLLL
DQSLV
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mRNA from alignment at H-elongata_contig78350:333..2587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78350.15505.1 ID=mRNA_H-elongata_contig78350.15505.1|Name=mRNA_H-elongata_contig78350.15505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2255bp|location=Sequence derived from alignment at H-elongata_contig78350:333..2587+ (Himanthalia elongata Himel1 dioecious)
CAGAACACGGCGGCGAAATCTCTGCTGTACGAGTGCATCCACACGATGAC
GCTGGCGCTCCCCTTCACGCGAAAGGCGGACGGGACGGAGAGCAAAGCCA
TGCCCGCGGCGGTAAGGCTCTGCTCGGAGCACCTGCGGAAGTTCACGGAG
GACCCGGATCAGAACCTCAAGTACCTGGTGAGGAACAGAGTCGACTACGA
TCGCGTTTCTTGAGCATATATTTTGTTTTTCTGAAAAAGAAAACATAGGG
AACTCATTCCAACCCTCCAAACGTCCGCGCCTTCTTACCACCGTGATAGG
TGCAGTCCAGGAGACCAAATACCATCAGGTTCGAATGTGTACATTACTAC
CTTTGAACACAAAATCGTCACATGTGATTAATCGTGAACCCCAATAGTAA
ACTCATTATATGATGTTGTAACTGAAGTCTTGACCAGCTGCAGGTGTAGC
GGCGGTAGATCTGCGTCGCGTTTTTTACACTATATATATATATTTGGGGG
AGAGGGGGAAGAAAGGGGAGGGGGGGTGTTGCGTGTATGTCGGCGTGTTT
GGGTGGTTGTTTTTCTGTCTTTCGTTTGGTTTGGTATAATTTGTTTTTTT
TCACCGTGTTTTCGTACACCTTTTAGTCAATAAATGAGGAGAACTGTAAT
GCCCAGAAAAAACGAGCTGATATTGGTTCGCGGTTAAAAAAGAAAAATAC
CCACAACGAAACACGGAAACCTGGAGTTAAAACAAGAAACACCGCGTTCA
TTTTCGATGGATCGCGTGCCTGTCACGTGGCTTCGAAGGGGCTGGTAGGG
TTTGTGAACCTGATGCGATCGCATCCACGCGCTGTGGCGGAGCACCGCTC
GCTGGTCCTGGCGTGCTTATCGGACGACGACGTCACCATCAGGACTAGGG
CACTGGAACTCCTTTCGGGTGTGTTTTTTTGTCTCGTTGGGTTAGACACT
GAGAGATGGCGATGTATTGTAATTATTTCCTTGATTCAATGATTCATGGC
GCCACCTCAGTGTGTCGTCTAAAATGTGTTTACTCCCTGTTAACCGCAGC
GACCTCTTTGCCACAGCGATCTTTAATCAGTAAAAAATACGCCCTCTCTA
TCTCTTTCCTTCTTCCGGGATGTTATCCTCTCCATCCTTTCTAAACTAAT
TCCCCCTAACCTCGCCCAGGCATGGTAACCAAGCGTAACCTTGAGGATCT
GGTGCTGAACCTTCTACAGCACGTGGCGAGGGCAGAAGGCAGCTATCGCG
ACGAGCTAATCGGCAAAATAATCTTCGTGTGAGTCAACCCGTTGTGTGTT
AGGTAATAGTTTAGTTAATTGTTTACCTTTCGCTAGCCCCCCTTTCCACC
CAGATTAGTTGAACATACTGTAGATATTAGTTGCATTCGTATATGCCCAT
TTATGTAGAAGCATTCATACATGCATATACATACATACATGCATACGAGC
ATACATAAAACATATATATATATATACTGTACTGCATATAACTCTCACAC
CCACACATGTTCTCGTAAGCATCATCATGGCCATCAAAGTGCAAGTTGGG
AGTGCCGAACGTTATGTTTAAGGGATACCGTTGCTCGAAGTTCCTCGTGC
CGCGGCGGTGCATACCCATCCTCTACAATACCCCACCCCCCTCTCCCTCT
CCAGGTCACGGCCATCATCGTCATCGTTTCTTGGGCTTCGATATTTTCCA
TGCTAGCACGCCAACCATACGTCAATCACTTTGTCTCTCATTTTCGCTCT
TGTGTGATCTGGTTTGTTGCTGCGATTGGTATCTTTCCGTCCGTCCGTTC
AGGTGCTCCCGCGACAAGTATGCCTACCTGTCCAACTTCCGCTGGTATAC
GGGGGTGCTGGTGGATCTGAGCCACGTGGAAGTGAGCCTTCCCGAGAAGA
AGGGAGGGAAATTAAGTAGAGGAGGGGAGAAGAGCGGAATTAGTCGGGGT
TTACGTTGCGTTGTCCTTTTATGAAAGTACTCAGGAGAGCGCGGCTTTGA
AGAGCGCGTGATCGGTCTTGCTCATCATCTGGCGACATCGCGTAGGAGAT
AGCTTACATATATTCTTGTACGTGTGCTGTGCGTCTTGTTCTTGTGCTGA
TTGTTGATTGTCCCTAACGTTGTTTGTTGGCGCAGGGGTCCAAGCACGGT
GACGCTCTGGCGCTGCAGGTGATGGACGTCTCCCTACGAGTGGAGGAGGT
GCGGGAATACGCGGTGCACAAGGCGGTCGGTCTGCTGCTGGACCAATCCC
TCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig78350:333..2587+

>mRNA_H-elongata_contig78350.15505.1 ID=mRNA_H-elongata_contig78350.15505.1|Name=mRNA_H-elongata_contig78350.15505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig78350:333..2587+ (Himanthalia elongata Himel1 dioecious)
CAGAACACGGCGGCGAAATCTCTGCTGTACGAGTGCATCCACACGATGAC
GCTGGCGCTCCCCTTCACGCGAAAGGCGGACGGGACGGAGAGCAAAGCCA
TGCCCGCGGCGGTAAGGCTCTGCTCGGAGCACCTGCGGAAGTTCACGGAG
GACCCGGATCAGAACCTCAAGTACCTGCAGAACACGGCGGCGAAATCTCT
GCTGTACGAGTGCATCCACACGATGACGCTGGCGCTCCCCTTCACGCGAA
AGGCGGACGGGACGGAGAGCAAAGCCATGCCCGCGGCGGTAAGGCTCTGC
TCGGAGCACCTGCGGAAGTTCACGGAGGACCCGGATCAGAACCTCAAGTA
CCTGGGGCTGGTAGGGTTTGTGAACCTGATGCGATCGCATCCACGCGCTG
TGGCGGAGCACCGCTCGCTGGTCCTGGCGTGCTTATCGGACGACGACGTC
ACCATCAGGACTAGGGCACTGGAACTCCTTTCGGGGGCTGGTAGGGTTTG
TGAACCTGATGCGATCGCATCCACGCGCTGTGGCGGAGCACCGCTCGCTG
GTCCTGGCGTGCTTATCGGACGACGACGTCACCATCAGGACTAGGGCACT
GGAACTCCTTTCGGGCATGGTAACCAAGCGTAACCTTGAGGATCTGGTGC
TGAACCTTCTACAGCACGTGGCGAGGGCAGAAGGCAGCTATCGCGACGAG
CTAATCGGCAAAATAATCTTCGTGCATGGTAACCAAGCGTAACCTTGAGG
ATCTGGTGCTGAACCTTCTACAGCACGTGGCGAGGGCAGAAGGCAGCTAT
CGCGACGAGCTAATCGGCAAAATAATCTTCGTGTGCTCCCGCGACAAGTA
TGCCTACCTGTCCAACTTCCGCTGGTATACGGGGGTGCTGGTGGATCTGA
GCCACGTGGAAGTGCTCCCGCGACAAGTATGCCTACCTGTCCAACTTCCG
CTGGTATACGGGGGTGCTGGTGGATCTGAGCCACGTGGAAGGGTCCAAGC
ACGGTGACGCTCTGGCGCTGCAGGTGATGGACGTCTCCCTACGAGTGGAG
GAGGTGCGGGAATACGCGGTGCACAAGGCGGTCGGTCTGCTGCTGGACCA
ATCCCTCGTCGGGTCCAAGCACGGTGACGCTCTGGCGCTGCAGGTGATGG
ACGTCTCCCTACGAGTGGAGGAGGTGCGGGAATACGCGGTGCACAAGGCG
GTCGGTCTGCTGCTGGACCAATCCCTCGTC
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