mRNA_H-elongata_contig7835.15504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7835.15504.1
Unique NamemRNA_H-elongata_contig7835.15504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 7.120e-55
Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            +VS+  +   ARR +AD A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V  +    P+ P YVVVK +GY+  +WS ++ YR C+PI+PV+T+W       +GGT  R Q  L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS 
Sbjct:   76 RVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 230          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.320e-50
Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            +VS+  +   ARR +AD A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V  +    P+ P YVVVK +GY+  +WS ++ YR C+PI+PV+T+W       +GGT  R Q  L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS 
Sbjct: 1381 RVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 1535          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 4.660e-50
Identity = 83/145 (57.24%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   52 DNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            D A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V  +    P+ P YVVVK +GY+  +WS ++ YR C+PI+PV+T+W       +GGT  R Q  L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS 
Sbjct:  266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 404          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.940e-41
Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  106 VVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            ++++NL Q+ GLVNG +G+V ++V  +    P+ P YVVVK +GY+  +WS ++ YR C+PI+PV+T+W       +GGT  R Q  L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS 
Sbjct:    1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 121          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI0010697BE7 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010697BE7)

HSP 1 Score: 120 bits (301), Expect = 3.690e-30
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCL 480
            ++++  SS  AR+I AD    L+  L+L KGAK+++T NL    GL NG  G V+  +Y+     P+ P  VVVK D Y  P         + +PI P+  +   LD  HE     R Q  L+L WAIT++KSQG TLSKA I++GKKE+C G+T+V L
Sbjct:  149 QINARHSSATARKIPADEFSGLQPVLYLAKGAKIMLTMNLWPTVGLCNGATGTVEYFIYENNHHPPDLPIAVVVKFDNYRGPSLCQT--LSNYVPICPINVTTQSLDGFHE-----RQQLPLRLAWAITIHKSQGLTLSKAWINIGKKESCPGMTYVAL 300          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI00077A236B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A236B)

HSP 1 Score: 120 bits (301), Expect = 9.830e-30
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    7 VSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            +++  SS  A+ IS++   +LE T+FL KGAKV++T NL    GL NG  G + D++Y+     P+ P  V+V  + Y+ P  SD      C+PI PV  S   LD  HE     R Q  LKL +A+T++KSQG T+SKA ID+GK E   G+++V +S 
Sbjct:  154 INARHSSAIAKNISSEEMSNLEPTVFLAKGAKVMLTMNLWSSVGLCNGATGTILDLIYESNHQPPDLPIAVIVHFNDYSGPSISDT--LPSCVPICPVTVSIQSLDGHHE-----RQQLPLKLAYALTIHKSQGLTMSKAWIDIGKSEKTPGVSYVAISR 306          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A2Z6QFX4_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QFX4_9GLOM)

HSP 1 Score: 120 bits (301), Expect = 1.510e-28
Identity = 62/151 (41.06%), Postives = 94/151 (62.25%), Query Frame = 1
Query:   34 ARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            A++  +D A  LE  + L +GA+V++T NL  + GLVNG  G VQDI+++E +  P  P  V++  D Y  P  +     R  +PIAP++ +W+       G + +R+Q  ++L WAIT++KSQG TL KA+IDLG+KE   GL+FV +S 
Sbjct: 1360 AKKADSDTAHGLEAYILLARGARVMLTANLQTDIGLVNGSMGTVQDIIFNEDQGPPCLPIAVLISFDNYKGPTITSLKGER-VVPIAPIQRTWT----GKSGVSCSRLQIPIRLAWAITVHKSQGLTLQKAIIDLGEKEFTAGLSFVAVSR 1505          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT)

HSP 1 Score: 113 bits (282), Expect = 1.870e-28
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   49 ADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            +D    LE  +FL KGA+V++T NL    GL NG  G + DIV+   +  P+ P  V+V  + Y  P +S+E     C+PI P+  S        EGG   R Q  L+L WA+T++KSQG TLSKA ID+GK E   G+++V +S 
Sbjct:    3 SDEMSGLEPVVFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISR 141          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI000C71C813 (uncharacterized protein LOC111694302 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71C813)

HSP 1 Score: 119 bits (299), Expect = 2.370e-28
Identity = 66/153 (43.14%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   28 PAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            P  R I  D+   L+  L+L  G+++++  N+    GLVNG  G V+ IVYDE    P  PRY++VK + YT P   D     D  PI P+  SW     D +G T +R QF + L +A+T++KSQG TL+ AVID+G KE C+GLT+V LS 
Sbjct:  493 PNVRSIDGDSC-GLDAQLYLAIGSRIILRHNVWVAGGLVNGSVGTVKAIVYDENVEPPNLPRYILVKFESYTGPCVID-----DLFPIVPIVRSW-----DCKGVTFSRKQFPISLGYAVTIHKSQGLTLASAVIDIGTKEFCSGLTYVALSR 634          
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A015JB11_RHIIW (Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JB11_RHIIW)

HSP 1 Score: 114 bits (285), Expect = 2.990e-28
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query:   34 ARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
            A +   + A+ LE  L L +GA+V++  NL  E GLVNG  G VQ+I+++E ++ P  P  V+++ D Y  P    E+  R  +P++P+  SW     + +  T +R+Q  + L WAIT++KSQG TL KAVID+GKKE   G +FV +S 
Sbjct:   70 ASKADPELAKGLEAQLLLARGARVMLRINLWTEVGLVNGSLGTVQEIIFEENQSPPSLPIAVLIEFDNYYGPAIVTEEGKR-LVPVSPIRYSW-----EGKKVTCSRLQVPICLAWAITIHKSQGLTLQKAVIDIGKKEYAAGQSFVAISR 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE7.120e-5555.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE1.320e-5055.28ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JFG8_9PHAE4.660e-5057.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE2.940e-4155.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0010697BE73.690e-3042.14ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendr... [more]
UPI00077A236B9.830e-3041.25ATP-dependent DNA helicase PIF1-like n=1 Tax=Acrop... [more]
A0A2Z6QFX4_9GLOM1.510e-2841.06ATP-dependent DNA helicase n=2 Tax=Rhizophagus cla... [more]
A0A6S7KC61_PARCT1.870e-2841.10ATP-dependent DNA helicase PIF1 n=1 Tax=Paramurice... [more]
UPI000C71C8132.370e-2843.14uncharacterized protein LOC111694302 n=1 Tax=Trich... [more]
A0A015JB11_RHIIW2.990e-2840.40Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7835contigH-elongata_contig7835:9011..9496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size141
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.3348336-UTR-H-elongata_contig7835:9010..93551622931188.3348336-UTR-H-elongata_contig7835:9010..9355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7835 9011..9355 +
1691679734.0542655-UTR-H-elongata_contig7835:9010..93551691679734.0542655-UTR-H-elongata_contig7835:9010..9355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7835 9011..9355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.3541636-CDS-H-elongata_contig7835:9355..94961622931188.3541636-CDS-H-elongata_contig7835:9355..9496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7835 9356..9496 +
1691679734.0646415-CDS-H-elongata_contig7835:9355..94961691679734.0646415-CDS-H-elongata_contig7835:9355..9496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7835 9356..9496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7835.15504.1prot_H-elongata_contig7835.15504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7835 9356..9496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7835.15504.1

>prot_H-elongata_contig7835.15504.1 ID=prot_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH
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mRNA from alignment at H-elongata_contig7835:9011..9496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7835.15504.1 ID=mRNA_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig7835:9011..9496+ (Himanthalia elongata Himel1 dioecious)
CTGAAGGTGAGCTCAGGCGACAGTTCTCCAGCTGCCAGGCGTATATCGGC CGATAACGCTCAAGACTTAGAGCGCACACTGTTCTTGATAAAGGGGGCTA AGGTTGTGGTTACACGTAACTTGTGACAGGAAGCAGGGCTTGTCAACGGA AGACAGGGAGATGTTCAAGATATAGTATACGATGAGGGCAAGACAGCACC TGAGCAGCCGCGTTACGTGGTAGTAAAACTGGACGGCTATACAAGACCAC AGTGGTCGGACGAGGATTGGTATCGAGATTGTATTCCAATCGCTCCCGTT GAGACCTCCTGGTCTGTATTAGATCAAGACCATGAAGGTGGTACCATGAC CAGAATTCAGTTCCTACTCAAGTTATGCTGGGCTATCACCATGTACAAGA GTCAAGGTCAGACGTTGTCAAAGGCCGTGATCGATTTGGGAAAAAAGGAA GCGTGCACTGGATTGACTTTCGTCTGTTTGAGTCAT
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Coding sequence (CDS) from alignment at H-elongata_contig7835:9011..9496+

>mRNA_H-elongata_contig7835.15504.1 ID=mRNA_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig7835:9011..9496+ (Himanthalia elongata Himel1 dioecious)
ATGACCAGAATTCAGTTCCTACTCAAGTTATGCTGGGCTATCACCATGTA
CAAGAGTCAAGGTCAGACGTTGTCAAAGGCCGTGATCGATTTGGGAAAAA
AGGAAGCGTGCACTGGATTGACTTTCGTCTGTTTGAGTCATATGACCAGA
ATTCAGTTCCTACTCAAGTTATGCTGGGCTATCACCATGTACAAGAGTCA
AGGTCAGACGTTGTCAAAGGCCGTGATCGATTTGGGAAAAAAGGAAGCGT
GCACTGGATTGACTTTCGTCTGTTTGAGTCAT
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